Lsi02G006270.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G006270.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nuclear transport factor, putative
Location	chr02 : 5581012 .. 5582805 (-)
Sequence length	930

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCATCTCCTTTATTCCTCTCTCTTTGCGTACATATACAGCGATTTCAATTATTCCCTATTTTCAATCACTCCCCCAAATGACTCTTCTACCCATCTTCCCCTTCATTTGTCAAGCAGATATCTCAAGGGCATGCCAGTAATTTCGTCCCCTCCTACATGCACTTGAAAATAAAAGGGTTTGAAGAAACTTAGTAAGTGTACATTATAGTTTGTTGTTGTAGAGAAAAAGAAATGGAAGAAGAGGCTGAGATAATTGGGAAGGCTTTTGTGGAACATTATTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCCTCTTTGTACCAACCCGACTCCATGCTCACTTTTGAGGGCCAACAAATTTTAGGTGTTGATGATATCTCCTCAAAGCTTCAACAATTGCCATTTGAACGTTGTCGACATATCGTTAGCACCGTCGACACGCAGCCTTCCTCCGCCCTCGGCTCCATCCTCATCTTCGTCAGCGGTAGCCTTGAGCTGCCCGAAGAAGAACACCAACTCAGATACAGCCAGGTTTATGGTTACCCCATCCATTTATACTTTTGAATGTTTAAGATGATTACAGTAAATTTAATTAGTTAATTATAACAAACTTTAGACCTCATTTAGTTTTTTGTTGGCGAAAATTAAGCCTACAAACACTTATTTCACTTTTAAATTTCTTGTTCTACTTTTTATTAATATATACGTTTTCAAAAACTAAATTCAAAATTTAAAAATTAAAAAAAATAAAAATAGTTTTTGTTATTGAATTTTAGTTAAGAATTCAACTCTTATACTCAAAGAAAGATGTAAAAAAATAGAAAATAGATTTAATTTTCAGAAAAAAAAAATAGTTATAAAGACACTTAATTTTAAAAGTTTGTTTAAATTTAATTGGACAAGTCCTTGCTCTAATATTATTTTAAATTGATAAATTAAGGTGAATTTAATCTTGGTTAAAATACTGTTTGTTTGGTCTCATTCTATTTTCAAATATTTAAATTAGTGTGTTCTATTAGTCTATTATTAACTTTTCTTAAACATTTTACAACATCAAGTCTCAAATAAAAATACTTTTATATTGTGTTTATTCTTTGCAAATAATTGTTATTATTTAACTATTTAAACTAACTAGTTTTAAGATAGAGAAAGATTAGGTGTAGCGTAGGTTGCACCTATCTCCATACTTCCTATTTTCTTTTAAATATATATATTTTAAAAAAATTACACCATGTGACATAATCTCAATGGGTGATGGCTAGGCTGGGTTGTACCCGATTTTTTTCCTTTTAAAATTTATTGAAATTATTTAAATTAAATTTAGAAATTTAGAATAATGAAACTTTTAATATTTGATTAACATTTTTAACAAAATTAAATAATATTTGGTTGCAGATGTTTCACTTAGTACCTTCGCCACTGGGCAACCTTTTCGTTCAGAACGATATTTTTCGCCTCAATTACGGTTAGTTCGTTCAGGGCTTCTTCGTGTCTACATTTCAACACACAAACGCTGTCGTTTCAAGGGATGTGATTTGTATTCTGCTTCTTATCTAAATATACGAAATTTCTGATTTGTTTTTTCTTTATAATCTCTTATGTGCTCTGTTTCGTCTCCCTTTTCATTTTTGGGCTTGGTATTTCGGCCCAATAATCTAGCTATGACTTGCCCGGCCCAATATCTCGACTTAAACAGGCCCCTGGTCGTAACTGTGCTAGCTTTTTGAGACGTGATGATCAAAGTTTATTTTCGATCAAATTTAATAATATTTTTGTGACTGCTGAGTGAA

