Lsi02G005410.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G005410.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Aberrant panicle organization 1 protein
Location	chr02 : 4693236 .. 4694323 (+)
Sequence length	984

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATTACTCAAGACACACCCGGTACAAATTGCTCCGTTGAATCATCCAGAATTGAATGCATGGTGACAAAAATGGTATTTAAATTTTTTTTTTTCTTCATTCAGCCACGAAAATAACAACAATATTATTCGACAGGTACCTATTCGATCCATACGACGTGGCATGGTACCGGCTGTCGTTCGCTCAAATTCCGGCAGGGTTCTCACCAGTAGCTTCCTCCGGTGGCTTAATCTGCTGGGCACCGGACGACGGAGGCCCCAAGACTCTAATCCTATCAAACCCAATTCTCGGCACCTTATCTCAACTTCCCCCAACCATAAGACCACGCCTTTTCCCTTCAATCGGCCTCGCCATAACCCCATCTTCCATCGACATCACGGTGACCGGCGACGACTTAATCTCCCCTTACGCCGTCAAAAACCTCACCGCCGAAACGTTCCACATAGACGCCAGCGGCTTCTACTCCATGTGGGCCACCACCTCCACATTGCCACGTCTGTGCAGTTTCGAATCAAGCCGAATGGTCCACGTGGCAGGCAGATTATACTGCATGAACTACAGCCCATTCAGCATTCTAGCGTACGACATGTCGCACAACAACTGGTGGAAAATCCAAGCCCCAATGAGACGGTTTTTACGGTCCCCAAACTTAGTAGAAAGTCAAGGGAAATTACTGTTAATTGCAGCGGTAGAAAAAAGCAAATTAAACATCCCAAAAAGCTTAAGAGTTTGGGGGTTACAAAATTGCGGTGCCACGTGGATTGAAATGGAAAGAATGCCGCAACAATTGTACGTGCAATTTGAGGAAATGGAAAAATCGTGTGGCTTTGATTGCGTGGCGCATGGTGAATTCGTGATGGTTTTAATTAGAGGGTGTTGGGATAAAGCCGCGCTTTTGTATGACATGTCTAAGAAATTATGGCAATGGGTTCCGCCTTGTCCTTATATCGGCGGTCACGGCGGCAGCGGCGGCGGAGAGGTTTTACATGGGTTTGCTTATGAGCCTAGATTGGCAACGCCAGTTACTGGACTCATTGATCATTTCTCTATTCCCTTTCAGAATTACAACGCTAATCATCAGTGA

mRNA sequence

ATGACCACGAAAATAACAACAATATTATTCGACAGGTACCTATTCGATCCATACGACGTGGCATGGTACCGGCTGTCGTTCGCTCAAATTCCGGCAGGGTTCTCACCAGTAGCTTCCTCCGGTGGCTTAATCTGCTGGGCACCGGACGACGGAGGCCCCAAGACTCTAATCCTATCAAACCCAATTCTCGGCACCTTATCTCAACTTCCCCCAACCATAAGACCACGCCTTTTCCCTTCAATCGGCCTCGCCATAACCCCATCTTCCATCGACATCACGGTGACCGGCGACGACTTAATCTCCCCTTACGCCGTCAAAAACCTCACCGCCGAAACGTTCCACATAGACGCCAGCGGCTTCTACTCCATGTGGGCCACCACCTCCACATTGCCACGTCTGTGCAGTTTCGAATCAAGCCGAATGGTCCACGTGGCAGGCAGATTATACTGCATGAACTACAGCCCATTCAGCATTCTAGCGTACGACATGTCGCACAACAACTGGTGGAAAATCCAAGCCCCAATGAGACGGTTTTTACGGTCCCCAAACTTAGTAGAAAGTCAAGGGAAATTACTGTTAATTGCAGCGGTAGAAAAAAGCAAATTAAACATCCCAAAAAGCTTAAGAGTTTGGGGGTTACAAAATTGCGGTGCCACGTGGATTGAAATGGAAAGAATGCCGCAACAATTGTACGTGCAATTTGAGGAAATGGAAAAATCGTGTGGCTTTGATTGCGTGGCGCATGGTGAATTCGTGATGGTTTTAATTAGAGGGTGTTGGGATAAAGCCGCGCTTTTGTATGACATGTCTAAGAAATTATGGCAATGGGTTCCGCCTTGTCCTTATATCGGCGGTCACGGCGGCAGCGGCGGCGGAGAGGTTTTACATGGGTTTGCTTATGAGCCTAGATTGGCAACGCCAGTTACTGGACTCATTGATCATTTCTCTATTCCCTTTCAGAATTACAACGCTAATCATCAGTGA

Coding sequence (CDS)

