Lsi03G006510.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAACGGCCACATACATTCTCTCCCTCTCTCTCTCCTCCAGCCAATCCTCTCCATTTGTTTTGTGGTTTAACTCTCAAACCCACTTCACTCTGATCCAAAGGACTCCCAATTCTGAGCTATGGCCGCCGCAAGAGTCTTAGCCAATGCCACCACCACCACCACCGCCGCCACCGCAGTCACCGCCTCCTCTTTTCTCTTCAAGACCTCCTTTCTTCCCAACCACACCCTCCCATTCAATTCCAATTTCATTTCCCTCTCCAGAAGACTCCCCTCCTCCAGAAAATCATTCTCCTGCAGAGCTTTGTACCTCCCTGAGATCAAGATCAAGGAGGAAGGCCAGCCTGAAACCCTCGACTATCGCGTCTTCTTCACTGACCAGTCCGGCAAAAAGGTGTCTCCCCCCCCCCTTAATGAATTTGAAGAATTATTTTGTCTATAAGGTGAATGGGTTTGATTGCAATTAGCGAATTGGAGAGCCCTTTGATGGATCTTTTGAATTTCATGAACTGCGTTTGAATGCGAGGGTGCAGATCATGGATTATGGACACTCTGTTATTCTGTGTGTATTGGTATATAATCCCATATATGCAAACGGACACCTTTTATTCTGATTCTCTAACAATTTCTTTGAAGGGCTGTGAATAAAAGACTAGTGGTTAGTGTCAGATATTAATCATGATAGTGTTCTGTGTGTGTTGTATTATGTTTGCGAACTTTGTTTTTCAGATGTGATGTTTTTGTTTTCCAATGCTTATAAAATTGAATATTTGTATTAATTCTAGACAGTTCATTTGAACAAATTTTTAGATGTCATCTAAGAGACTATATAACTAACAAGAATGTTGTACTCTTTTTCATTTTATTTCGTCATGTTTATAAGGAAGTGCTGTTTATGGTGTAGGTCTCCCCTTGGCATGATATACCGCTGCATTTGGGGGATGGTGTTTTCAACTTCATTGTTGAAATTCCTAAAGAAACAAGTGCGAAGATGGAGGTTGCGACCGATGAGCCGTTCACTCCTATAAAGCAAGATACCAAAAAGGGGAAGCTTCGATACTACCCGTAAGAAATGATGTTTTTGTTGCTTAGCTCTACTACATATTATTGTTGGACCTAAATGGAGTACTAAAGTATGTTAGACTTAGACATGATATAGTAAGTTTAGCTGTTCGCCAAGTGCCTAATCATGTGAATGGATGGATGTAGAAAGCACAACTGAGTGGCCGTGTCCTGTTTTCCTCATTGACAATGACAATGTTAGTGTTTGGACATCGTAGTCTAGCATCATTTTTCATTGTGTTCTCTGATATTTATTTTGAGAGAACATCGTGTAAAAAAAATTTATGCTTGTTGTAGAAATATCCATTTCAGCCTCCACTAATAGATTTCAAATGAATTTGATTGTTGGAGAATTGGACTATCTTAAATAGTTGTAACCATAAGTAATATCTATCCACCTCTAGTTGTTTGTTGAATATTTGTGTGCACATATATATATATTACATTGTGTGGGTGAGAGAATTTGAATCTACAGCTGCTTTGAAGAAGTAGGGTAGTCATAATTGCCAACCTATGCTCATCTTGGCTAATATGCATAGTTCTGTTTTGTTTTTTTTCCTTCTTCTAAATAATGAGTTTGAGGCTCTAGCATATGACAATTAGATTCTCTAATAACGTCTCTTTTAATATTTAACCACTTGACTGCTATGTCTCACAGTTACAATATCAACTGGAATTACGGATTACTTCCACAAACATGGGAAGACCCATCCTTCGCTAACTCTGAAGTTGATGGTGCATTTGGAGACAATGATCCTGGTATGCACCACTGGATATTTTCCTTGAACTTTTTTGTTAGGTTTTGTAACTTCCTTAACCCAAATGAATAGAATAAATGAATAGAATGTCACAAATTATAAACCCAATGATTTTGTTCCTTTTTCTATAACTATTTGTTTTTATTTTGTAGTTGATGTCGTTGAAATTGGTGAAAGTGATCGGAAGATAGGTGAGATTCTAAAAGTGAAACCACTGGCTGCTTTAGCTATGATTGATGAAGGGGAACTTGACTGGAAAATAGTTGCAATTTCACTTGATGATCCTAAAGCTTCATTAGTGAATGATATAGATGATGTCGAGAAACATTTCCCGGTATTCATCTTTACCTTATAAAGCAGGTCTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGAGAGCATCTAGCTATCCTTTGTACTCTATACCAGAATATGTTATGTACTAATGGAGTGAAAGATTTTTCCTACCTAATCAAAGAGTTACCTGCAGGGAACTTTAACTGCTATAAGAGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAGCCTGCTAACAAATTTGGTCTGGGAAACAAGCCTGCAAACAAGGTAAATACCCAAACTCCACCTCTAAATTTCAATCCTCTAGTCCTTTGCAATTTTTTGTTTATAGCTCAAAGGGGTCATATTTTTCAATTCACCAATACAGCATAAGAACTTGCCTATGTAACATGTGATAATGTAAATACAAAATAGTTGCTTTGGTATAACATAACTCATATATATATATGTATCCATATGATATCTATATATATACAACAACTGGGGTGTTGGGAATCCCACATGACCATCCCCATTAAGCCTTGTTTCGTTTGCCTCAAGGCGGCTAGCTTCAGGAGACAACAGAAAGAAAAAAAAGCACGATACTTTTCATACTTCATTCTCTTTTTACTATCAGCAGTAAATTTTTATTGTCTTCACTTTATTAAGCAAAGCAGTCTTTGGATCTAGCTTTTTTCTGCCCAAATTTGATCTCCCCTAGCAGTCCCCAACCCCAAGAGAATAAAACATAAAATATCCATGATATTGTAACTACTTTTGTTCGATTTAAATTTTCTTTGAGCTAAAGTTATAACATGGTATTCTTGGTGCAGGATTATGCCCTTAAAGTTATTGAAGAGACCAACAAATCTTGGGCCAATCTCGTTAAGAGATCAATTCCTTCTGGTGAGCTCTCTCTTGTATAGAATTCATAGATTGTAGGAAGATGCGGGTGCCAGGTTCTAATTATGTAAGTGCTCAAATTGAAACCGAATTTGTGAATTCTGGCTTTCTGATTTATATGTTTATAGTGATGTGGAACCCATTTTTCCATTTTTGAGACAGAATAATGTATGCCCAGTTGGTGGTTTTGATTTTGTATTGGACAACTCGGTTTTTAAGTAGGTTCTTTTTTCTGAAGTTGTTTGTTAGAGAAACTGATGAGTTTGAGAAAAAGTGGATTTTGGTCACCTCAAGCCTTTATAATAAAGGTGAATGGGCTACTTATGGTTCTTTACTCCTTTTCAATGTTCTGGAATGGTTTATGTGTACTCAAGATCAAACAAACATTTTG CAAACGGCCACATACATTCTCTCCCTCTCTCTCTCCTCCAGCCAATCCTCTCCATTTGTTTTGTGGTTTAACTCTCAAACCCACTTCACTCTGATCCAAAGGACTCCCAATTCTGAGCTATGGCCGCCGCAAGAGTCTTAGCCAATGCCACCACCACCACCACCGCCGCCACCGCAGTCACCGCCTCCTCTTTTCTCTTCAAGACCTCCTTTCTTCCCAACCACACCCTCCCATTCAATTCCAATTTCATTTCCCTCTCCAGAAGACTCCCCTCCTCCAGAAAATCATTCTCCTGCAGAGCTTTGTACCTCCCTGAGATCAAGATCAAGGAGGAAGGCCAGCCTGAAACCCTCGACTATCGCGTCTTCTTCACTGACCAGTCCGGCAAAAAGGTCTCCCCTTGGCATGATATACCGCTGCATTTGGGGGATGGTGTTTTCAACTTCATTGTTGAAATTCCTAAAGAAACAAGTGCGAAGATGGAGGTTGCGACCGATGAGCCGTTCACTCCTATAAAGCAAGATACCAAAAAGGGGAAGCTTCGATACTACCCTTACAATATCAACTGGAATTACGGATTACTTCCACAAACATGGGAAGACCCATCCTTCGCTAACTCTGAAGTTGATGGTGCATTTGGAGACAATGATCCTGTTGATGTCGTTGAAATTGGTGAAAGTGATCGGAAGATAGGTGAGATTCTAAAAGTGAAACCACTGGCTGCTTTAGCTATGATTGATGAAGGGGAACTTGACTGGAAAATAGTTGCAATTTCACTTGATGATCCTAAAGCTTCATTAGTGAATGATATAGATGATGTCGAGAAACATTTCCCGGGAACTTTAACTGCTATAAGAGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAGCCTGCTAACAAATTTGGTCTGGGAAACAAGCCTGCAAACAAGGATTATGCCCTTAAAGTTATTGAAGAGACCAACAAATCTTGGGCCAATCTCGTTAAGAGATCAATTCCTTCTGGTGAGCTCTCTCTTGTATAGAATTCATAGATTGTAGGAAGATGCGGGTGCCAGGTTCTAATTATGTAAGTGCTCAAATTGAAACCGAATTTGTGAATTCTGGCTTTCTGATTTATATGTTTATAGTGATGTGGAACCCATTTTTCCATTTTTGAGACAGAATAATGTATGCCCAGTTGGTGGTTTTGATTTTGTATTGGACAACTCGGTTTTTAAGTAGGTTCTTTTTTCTGAAGTTGTTTGTTAGAGAAACTGATGAGTTTGAGAAAAAGTGGATTTTGGTCACCTCAAGCCTTTATAATAAAGGTGAATGGGCTACTTATGGTTCTTTACTCCTTTTCAATGTTCTGGAATGGTTTATGTGTACTCAAGATCAAACAAACATTTTG ATGGCCGCCGCAAGAGTCTTAGCCAATGCCACCACCACCACCACCGCCGCCACCGCAGTCACCGCCTCCTCTTTTCTCTTCAAGACCTCCTTTCTTCCCAACCACACCCTCCCATTCAATTCCAATTTCATTTCCCTCTCCAGAAGACTCCCCTCCTCCAGAAAATCATTCTCCTGCAGAGCTTTGTACCTCCCTGAGATCAAGATCAAGGAGGAAGGCCAGCCTGAAACCCTCGACTATCGCGTCTTCTTCACTGACCAGTCCGGCAAAAAGGTCTCCCCTTGGCATGATATACCGCTGCATTTGGGGGATGGTGTTTTCAACTTCATTGTTGAAATTCCTAAAGAAACAAGTGCGAAGATGGAGGTTGCGACCGATGAGCCGTTCACTCCTATAAAGCAAGATACCAAAAAGGGGAAGCTTCGATACTACCCTTACAATATCAACTGGAATTACGGATTACTTCCACAAACATGGGAAGACCCATCCTTCGCTAACTCTGAAGTTGATGGTGCATTTGGAGACAATGATCCTGTTGATGTCGTTGAAATTGGTGAAAGTGATCGGAAGATAGGTGAGATTCTAAAAGTGAAACCACTGGCTGCTTTAGCTATGATTGATGAAGGGGAACTTGACTGGAAAATAGTTGCAATTTCACTTGATGATCCTAAAGCTTCATTAGTGAATGATATAGATGATGTCGAGAAACATTTCCCGGGAACTTTAACTGCTATAAGAGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAGCCTGCTAACAAATTTGGTCTGGGAAACAAGCCTGCAAACAAGGATTATGCCCTTAAAGTTATTGAAGAGACCAACAAATCTTGGGCCAATCTCGTTAAGAGATCAATTCCTTCTGGTGAGCTCTCTCTTGTATAG