mRNA sequence

ACCATCTCCTTTATTCCTCTCTCTTTGCGTACATATACAGCGATTTCAATTATTCCCTATTTTCAATCACTCCCCCAAATGACTCTTCTACCCATCTTCCCCTTCATTTGTCAAGCAGATATCTCAAGGGCATGCCAGTAATTTCGTCCCCTCCTACATGCACTTGAAAATAAAAGGGTTTGAAGAAACTTAGTAAGTGTACATTATAGTTTGTTGTTGTAGAGAAAAAGAAATGGAAGAAGAGGCTGAGATAATTGGGAAGGCTTTTGTGGAACATTATTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCCTCTTTGTACCAACCCGACTCCATGCTCACTTTTGAGGGCCAACAAATTTTAGGTGTTGATGATATCTCCTCAAAGCTTCAACAATTGCCATTTGAACGTTGTCGACATATCGTTAGCACCGTCGACACGCAGCCTTCCTCCGCCCTCGGCTCCATCCTCATCTTCGTCAGCGGTAGCCTTGAGCTGCCCGAAGAAGAACACCAACTCAGATACAGCCAGATGTTTCACTTAGTACCTTCGCCACTGGGCAACCTTTTCGTTCAGAACGATATTTTTCGCCTCAATTACGGTTAGTTCGTTCAGGGCTTCTTCGTGTCTACATTTCAACACACAAACGCTGTCGTTTCAAGGGATGTGATTTGTATTCTGCTTCTTATCTAAATATACGAAATTTCTGATTTGTTTTTTCTTTATAATCTCTTATGTGCTCTGTTTCGTCTCCCTTTTCATTTTTGGGCTTGGTATTTCGGCCCAATAATCTAGCTATGACTTGCCCGGCCCAATATCTCGACTTAAACAGGCCCCTGGTCGTAACTGTGCTAGCTTTTTGAGACGTGATGATCAAAGTTTATTTTCGATCAAATTTAATAATATTTTTGTGACTGCTGAGTGAA

Coding sequence (CDS)

ATGGAAGAAGAGGCTGAGATAATTGGGAAGGCTTTTGTGGAACATTATTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCCTCTTTGTACCAACCCGACTCCATGCTCACTTTTGAGGGCCAACAAATTTTAGGTGTTGATGATATCTCCTCAAAGCTTCAACAATTGCCATTTGAACGTTGTCGACATATCGTTAGCACCGTCGACACGCAGCCTTCCTCCGCCCTCGGCTCCATCCTCATCTTCGTCAGCGGTAGCCTTGAGCTGCCCGAAGAAGAACACCAACTCAGATACAGCCAGATGTTTCACTTAGTACCTTCGCCACTGGGCAACCTTTTCGTTCAGAACGATATTTTTCGCCTCAATTACGGTTAG

Protein sequence

MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIFRLNYG

Homology

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BLAST of Lsi02G006270.1 vs. Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-36
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1


Query: 4   EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCR 63
           + + + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+
Sbjct: 5   DPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCK 64

Query: 64  HIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIFRLN 123
           H +STVD QPS     +L+FVSG+L+L  EEH L++SQMFHL+P+P G+ +V NDIFRLN
Sbjct: 65  HHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLN 124

Query: 124 Y 125
           Y
Sbjct: 125 Y 125

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BLAST of Lsi02G006270.1 vs. Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.6e-35
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 1


Query: 4   EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCR 63
           +A+ + KAFVEHYY+ FD  R +L SLYQ  SMLTFEGQQ LG   I+ KL  LPF +C 
Sbjct: 2   DADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCH 61

Query: 64  HIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIFRLN 123
           H ++TVD QPS   G +L+FVSGSL    +EH L++SQMF L+P+  GN +VQND+FRLN
Sbjct: 62  HDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAG-GNFYVQNDMFRLN 121