ATGACCACGAAAATAACAACAATATTATTCGACAGGTACCTATTCGATCCATACGACGTGGCATGGTACCGGCTGTCGTTCGCTCAAATTCCGGCAGGGTTCTCACCAGTAGCTTCCTCCGGTGGCTTAATCTGCTGGGCACCGGACGACGGAGGCCCCAAGACTCTAATCCTATCAAACCCAATTCTCGGCACCTTATCTCAACTTCCCCCAACCATAAGACCACGCCTTTTCCCTTCAATCGGCCTCGCCATAACCCCATCTTCCATCGACATCACGGTGACCGGCGACGACTTAATCTCCCCTTACGCCGTCAAAAACCTCACCGCCGAAACGTTCCACATAGACGCCAGCGGCTTCTACTCCATGTGGGCCACCACCTCCACATTGCCACGTCTGTGCAGTTTCGAATCAAGCCGAATGGTCCACGTGGCAGGCAGATTATACTGCATGAACTACAGCCCATTCAGCATTCTAGCGTACGACATGTCGCACAACAACTGGTGGAAAATCCAAGCCCCAATGAGACGGTTTTTACGGTCCCCAAACTTAGTAGAAAGTCAAGGGAAATTACTGTTAATTGCAGCGGTAGAAAAAAGCAAATTAAACATCCCAAAAAGCTTAAGAGTTTGGGGGTTACAAAATTGCGGTGCCACGTGGATTGAAATGGAAAGAATGCCGCAACAATTGTACGTGCAATTTGAGGAAATGGAAAAATCGTGTGGCTTTGATTGCGTGGCGCATGGTGAATTCGTGATGGTTTTAATTAGAGGGTGTTGGGATAAAGCCGCGCTTTTGTATGACATGTCTAAGAAATTATGGCAATGGGTTCCGCCTTGTCCTTATATCGGCGGTCACGGCGGCAGCGGCGGCGGAGAGGTTTTACATGGGTTTGCTTATGAGCCTAGATTGGCAACGCCAGTTACTGGACTCATTGATCATTTCTCTATTCCCTTTCAGAATTACAACGCTAATCATCAGTGA

Protein sequence

MTTKITTILFDRYLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQLPPTIRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTSTLPRLCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQGKLLLIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHGEFVMVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGGSGGGEVLHGFAYEPRLATPVTGLIDHFSIPFQNYNANHQ

Homology

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BLAST of Lsi02G005410.1 vs. Swiss-Prot
Match: UFO_ARATH (Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2)

HSP 1 Score: 429.1 bits (1102), Expect = 4.3e-119
Identity = 195/311 (62.70%), Postives = 249/311 (80.06%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQLPPT 72
           +LFDP ++ WYRLSFA IP+GF P  SSGGL+ W  ++ G KT++L NP++G++SQLPP 
Sbjct: 130 FLFDPNEIRWYRLSFAYIPSGFYPSGSSGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPI 189

Query: 73  IRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTSTLPR 132
            RPRLFPSIGL++TP+SID+TV GDDLISPYAVKNL++E+FH+DA GF+S+WA TS+LPR
Sbjct: 190 SRPRLFPSIGLSVTPTSIDVTVAGDDLISPYAVKNLSSESFHVDAGGFFSLWAMTSSLPR 249

Query: 133 LCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQGKLL 192
           LCS ES +MV+V G+ YCMNYSPFS+L+Y+++ N W KIQAPMRRFLRSP+L+ES+G+L+
Sbjct: 250 LCSLESGKMVYVQGKFYCMNYSPFSVLSYEVTGNRWIKIQAPMRRFLRSPSLLESKGRLI 309

Query: 193 LIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHGEFV 252
           L+AAVEKSKLN+PKSLR+W LQ   ATW+E+ERMPQ LY QF   E   GF+CV + EFV
Sbjct: 310 LVAAVEKSKLNVPKSLRLWSLQQDNATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFV 369

Query: 253 MVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGGSGG----GEVLHGFAYEPRLATPV 312
           M+++RG      LL+D+ +K W WVPPCPY G  GGS G    GEVL GFAY+P L TPV
Sbjct: 370 MIVLRG--TSLQLLFDIVRKSWLWVPPCPYSGSGGGSSGGGSDGEVLQGFAYDPVLTTPV 429

Query: 313 TGLIDHFSIPF 320
             L+D  ++PF
Sbjct: 430 VSLLDQLTLPF 438

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BLAST of Lsi02G005410.1 vs. Swiss-Prot
Match: FBK77_ARATH (F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-10
Identity = 79/313 (25.24%), Postives = 130/313 (41.53%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQL--P 72
           Y +DP    WY      I      VASS GL+C+  +D   K + +SNPI      L  P
Sbjct: 106 YAYDPIIRKWYSFDLPCIETSNWFVASSCGLVCFMDNDCRNK-IYVSNPITKQWRTLIEP 165