MAAARVLANATTTTTAATAVTASSFLFKTSFLPNHTLPFNSNFISLSRRLPSSRKSFSCRALYLPEIKIKEEGQPETLDYRVFFTDQSGKKVSPWHDIPLHLGDGVFNFIVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRYYPYNINWNYGLLPQTWEDPSFANSEVDGAFGDNDPVDVVEIGESDRKIGEILKVKPLAALAMIDEGELDWKIVAISLDDPKASLVNDIDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLGNKPANKDYALKVIEETNKSWANLVKRSIPSGELSLV
BLAST of Lsi03G006510.1 vs. Swiss-Prot
Match: IPYR6_ARATH (Soluble inorganic pyrophosphatase 6, chloroplastic OS=Arabidopsis thaliana GN=PPA6 PE=1 SV=1) HSP 1 Score: 458.0 bits (1177), Expect = 8.1e-128 Identity = 230/304 (75.66%), Postives = 256/304 (84.21%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. Swiss-Prot
Match: IPYR1_CHLRE (Soluble inorganic pyrophosphatase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ppa1 PE=1 SV=1) HSP 1 Score: 318.5 bits (815), Expect = 7.6e-86 Identity = 153/257 (59.53%), Postives = 196/257 (76.26%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. Swiss-Prot
Match: IPYR_MOUSE (Inorganic pyrophosphatase OS=Mus musculus GN=Ppa1 PE=1 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 2.2e-64 Identity = 116/228 (50.88%), Postives = 156/228 (68.42%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. Swiss-Prot
Match: IPYR_CANGA (Inorganic pyrophosphatase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=IPP1 PE=3 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 3.7e-64 Identity = 122/240 (50.83%), Postives = 168/240 (70.00%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. Swiss-Prot
Match: IPYR_BOVIN (Inorganic pyrophosphatase OS=Bos taurus GN=PPA1 PE=1 SV=2) HSP 1 Score: 244.6 bits (623), Expect = 1.4e-63 Identity = 116/228 (50.88%), Postives = 158/228 (69.30%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TrEMBL
Match: E5GCQ8_CUCME (Inorganic pyrophosphatase OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 584.7 bits (1506), Expect = 6.4e-164 Identity = 290/302 (96.03%), Postives = 292/302 (96.69%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TrEMBL
Match: A0A0A0K2R2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067480 PE=4 SV=1) HSP 1 Score: 578.9 bits (1491), Expect = 3.5e-162 Identity = 287/302 (95.03%), Postives = 291/302 (96.36%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TrEMBL
Match: A0A0D2SUI7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G042800 PE=4 SV=1) HSP 1 Score: 477.2 bits (1227), Expect = 1.4e-131 Identity = 238/302 (78.81%), Postives = 259/302 (85.76%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TrEMBL