Query: 124 YG 126
           YG
Sbjct: 122 YG 122

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BLAST of Lsi02G006270.1 vs. Swiss-Prot
Match: NTF2_SCHPO (Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ntf2 PE=3 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 5.1e-28
Identity = 60/114 (52.63%), Postives = 82/114 (71.93%), Query Frame = 1


Query: 12  FVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHIVSTVDT 71
           F + YYQ FD++R+ LSSLY+ +SML+FEG Q+ G   I  KL  LPF+R +H +ST+D 
Sbjct: 11  FTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDA 70

Query: 72  QPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIFRLNYG 126
           QP+   GS+++ V+G L L EE+   RYSQ+FHLV +  GN +V ND+FRLNYG
Sbjct: 71  QPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNN-GNYYVLNDLFRLNYG 123

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BLAST of Lsi02G006270.1 vs. Swiss-Prot
Match: NTF2_CANAX (Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           M  +   +   F   YY  FD++R+ L +LY+ +SMLTFE  Q+ G  DI  KL  LPF+
Sbjct: 1   MSVDFNAVATEFCNFYYNQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQ 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           +  H +ST+D QP+SA G IL+ V+G L + EE++  RYSQ+FHL+P   G+ +V NDIF
Sbjct: 61  KVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPDN-GSYYVFNDIF 120

Query: 121 RLNY 125
           RLNY
Sbjct: 121 RLNY 123

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BLAST of Lsi02G006270.1 vs. Swiss-Prot
Match: NTF2_DEBHA (Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NTF2 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-25
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           M  +   +   F   YYQ FD++R  L +LY+  SMLTFE  Q+ G  DI  KL  LPF+
Sbjct: 1   MSVDFNTVASEFCNFYYQQFDSDRTQLGNLYREQSMLTFETSQLQGAKDIVEKLVSLPFQ 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           +  H +ST+D QP S  G IL+ V+G L + +E++  RYSQ+FHL+P    + +V NDIF
Sbjct: 61  KVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDG-NSYYVFNDIF 120

Query: 121 RLNY 125
           RLNY
Sbjct: 121 RLNY 123

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BLAST of Lsi02G006270.1 vs. TrEMBL
Match: A0A0A0LUU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064690 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-58
Identity = 113/125 (90.40%), Postives = 119/125 (95.20%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           MEEE +IIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGV DISSKLQQLPFE
Sbjct: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           RCRH+VST+DTQPSS  GSILIFVSGS+E+PEEEH LR+SQMFHLVPSP GNLFVQNDIF
Sbjct: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

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BLAST of Lsi02G006270.1 vs. TrEMBL
Match: M5X1T8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb011119mg PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.8e-49
Identity = 90/125 (72.00%), Postives = 113/125 (90.40%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           MEE+AE++G+AFV+HYY LFD ERASLSSLYQP SML+FEGQ+I GVDDI+SKL QLPF+
Sbjct: 1   MEEQAEMVGRAFVDHYYHLFDTERASLSSLYQPTSMLSFEGQKIFGVDDITSKLNQLPFD 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           +C+H++ST+D+QPSS  G I++FVSGSL+LP EEH LR+SQMFHL+P+P G+ F+QNDIF
Sbjct: 61  QCKHLISTIDSQPSSPTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPTPQGSFFLQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