Query: 73  PTIRPRLFPSIGLAITPSSIDITVTGDDL-ISPYAVKNLTAETFHIDAS-GFYS---MWA 132
           P  +   + ++  ++  ++  +        +S    K +    F  D S   YS   M  
Sbjct: 166 PGHKSTDYTAMSTSVNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLSIHLYSSETMTW 225

Query: 133 TTSTLPRLCSFESSRMVHVAGR-LYCMNYSPF-SILAYDMSHNNWWKIQAP-----MRRF 192
           TT     L  +       +    LY M YS   S   + +  +N   I +P     MR F
Sbjct: 226 TTLVNDVLSGWRGGNESVICNNVLYFMIYSTGGSDHRHGLIASNLSSIGSPSSGILMRSF 285

Query: 193 LRSP------NLVESQGKLLLIAAVEK-SKLNIPKSLRVWGLQNCGATWIEMERMPQQLY 252
           +  P       L+  + +L+++  + K  +  + K + +W L+  G  W+EM +MPQ+ +
Sbjct: 286 IPMPCSLTCGRLMNLRERLVIVGGIGKHDRPEVIKGIGIWVLK--GKEWVEMAKMPQRFF 345

Query: 253 VQFEEMEKSCGFDCVAHGEFVMVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGGSGG 305
             F E ++       + G   +V I+     A L +DM+ K W+W   CP          
Sbjct: 346 QGFGEFDEV----FASSGTDDLVYIQSYGSPALLTFDMNLKYWRWSQKCPVT----KKFP 405

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BLAST of Lsi02G005410.1 vs. TrEMBL
Match: A0A0A0LU03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056950 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 8.4e-178
Identity = 298/319 (93.42%), Postives = 307/319 (96.24%), Query Frame = 1


Query: 10  FDRYLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQL 69
           ++ YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPD+GGPKTLILSNPILGTLSQL
Sbjct: 142 YEGYLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDEGGPKTLILSNPILGTLSQL 201

Query: 70  PPTIRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTST 129
           PPT RPRLFPSIG AITPSSIDITV GDDLISPYAVKNLTAETFHIDA+GFYSMWATTST
Sbjct: 202 PPTTRPRLFPSIGFAITPSSIDITVAGDDLISPYAVKNLTAETFHIDATGFYSMWATTST 261

Query: 130 LPRLCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQG 189
           LPRLCSFESSRMVHV GRLY MNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQG
Sbjct: 262 LPRLCSFESSRMVHVGGRLYSMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQG 321

Query: 190 KLLLIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHG 249
           KLLLIAAVEKSKLNIPKSLR+WGLQ+CG TWIEMERMPQQLYVQFEE+EKSCGF+CVAHG
Sbjct: 322 KLLLIAAVEKSKLNIPKSLRIWGLQSCGTTWIEMERMPQQLYVQFEELEKSCGFECVAHG 381

Query: 250 EFVMVLIRGCWDKAALLYDMSKKLWQWVPPCPYIG-GHGGSGGGEVLHGFAYEPRLATPV 309
           EFVMVLIRGCWDKAALLYDM+KKLWQWVPPCPYIG   GG GG EVLHGFAYEPRLATPV
Sbjct: 382 EFVMVLIRGCWDKAALLYDMAKKLWQWVPPCPYIGTAGGGRGGEEVLHGFAYEPRLATPV 441

Query: 310 TGLIDHFSIPFQNYNANHQ 328
           TGLIDHFSIPFQNYNANHQ
Sbjct: 442 TGLIDHFSIPFQNYNANHQ 460

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BLAST of Lsi02G005410.1 vs. TrEMBL
Match: F6HFT8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01220 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 6.1e-136
Identity = 225/315 (71.43%), Postives = 266/315 (84.44%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQLPPT 72
           YLFDPY  +WYRLSF+ IP+GFSP +SSGGLICW  D+ GPK L L NP++G+LSQLPPT
Sbjct: 123 YLFDPYSNSWYRLSFSLIPSGFSPASSSGGLICWVSDEAGPKGLFLCNPLVGSLSQLPPT 182

Query: 73  IRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTSTLPR 132
           +RPRLFPSIGL +TPSSID+ V GDDLISPYAVKNLT E+FHID  GFYS+W TTS+LPR
Sbjct: 183 LRPRLFPSIGLTVTPSSIDVAVAGDDLISPYAVKNLTTESFHIDGGGFYSIWGTTSSLPR 242

Query: 133 LCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQGKLL 192
           LCS ES RMVHV GR YCMNYSPFS+LAYD++ NNWWKIQAPMRRFLRSP+LVES+G+L+
Sbjct: 243 LCSLESGRMVHVQGRFYCMNYSPFSVLAYDIAANNWWKIQAPMRRFLRSPSLVESRGRLI 302

Query: 193 LIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHGEFV 252
           L+A VEKSKLN+PKSLR+WGLQ CG TW+E+ERMPQQLY+QF E+E S GFDCV HGEF+
Sbjct: 303 LVATVEKSKLNVPKSLRIWGLQACGTTWVEIERMPQQLYLQFAEVEGSQGFDCVGHGEFI 362