Match: A0A0D2UZL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G1615001 PE=4 SV=1) HSP 1 Score: 477.2 bits (1227), Expect = 1.4e-131 Identity = 240/301 (79.73%), Postives = 262/301 (87.04%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TrEMBL
Match: I3SKT1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 476.1 bits (1224), Expect = 3.2e-131 Identity = 240/302 (79.47%), Postives = 261/302 (86.42%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TAIR10
Match: AT5G09650.1 (AT5G09650.1 pyrophosphorylase 6) HSP 1 Score: 458.0 bits (1177), Expect = 4.5e-129 Identity = 230/304 (75.66%), Postives = 256/304 (84.21%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TAIR10
Match: AT4G01480.1 (AT4G01480.1 pyrophosphorylase 5) HSP 1 Score: 82.8 bits (203), Expect = 4.0e-16 Identity = 56/168 (33.33%), Postives = 87/168 (51.79%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TAIR10
Match: AT1G01050.1 (AT1G01050.1 pyrophosphorylase 1) HSP 1 Score: 82.8 bits (203), Expect = 4.0e-16 Identity = 58/168 (34.52%), Postives = 85/168 (50.60%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TAIR10
Match: AT3G53620.1 (AT3G53620.1 pyrophosphorylase 4) HSP 1 Score: 80.5 bits (197), Expect = 2.0e-15 Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. TAIR10
Match: AT2G18230.1 (AT2G18230.1 pyrophosphorylase 2) HSP 1 Score: 79.3 bits (194), Expect = 4.4e-15 Identity = 65/205 (31.71%), Postives = 96/205 (46.83%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. NCBI nr
Match: gi|659110206|ref|XP_008455105.1| (PREDICTED: soluble inorganic pyrophosphatase 1, chloroplastic [Cucumis melo]) HSP 1 Score: 584.7 bits (1506), Expect = 9.1e-164 Identity = 290/302 (96.03%), Postives = 292/302 (96.69%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. NCBI nr
Match: gi|449438258|ref|XP_004136906.1| (PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Cucumis sativus]) HSP 1 Score: 578.9 bits (1491), Expect = 5.0e-162 Identity = 287/302 (95.03%), Postives = 291/302 (96.36%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. NCBI nr
Match: gi|1009149443|ref|XP_015892482.1| (PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 479.2 bits (1232), Expect = 5.4e-132 Identity = 236/302 (78.15%), Postives = 260/302 (86.09%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. NCBI nr
Match: gi|823253638|ref|XP_012459452.1| (PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic-like isoform X1 [Gossypium raimondii]) HSP 1 Score: 477.2 bits (1227), Expect = 2.1e-131 Identity = 240/301 (79.73%), Postives = 262/301 (87.04%), Query Frame = 1
BLAST of Lsi03G006510.1 vs. NCBI nr
Match: gi|823204450|ref|XP_012436481.1| (PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic-like [Gossypium raimondii]) HSP 1 Score: 477.2 bits (1227), Expect = 2.1e-131 Identity = 238/302 (78.81%), Postives = 259/302 (85.76%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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