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BLAST of Lsi02G006270.1 vs. TrEMBL
Match: A0A067JAJ9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21258 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-47
Identity = 89/125 (71.20%), Postives = 110/125 (88.00%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           MEE+ E+IGKAFV HYYQLFDN+R +L+SLYQP SML+FEGQ+ILGV+DIS+KL  LPF+
Sbjct: 1   MEEQVELIGKAFVNHYYQLFDNDRLALASLYQPSSMLSFEGQKILGVNDISAKLNDLPFD 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           +C+H++ST+D+QPSS  G I++FVSGSL+LP EEH LR+SQMFHL+P   G LFVQNDIF
Sbjct: 61  QCKHVISTIDSQPSSFAGGIVVFVSGSLQLPGEEHLLRFSQMFHLIPEQQGGLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of Lsi02G006270.1 vs. TrEMBL
Match: B9RXQ5_RICCO (Nuclear transport factor, putative OS=Ricinus communis GN=RCOM_0905640 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-47
Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           MEE+ E +GKAFV HYY LFDN+R+SL+SLY P SMLTFEGQ+ILGVDDISSKL  LPF+
Sbjct: 1   MEEQVETVGKAFVNHYYNLFDNDRSSLASLYHPSSMLTFEGQKILGVDDISSKLNNLPFD 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           +C+H +ST+DTQPSS  G I++FVSGSL+L  EEH LR+SQMFHL+PS  G LFVQNDIF
Sbjct: 61  QCKHAISTIDTQPSSFAGGIVVFVSGSLQLAGEEHPLRFSQMFHLIPSVQGGLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of Lsi02G006270.1 vs. TrEMBL
Match: A0A061GNE0_THECC (NTF2-like OS=Theobroma cacao GN=TCM_030170 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.0e-46
Identity = 87/125 (69.60%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           MEE+ +++GKAFV+HYY LFDN+R +LSSLYQP SMLTFEGQ+I GVDDI++KL QLPF+
Sbjct: 1   MEEQVDLVGKAFVDHYYHLFDNDRPALSSLYQPTSMLTFEGQKIQGVDDIAAKLNQLPFD 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           +CRH +ST+D+QP S  G I++FVSGSL+LP EEH LR+SQMFHL+P   G+ FVQNDIF
Sbjct: 61  QCRHEISTIDSQPCSFTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPMLQGSFFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of Lsi02G006270.1 vs. TAIR10
Match: AT1G11570.2 (AT1G11570.2 NTF2-like)

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-41
Identity = 78/123 (63.41%), Postives = 99/123 (80.49%), Query Frame = 1


Query: 6   EIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCRHI 65
           E +  AFV HYY LFDN+R+SLSSLY P S+LTFEGQ I GVD+IS+KL+QLPF++C H+
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 66  VSTVDTQPSS---ALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIFRL 125
           +STVD+QPSS     G IL+FVSGS++L  E+H LR+SQ FHL+P   G+ FVQN++FRL
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRL 129

[Close]

BLAST of Lsi02G006270.1 vs. TAIR10
Match: AT1G27970.2 (AT1G27970.2 nuclear transport factor 2B)

HSP 1 Score: 144.1 bits (362), Expect = 6.0e-35
Identity = 66/117 (56.41%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 4   EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCR 63
           + + + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+
Sbjct: 5   DPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCK 64

Query: 64  HIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 121
           H +STVD QPS     +L+FVSG+L+L  EEH L++SQMFHL+P+P G+ +V NDIF
Sbjct: 65  HHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121

[Close]

BLAST of Lsi02G006270.1 vs. TAIR10
Match: AT1G27310.1 (AT1G27310.1 nuclear transport factor 2A)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-34
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = 1


Query: 4   EAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFERCR 63
           + + + KAFVEHYY  FD  R  L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+
Sbjct: 2   DPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCK 61

Query: 64  HIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIFRLN 123
           H ++TVD QPS   G +L+FVSG+L+L  E+H L++SQMFHL+ S  GN +V NDIFRLN
Sbjct: 62  HNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRLN 121

Query: 124 Y 125
           Y
Sbjct: 122 Y 121

[Close]

BLAST of Lsi02G006270.1 vs. TAIR10
Match: AT5G60980.2 (AT5G60980.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain)

HSP 1 Score: 57.0 bits (136), Expect = 9.7e-09
Identity = 38/122 (31.15%), Postives = 58/122 (47.54%), Query Frame = 1


Query: 5   AEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEG-----QQILGVDDISSKLQQLPF 64
           AE++G+AFVE YY +       +   YQ  S LT          +  +  I+ K+  L +
Sbjct: 12  AEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLKY 71