Query: 253 MVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGG----SGGGEVLHGFAYEPRLATPV 312
            ++IRG  DK ALL+++  K WQW+PPCP++ G GG    SG G  LHGFAYEPRLATPV
Sbjct: 363 AIMIRGS-DK-ALLFNIYGKTWQWIPPCPFLSGSGGSSSSSGEGCELHGFAYEPRLATPV 422

Query: 313 TGLIDHFSIPFQNYN 324
           T L+D  ++PFQ +N
Sbjct: 423 TTLLDQLTLPFQPFN 435

[Close]

BLAST of Lsi02G005410.1 vs. TrEMBL
Match: A5BDR7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029540 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 6.1e-136
Identity = 225/315 (71.43%), Postives = 266/315 (84.44%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQLPPT 72
           YLFDPY  +WYRLSF+ IP+GFSP +SSGGLICW  D+ GPK L L NP++G+LSQLPPT
Sbjct: 46  YLFDPYSNSWYRLSFSLIPSGFSPASSSGGLICWVSDEAGPKGLFLCNPLVGSLSQLPPT 105

Query: 73  IRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTSTLPR 132
           +RPRLFPSIGL +TPSSID+ V GDDLISPYAVKNLT E+FHID  GFYS+W TTS+LPR
Sbjct: 106 LRPRLFPSIGLTVTPSSIDVAVAGDDLISPYAVKNLTTESFHIDGGGFYSIWGTTSSLPR 165

Query: 133 LCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQGKLL 192
           LCS ES RMVHV GR YCMNYSPFS+LAYD++ NNWWKIQAPMRRFLRSP+LVES+G+L+
Sbjct: 166 LCSLESGRMVHVQGRFYCMNYSPFSVLAYDIAANNWWKIQAPMRRFLRSPSLVESRGRLI 225

Query: 193 LIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHGEFV 252
           L+A VEKSKLN+PKSLR+WGLQ CG TW+E+ERMPQQLY+QF E+E S GFDCV HGEF+
Sbjct: 226 LVATVEKSKLNVPKSLRIWGLQACGTTWVEIERMPQQLYLQFAEVEGSQGFDCVGHGEFI 285

Query: 253 MVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGG----SGGGEVLHGFAYEPRLATPV 312
            ++IRG  DK ALL+++  K WQW+PPCP++ G GG    SG G  LHGFAYEPRLATPV
Sbjct: 286 AIMIRGS-DK-ALLFNIYGKTWQWIPPCPFLSGSGGSSSSSGEGCELHGFAYEPRLATPV 345

Query: 313 TGLIDHFSIPFQNYN 324
           T L+D  ++PFQ +N
Sbjct: 346 TTLLDQLTLPFQPFN 358

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BLAST of Lsi02G005410.1 vs. TrEMBL
Match: W9QWN7_9ROSA (Protein UNUSUAL FLORAL ORGANS OS=Morus notabilis GN=L484_009860 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 5.7e-134
Identity = 225/320 (70.31%), Postives = 271/320 (84.69%), Query Frame = 1


Query: 6   TTILFDRYLFDPYDVAWYRLSFAQ-IPAGFSPVASSGGLICWAPDDGGPKTLILSNPILG 65
           TT   + +LFDPYD++WY+LS +  IP+GFSP +SSGGLIC+   + GPK LIL NPILG
Sbjct: 123 TTSCAEAFLFDPYDLSWYKLSLSDLIPSGFSPASSSGGLICYVSCEAGPKGLILCNPILG 182

Query: 66  TLSQLPPTIRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMW 125
           +L Q+PPT+RPRLFPSIGLA++P+SID+T+ GDDLISPYAVKNLT+E+FHID  GFYS+W
Sbjct: 183 SLIQIPPTLRPRLFPSIGLAVSPTSIDVTIAGDDLISPYAVKNLTSESFHIDGGGFYSLW 242

Query: 126 ATTSTLPRLCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNL 185
            T+S+LPRLCSFES RMVHV GR Y MNYSPFSILA+D+S N+WWKIQAPMRRFLRSP+L
Sbjct: 243 GTSSSLPRLCSFESGRMVHVEGRFYSMNYSPFSILAHDISSNSWWKIQAPMRRFLRSPSL 302

Query: 186 VESQGKLLLIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFD 245
           VES+GKLLL+AAVEKS+LN+PKSLR+WGLQ CG TW EMERMPQQLY+QF E+E   GF 
Sbjct: 303 VESKGKLLLVAAVEKSQLNVPKSLRIWGLQPCGITWFEMERMPQQLYIQFAEVENGNGFY 362

