Lsi03G005150.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G005150.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 5957663 .. 5958352 (-)
Sequence length285
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTAGTTTTTTCTTTCTTTTAATTCACGAGAAGTTTTAATTGTTAGGGTGTGAAAGAAGGGAAATGAATGGTTCTTAATGTGTAAACAATAGACAATAGGGATAGTTTGGATGTGAAAAATATAACATGTACATGTAAAAATAGAAAGAAAAGAAAAAAGAGTATTTGGCAAATTGTTAACCCTCCATTTCAAACAATTTCCCCCTAATCGGTTCAAACTAAACTCACCTATTAGAAGGCAACAAAAAAGAATTACCTCGATATAAATAGTCACATTTCAAGTCTTTTGTCACAACAAAGCCATTGTAACTTAAAGCCCTTTATTTTGTATATCCAATTGCCCACTACAAAAAATGGTTGTTTCTAAAGAGAACATAGTTATTTTTATTGGTCTTCTTTTGTTTAGCATGAACTTTGTTGAAATTGCAAGTGCAATTAGATCTATCAATCAAAGTCCTCTCGAAGATGAAGTCAATGTTGTAGATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGTAAGTAGAAGGAACAATCCAATTGATTATTGCAAATCTCTACAAGATTGCCAATATATGATTCATGGAGATGAAGTAAGAAATATGGTTGTTGACACCTCAAAAAAGGTTAAAGGGGATAAAGATATCGTTCGTTCTCTACCATATATTGTTTAA

mRNA sequence

ATGCACATGAACTTTGTTGAAATTGCAAGTGCAATTAGATCTATCAATCAAAGTCCTCTCGAAGATGAAGTCAATGTTGTAGATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGTAAGTAGAAGGAACAATCCAATTGATTATTGCAAATCTCTACAAGATTGCCAATATATGATTCATGGAGATGAAGTAAGAAATATGGTTGTTGACACCTCAAAAAAGGTTAAAGGGGATAAAGATATCGTTCGTTCTCTACCATATATTGTTTAA

Coding sequence (CDS)

ATGCACATGAACTTTGTTGAAATTGCAAGTGCAATTAGATCTATCAATCAAAGTCCTCTCGAAGATGAAGTCAATGTTGTAGATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGTAAGTAGAAGGAACAATCCAATTGATTATTGCAAATCTCTACAAGATTGCCAATATATGATTCATGGAGATGAAGTAAGAAATATGGTTGTTGACACCTCAAAAAAGGTTAAAGGGGATAAAGATATCGTTCGTTCTCTACCATATATTGTTTAA

Protein sequence

MHMNFVEIASAIRSINQSPLEDEVNVVDSPRVPIELHDDANQYVSRRNNPIDYCKSLQDCQYMIHGDEVRNMVVDTSKKVKGDKDIVRSLPYIV
Homology
[Close]
BLAST of Lsi03G005150.1 vs. TrEMBL
Match: A0A0A0K605_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G269050 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-07
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1 

Query: 3   MNFVEIASAIRSINQSPLEDEVNVVDSP---RVPIELHDDANQYVSRRNNPIDYCKSLQD 62
           +NFVEIASA R I +    D   VV  P    +  EL DDA +Y S  N  +  CKSL+ 
Sbjct: 19  INFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQKYASWYNT-VYPCKSLRK 78

Query: 63  CQYMIHGDEVRNMV-VDTSKKVKGDKDIVRSLPYIV 95
            ++ I+GD+V N   V+TS+ VKGDKD     P+IV
Sbjct: 79  AKHSINGDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]
BLAST of Lsi03G005150.1 vs. NCBI nr
Match: gi|700189126|gb|KGN44359.1| (hypothetical protein Csa_7G269050 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-07
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1 

Query: 3   MNFVEIASAIRSINQSPLEDEVNVVDSP---RVPIELHDDANQYVSRRNNPIDYCKSLQD 62
           +NFVEIASA R I +    D   VV  P    +  EL DDA +Y S  N  +  CKSL+ 
Sbjct: 19  INFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQKYASWYNT-VYPCKSLRK 78

Query: 63  CQYMIHGDEVRNMV-VDTSKKVKGDKDIVRSLPYIV 95
            ++ I+GD+V N   V+TS+ VKGDKD     P+IV
Sbjct: 79  AKHSINGDKVGNTFDVNTSQNVKGDKD-----PHIV 108

The following BLAST results are available for this feature:
BLAST of Lsi03G005150.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G005150.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K605_CUCSA3.4e-0744.79Uncharacterized protein OS=Cucumis sativus GN=Csa_7G269050 PE=4 SV=1[more]
BLAST of Lsi03G005150.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G005150.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189126|gb|KGN44359.1|4.9e-0744.79hypothetical protein Csa_7G269050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi03G005150Lsi03G005150gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi03G005150.1.CDS.2Lsi03G005150.1.CDS.2CDS
Lsi03G005150.1.CDS.1Lsi03G005150.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi03G005150.1Lsi03G005150.1-proteinpolypeptide