Query: 65  ERCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDI 122
           E     + T D Q S   G +++ V+G L    +  + ++SQ F L P   G  FV ND+
Sbjct: 72  EDYTAEIETADAQESHERG-VIVLVTGRL-TGNDNVRKKFSQSFFLAPQDKG-YFVLNDV 130

[Close]

BLAST of Lsi02G006270.1 vs. NCBI nr
Match: gi|449472651|ref|XP_004153658.1| (PREDICTED: nuclear transport factor 2 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.6e-58
Identity = 113/125 (90.40%), Postives = 119/125 (95.20%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           MEEE +IIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGV DISSKLQQLPFE
Sbjct: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           RCRH+VST+DTQPSS  GSILIFVSGS+E+PEEEH LR+SQMFHLVPSP GNLFVQNDIF
Sbjct: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of Lsi02G006270.1 vs. NCBI nr
Match: gi|659067809|ref|XP_008441397.1| (PREDICTED: nuclear transport factor 2 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 4.0e-57
Identity = 110/124 (88.71%), Postives = 118/124 (95.16%), Query Frame = 1


Query: 2   EEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFER 61
           EE+ +IIGKAFVEHYY LFDNERASLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPFER
Sbjct: 3   EEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPFER 62

Query: 62  CRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIFR 121
           CRH+VST+DTQPSS  GSILIFVSGS+E+PEEEH LRYSQMFHLVPSP GNLFVQNDIFR
Sbjct: 63  CRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDIFR 122

Query: 122 LNYG 126
           LNYG
Sbjct: 123 LNYG 126

[Close]

BLAST of Lsi02G006270.1 vs. NCBI nr
Match: gi|645236543|ref|XP_008224788.1| (PREDICTED: nuclear transport factor 2 [Prunus mume])

HSP 1 Score: 202.2 bits (513), Expect = 5.3e-49
Identity = 91/125 (72.80%), Postives = 113/125 (90.40%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           MEE+AE++G+AFV+HYY LFD ERASLSSLYQP SML+FEGQ+I GVDDI+SKL QLPF+
Sbjct: 1   MEEQAEMVGRAFVDHYYHLFDTERASLSSLYQPTSMLSFEGQKIFGVDDITSKLNQLPFD 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           +C+H++STVD+QPSS  G I++FVSGSL+LP EEH LR+SQMFHL+P+P G+ F+QNDIF
Sbjct: 61  QCKHLISTVDSQPSSPTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPTPQGSFFLQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of Lsi02G006270.1 vs. NCBI nr
Match: gi|595909807|ref|XP_007214294.1| (hypothetical protein PRUPE_ppb011119mg [Prunus persica])

HSP 1 Score: 201.8 bits (512), Expect = 6.9e-49
Identity = 90/125 (72.00%), Postives = 113/125 (90.40%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           MEE+AE++G+AFV+HYY LFD ERASLSSLYQP SML+FEGQ+I GVDDI+SKL QLPF+
Sbjct: 1   MEEQAEMVGRAFVDHYYHLFDTERASLSSLYQPTSMLSFEGQKIFGVDDITSKLNQLPFD 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           +C+H++ST+D+QPSS  G I++FVSGSL+LP EEH LR+SQMFHL+P+P G+ F+QNDIF
Sbjct: 61  QCKHLISTIDSQPSSPTGGIVVFVSGSLQLPGEEHHLRFSQMFHLIPTPQGSFFLQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of Lsi02G006270.1 vs. NCBI nr
Match: gi|657983914|ref|XP_008384036.1| (PREDICTED: nuclear transport factor 2-like [Malus domestica])

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-48
Identity = 89/125 (71.20%), Postives = 111/125 (88.80%), Query Frame = 1


Query: 1   MEEEAEIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60
           MEE+AE++G+AFV+HYY LFD +RASLSSLYQP SML+FEGQ++ G +DISSKL QLPF+
Sbjct: 1   MEEQAEMVGRAFVDHYYHLFDTDRASLSSLYQPSSMLSFEGQKLFGANDISSKLNQLPFD 60