Query: 246 CVAHGEFVMVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGGSGGGEVLHGFAYEPRL 305
           CV HGEFV++++ G   + ALL+ M  K WQW+PPCPY+ G GG GGGE LHGFAYEPRL
Sbjct: 363 CVGHGEFVVLIVVG--TEKALLFHMGTKRWQWIPPCPYVNGGGGGGGGE-LHGFAYEPRL 422

Query: 306 ATPVTGLIDHFSIPF-QNYN 324
           ATPVTGL+D  ++PF Q+YN
Sbjct: 423 ATPVTGLLDQLTLPFHQSYN 439

[Close]

BLAST of Lsi02G005410.1 vs. TrEMBL
Match: A0A059CAS8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04314 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 4.8e-133
Identity = 216/318 (67.92%), Postives = 269/318 (84.59%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQLPPT 72
           YLF+PY++ W+RLSF  IP+GFSP ASSGGL+CW  D+ G K+LIL NP++G+ + LPPT
Sbjct: 128 YLFNPYEITWHRLSFPLIPSGFSPCASSGGLLCWVSDEAGTKSLILCNPLVGSFTPLPPT 187

Query: 73  IRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTSTLPR 132
           +RPRLFPSIGL ITPSSID+ V GDDLISPYAVKNL++E+FHIDA GF+S+W TTS+LPR
Sbjct: 188 LRPRLFPSIGLTITPSSIDVAVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR 247

Query: 133 LCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQGKLL 192
           LCS ES +MV+V G+ YCMNY+PFS+LAYD+  NNW KIQAPMRRFLRSP+LVES+G+LL
Sbjct: 248 LCSLESGKMVYVEGKFYCMNYNPFSVLAYDIGSNNWCKIQAPMRRFLRSPSLVESKGRLL 307

Query: 193 LIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHGEFV 252
           L+AAVEKSKLN+PKSLR+W LQ+CG  W+EMERMP QLY+QF ++E   GFDCV +GEFV
Sbjct: 308 LVAAVEKSKLNVPKSLRIWFLQDCGTAWVEMERMPLQLYIQFADIEGGRGFDCVGNGEFV 367

Query: 253 MVLIRGCWDKAALLYDMSKKLWQWVPPCPYIG------GHGGSGGGEV-LHGFAYEPRLA 312
           +++IRGCWDK ALL+DM +K WQW+PPCP++G      G GG GGGE  LHGFAYEP+LA
Sbjct: 368 VIMIRGCWDK-ALLFDMCRKRWQWMPPCPFVGGGWGCSGGGGGGGGEFELHGFAYEPKLA 427

Query: 313 TPVTGLIDHFSIPFQNYN 324
           TPVTG++D  + P Q+++
Sbjct: 428 TPVTGMLDQLTHPLQSFS 444

[Close]

BLAST of Lsi02G005410.1 vs. TAIR10
Match: AT1G30950.1 (AT1G30950.1 F-box family protein)

HSP 1 Score: 429.1 bits (1102), Expect = 2.4e-120
Identity = 195/311 (62.70%), Postives = 249/311 (80.06%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQLPPT 72
           +LFDP ++ WYRLSFA IP+GF P  SSGGL+ W  ++ G KT++L NP++G++SQLPP 
Sbjct: 130 FLFDPNEIRWYRLSFAYIPSGFYPSGSSGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPI 189

Query: 73  IRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTSTLPR 132
            RPRLFPSIGL++TP+SID+TV GDDLISPYAVKNL++E+FH+DA GF+S+WA TS+LPR
Sbjct: 190 SRPRLFPSIGLSVTPTSIDVTVAGDDLISPYAVKNLSSESFHVDAGGFFSLWAMTSSLPR 249

Query: 133 LCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQGKLL 192
           LCS ES +MV+V G+ YCMNYSPFS+L+Y+++ N W KIQAPMRRFLRSP+L+ES+G+L+
Sbjct: 250 LCSLESGKMVYVQGKFYCMNYSPFSVLSYEVTGNRWIKIQAPMRRFLRSPSLLESKGRLI 309

Query: 193 LIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHGEFV 252
           L+AAVEKSKLN+PKSLR+W LQ   ATW+E+ERMPQ LY QF   E   GF+CV + EFV
Sbjct: 310 LVAAVEKSKLNVPKSLRLWSLQQDNATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFV 369

Query: 253 MVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGGSGG----GEVLHGFAYEPRLATPV 312
           M+++RG      LL+D+ +K W WVPPCPY G  GGS G    GEVL GFAY+P L TPV
Sbjct: 370 MIVLRG--TSLQLLFDIVRKSWLWVPPCPYSGSGGGSSGGGSDGEVLQGFAYDPVLTTPV 429

Query: 313 TGLIDHFSIPF 320
             L+D  ++PF
Sbjct: 430 VSLLDQLTLPF 438

[Close]

BLAST of Lsi02G005410.1 vs. TAIR10
Match: AT3G61590.1 (AT3G61590.1 Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-11
Identity = 79/313 (25.24%), Postives = 130/313 (41.53%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQL--P 72
           Y +DP    WY      I      VASS GL+C+  +D   K + +SNPI      L  P
Sbjct: 106 YAYDPIIRKWYSFDLPCIETSNWFVASSCGLVCFMDNDCRNK-IYVSNPITKQWRTLIEP 165

Query: 73  PTIRPRLFPSIGLAITPSSIDITVTGDDL-ISPYAVKNLTAETFHIDAS-GFYS---MWA 132
           P  +   + ++  ++  ++  +        +S    K +    F  D S   YS   M  
Sbjct: 166 PGHKSTDYTAMSTSVNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLSIHLYSSETMTW 225

Query: 133 TTSTLPRLCSFESSRMVHVAGR-LYCMNYSPF-SILAYDMSHNNWWKIQAP-----MRRF 192
           TT     L  +       +    LY M YS   S   + +  +N   I +P     MR F
Sbjct: 226 TTLVNDVLSGWRGGNESVICNNVLYFMIYSTGGSDHRHGLIASNLSSIGSPSSGILMRSF 285

Query: 193 LRSP------NLVESQGKLLLIAAVEK-SKLNIPKSLRVWGLQNCGATWIEMERMPQQLY 252
           +  P       L+  + +L+++  + K  +  + K + +W L+  G  W+EM +MPQ+ +
Sbjct: 286 IPMPCSLTCGRLMNLRERLVIVGGIGKHDRPEVIKGIGIWVLK--GKEWVEMAKMPQRFF 345

Query: 253 VQFEEMEKSCGFDCVAHGEFVMVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGGSGG 305
             F E ++       + G   +V I+     A L +DM+ K W+W   CP          
Sbjct: 346 QGFGEFDEV----FASSGTDDLVYIQSYGSPALLTFDMNLKYWRWSQKCPVT----KKFP 405

[Close]

BLAST of Lsi02G005410.1 vs. NCBI nr
Match: gi|778658257|ref|XP_004145206.2| (PREDICTED: protein UNUSUAL FLORAL ORGANS [Cucumis sativus])

HSP 1 Score: 630.9 bits (1626), Expect = 1.2e-177
Identity = 298/319 (93.42%), Postives = 307/319 (96.24%), Query Frame = 1


Query: 10  FDRYLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQL 69
           ++ YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPD+GGPKTLILSNPILGTLSQL
Sbjct: 142 YEGYLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDEGGPKTLILSNPILGTLSQL 201

Query: 70  PPTIRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTST 129
           PPT RPRLFPSIG AITPSSIDITV GDDLISPYAVKNLTAETFHIDA+GFYSMWATTST
Sbjct: 202 PPTTRPRLFPSIGFAITPSSIDITVAGDDLISPYAVKNLTAETFHIDATGFYSMWATTST 261

Query: 130 LPRLCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQG 189
           LPRLCSFESSRMVHV GRLY MNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQG
Sbjct: 262 LPRLCSFESSRMVHVGGRLYSMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQG 321

Query: 190 KLLLIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHG 249
           KLLLIAAVEKSKLNIPKSLR+WGLQ+CG TWIEMERMPQQLYVQFEE+EKSCGF+CVAHG
Sbjct: 322 KLLLIAAVEKSKLNIPKSLRIWGLQSCGTTWIEMERMPQQLYVQFEELEKSCGFECVAHG 381

Query: 250 EFVMVLIRGCWDKAALLYDMSKKLWQWVPPCPYIG-GHGGSGGGEVLHGFAYEPRLATPV 309
           EFVMVLIRGCWDKAALLYDM+KKLWQWVPPCPYIG   GG GG EVLHGFAYEPRLATPV
Sbjct: 382 EFVMVLIRGCWDKAALLYDMAKKLWQWVPPCPYIGTAGGGRGGEEVLHGFAYEPRLATPV 441

Query: 310 TGLIDHFSIPFQNYNANHQ 328
           TGLIDHFSIPFQNYNANHQ
Sbjct: 442 TGLIDHFSIPFQNYNANHQ 460

[Close]

BLAST of Lsi02G005410.1 vs. NCBI nr
Match: gi|659067608|ref|XP_008440352.1| (PREDICTED: LOW QUALITY PROTEIN: protein UNUSUAL FLORAL ORGANS-like [Cucumis melo])

HSP 1 Score: 623.2 bits (1606), Expect = 2.5e-175
Identity = 294/319 (92.16%), Postives = 305/319 (95.61%), Query Frame = 1


Query: 10  FDRYLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQL 69
           ++ YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPD+GGPKTLILSNPILGTL QL
Sbjct: 142 YEGYLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDEGGPKTLILSNPILGTLCQL 201