Query: 61  RCRHIVSTVDTQPSSALGSILIFVSGSLELPEEEHQLRYSQMFHLVPSPLGNLFVQNDIF 120
           +C+H++ST+D+QPSS  G I++FVSGSLELP EEH LR+SQMFHL+P+P G  FVQNDIF
Sbjct: 61  QCKHLISTIDSQPSSPSGGIVVFVSGSLELPGEEHHLRFSQMFHLIPTPEGTFFVQNDIF 120

Query: 121 RLNYG 126
           RLNYG
Sbjct: 121 RLNYG 125

The following BLAST results are available for this feature:

BLAST of Lsi02G006270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NTF2_ARATH	2.3e-36	57.85	Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1	[more]
NTF2_ORYSJ	9.6e-35	58.20	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1	[more]
NTF2_SCHPO	5.1e-28	52.63	Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...	[more]
NTF2_CANAX	1.3e-26	47.58	Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1	[more]
NTF2_DEBHA	2.4e-25	45.97	Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767...	[more]

BLAST of Lsi02G006270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUU9_CUCSA	2.5e-58	90.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064690 PE=4 SV=1	[more]
M5X1T8_PRUPE	4.8e-49	72.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb011119mg PE=4 SV=1	[more]
A0A067JAJ9_JATCU	2.0e-47	71.20	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21258 PE=4 SV=1	[more]
B9RXQ5_RICCO	2.6e-47	72.80	Nuclear transport factor, putative OS=Ricinus communis GN=RCOM_0905640 PE=4 SV=1	[more]
A0A061GNE0_THECC	5.0e-46	69.60	NTF2-like OS=Theobroma cacao GN=TCM_030170 PE=4 SV=1	[more]

BLAST of Lsi02G006270.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11570.2	1.5e-41	63.41	NTF2-like	[more]
AT1G27970.2	6.0e-35	56.41	nuclear transport factor 2B	[more]
AT1G27310.1	1.7e-34	57.02	nuclear transport factor 2A	[more]
AT5G60980.2	9.7e-09	31.15	Nuclear transport factor 2 (NTF2) family protein with RNA binding (R...	[more]

BLAST of Lsi02G006270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449472651\|ref\|XP_004153658.1\|	3.6e-58	90.40	PREDICTED: nuclear transport factor 2 [Cucumis sativus]	[more]
gi\|659067809\|ref\|XP_008441397.1\|	4.0e-57	88.71	PREDICTED: nuclear transport factor 2 [Cucumis melo]	[more]
gi\|645236543\|ref\|XP_008224788.1\|	5.3e-49	72.80	PREDICTED: nuclear transport factor 2 [Prunus mume]	[more]
gi\|595909807\|ref\|XP_007214294.1\|	6.9e-49	72.00	hypothetical protein PRUPE_ppb011119mg [Prunus persica]	[more]
gi\|657983914\|ref\|XP_008384036.1\|	4.5e-48	71.20	PREDICTED: nuclear transport factor 2-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR018222	Nuclear_transport_factor_2_euk
IPR002075	NTF2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi02G006270	Lsi02G006270	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G006270.1.three_prime_UTR.1	Lsi02G006270.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G006270.1.CDS.2	Lsi02G006270.1.CDS.2	CDS
Lsi02G006270.1.CDS.1	Lsi02G006270.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G006270.1.five_prime_UTR.1	Lsi02G006270.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi02G006270.1	Lsi02G006270.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 8..122 score: 3.7
IPR018222	Nuclear transport factor 2, eukaryote	PROFILE	PS50177	NTF2_DOMAIN	coord: 8..122 score: 30
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 1..125 score: 3.3
None	No IPR available	PANTHER	PTHR12612:SF10	NUCLEAR TRANSPORT FACTOR 2-LIKE PROTEIN	coord: 1..125 score: 3.3