Query: 70  PPTIRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTST 129
           PPT RPRLFPSIG AITPSSIDITV GDDLISPYAVKNLTAE+FHIDA+GFYSMWATTST
Sbjct: 202 PPTTRPRLFPSIGFAITPSSIDITVAGDDLISPYAVKNLTAESFHIDATGFYSMWATTST 261

Query: 130 LPRLCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQG 189
           LPRLCSFESSRMVHVAGRLY MNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQG
Sbjct: 262 LPRLCSFESSRMVHVAGRLYSMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQG 321

Query: 190 KLLLIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHG 249
           KLLLIAAVEKSKLN PKSLR+WGLQ+CG TWIEM+RMPQQLYVQFEE+EKSCGF+CVAHG
Sbjct: 322 KLLLIAAVEKSKLNTPKSLRIWGLQSCGTTWIEMQRMPQQLYVQFEELEKSCGFECVAHG 381

Query: 250 EFVMVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGGS-GGGEVLHGFAYEPRLATPV 309
           EFVMVLIRGCWDKAALLYDM+KKLWQWVPPCPYIG  GG  GG EVLHGFAYEPRLATPV
Sbjct: 382 EFVMVLIRGCWDKAALLYDMAKKLWQWVPPCPYIGTPGGGHGGEEVLHGFAYEPRLATPV 441

Query: 310 TGLIDHFSIPFQNYNANHQ 328
           TGLIDHFSIPFQNY ANHQ
Sbjct: 442 TGLIDHFSIPFQNYTANHQ 460

[Close]

BLAST of Lsi02G005410.1 vs. NCBI nr
Match: gi|147860033|emb|CAN83132.1| (hypothetical protein VITISV_029540 [Vitis vinifera])

HSP 1 Score: 491.9 bits (1265), Expect = 8.7e-136
Identity = 225/315 (71.43%), Postives = 266/315 (84.44%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQLPPT 72
           YLFDPY  +WYRLSF+ IP+GFSP +SSGGLICW  D+ GPK L L NP++G+LSQLPPT
Sbjct: 46  YLFDPYSNSWYRLSFSLIPSGFSPASSSGGLICWVSDEAGPKGLFLCNPLVGSLSQLPPT 105

Query: 73  IRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTSTLPR 132
           +RPRLFPSIGL +TPSSID+ V GDDLISPYAVKNLT E+FHID  GFYS+W TTS+LPR
Sbjct: 106 LRPRLFPSIGLTVTPSSIDVAVAGDDLISPYAVKNLTTESFHIDGGGFYSIWGTTSSLPR 165

Query: 133 LCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQGKLL 192
           LCS ES RMVHV GR YCMNYSPFS+LAYD++ NNWWKIQAPMRRFLRSP+LVES+G+L+
Sbjct: 166 LCSLESGRMVHVQGRFYCMNYSPFSVLAYDIAANNWWKIQAPMRRFLRSPSLVESRGRLI 225

Query: 193 LIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHGEFV 252
           L+A VEKSKLN+PKSLR+WGLQ CG TW+E+ERMPQQLY+QF E+E S GFDCV HGEF+
Sbjct: 226 LVATVEKSKLNVPKSLRIWGLQACGTTWVEIERMPQQLYLQFAEVEGSQGFDCVGHGEFI 285

Query: 253 MVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGG----SGGGEVLHGFAYEPRLATPV 312
            ++IRG  DK ALL+++  K WQW+PPCP++ G GG    SG G  LHGFAYEPRLATPV
Sbjct: 286 AIMIRGS-DK-ALLFNIYGKTWQWIPPCPFLSGSGGSSSSSGEGCELHGFAYEPRLATPV 345

Query: 313 TGLIDHFSIPFQNYN 324
           T L+D  ++PFQ +N
Sbjct: 346 TTLLDQLTLPFQPFN 358

[Close]

BLAST of Lsi02G005410.1 vs. NCBI nr
Match: gi|297738022|emb|CBI27223.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 491.9 bits (1265), Expect = 8.7e-136
Identity = 225/315 (71.43%), Postives = 266/315 (84.44%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQLPPT 72
           YLFDPY  +WYRLSF+ IP+GFSP +SSGGLICW  D+ GPK L L NP++G+LSQLPPT
Sbjct: 106 YLFDPYSNSWYRLSFSLIPSGFSPASSSGGLICWVSDEAGPKGLFLCNPLVGSLSQLPPT 165

Query: 73  IRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTSTLPR 132
           +RPRLFPSIGL +TPSSID+ V GDDLISPYAVKNLT E+FHID  GFYS+W TTS+LPR
Sbjct: 166 LRPRLFPSIGLTVTPSSIDVAVAGDDLISPYAVKNLTTESFHIDGGGFYSIWGTTSSLPR 225

Query: 133 LCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQGKLL 192
           LCS ES RMVHV GR YCMNYSPFS+LAYD++ NNWWKIQAPMRRFLRSP+LVES+G+L+
Sbjct: 226 LCSLESGRMVHVQGRFYCMNYSPFSVLAYDIAANNWWKIQAPMRRFLRSPSLVESRGRLI 285

Query: 193 LIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHGEFV 252
           L+A VEKSKLN+PKSLR+WGLQ CG TW+E+ERMPQQLY+QF E+E S GFDCV HGEF+
Sbjct: 286 LVATVEKSKLNVPKSLRIWGLQACGTTWVEIERMPQQLYLQFAEVEGSQGFDCVGHGEFI 345

Query: 253 MVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGG----SGGGEVLHGFAYEPRLATPV 312
            ++IRG  DK ALL+++  K WQW+PPCP++ G GG    SG G  LHGFAYEPRLATPV
Sbjct: 346 AIMIRGS-DK-ALLFNIYGKTWQWIPPCPFLSGSGGSSSSSGEGCELHGFAYEPRLATPV 405

Query: 313 TGLIDHFSIPFQNYN 324
           T L+D  ++PFQ +N
Sbjct: 406 TTLLDQLTLPFQPFN 418

[Close]

BLAST of Lsi02G005410.1 vs. NCBI nr
Match: gi|225423605|ref|XP_002275773.1| (PREDICTED: protein UNUSUAL FLORAL ORGANS [Vitis vinifera])

HSP 1 Score: 491.9 bits (1265), Expect = 8.7e-136
Identity = 225/315 (71.43%), Postives = 266/315 (84.44%), Query Frame = 1


Query: 13  YLFDPYDVAWYRLSFAQIPAGFSPVASSGGLICWAPDDGGPKTLILSNPILGTLSQLPPT 72
           YLFDPY  +WYRLSF+ IP+GFSP +SSGGLICW  D+ GPK L L NP++G+LSQLPPT
Sbjct: 123 YLFDPYSNSWYRLSFSLIPSGFSPASSSGGLICWVSDEAGPKGLFLCNPLVGSLSQLPPT 182

Query: 73  IRPRLFPSIGLAITPSSIDITVTGDDLISPYAVKNLTAETFHIDASGFYSMWATTSTLPR 132
           +RPRLFPSIGL +TPSSID+ V GDDLISPYAVKNLT E+FHID  GFYS+W TTS+LPR
Sbjct: 183 LRPRLFPSIGLTVTPSSIDVAVAGDDLISPYAVKNLTTESFHIDGGGFYSIWGTTSSLPR 242

Query: 133 LCSFESSRMVHVAGRLYCMNYSPFSILAYDMSHNNWWKIQAPMRRFLRSPNLVESQGKLL 192
           LCS ES RMVHV GR YCMNYSPFS+LAYD++ NNWWKIQAPMRRFLRSP+LVES+G+L+
Sbjct: 243 LCSLESGRMVHVQGRFYCMNYSPFSVLAYDIAANNWWKIQAPMRRFLRSPSLVESRGRLI 302

Query: 193 LIAAVEKSKLNIPKSLRVWGLQNCGATWIEMERMPQQLYVQFEEMEKSCGFDCVAHGEFV 252
           L+A VEKSKLN+PKSLR+WGLQ CG TW+E+ERMPQQLY+QF E+E S GFDCV HGEF+
Sbjct: 303 LVATVEKSKLNVPKSLRIWGLQACGTTWVEIERMPQQLYLQFAEVEGSQGFDCVGHGEFI 362

Query: 253 MVLIRGCWDKAALLYDMSKKLWQWVPPCPYIGGHGG----SGGGEVLHGFAYEPRLATPV 312
            ++IRG  DK ALL+++  K WQW+PPCP++ G GG    SG G  LHGFAYEPRLATPV
Sbjct: 363 AIMIRGS-DK-ALLFNIYGKTWQWIPPCPFLSGSGGSSSSSGEGCELHGFAYEPRLATPV 422

Query: 313 TGLIDHFSIPFQNYN 324
           T L+D  ++PFQ +N
Sbjct: 423 TTLLDQLTLPFQPFN 435

The following BLAST results are available for this feature:

BLAST of Lsi02G005410.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UFO_ARATH	4.3e-119	62.70	Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2	[more]
FBK77_ARATH	1.9e-10	25.24	F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 S...	[more]

BLAST of Lsi02G005410.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU03_CUCSA	8.4e-178	93.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056950 PE=4 SV=1	[more]
F6HFT8_VITVI	6.1e-136	71.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01220 PE=4 SV=...	[more]
A5BDR7_VITVI	6.1e-136	71.43	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029540 PE=4 SV=1	[more]
W9QWN7_9ROSA	5.7e-134	70.31	Protein UNUSUAL FLORAL ORGANS OS=Morus notabilis GN=L484_009860 PE=4 SV=1	[more]
A0A059CAS8_EUCGR	4.8e-133	67.92	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04314 PE=4 SV=1	[more]

BLAST of Lsi02G005410.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30950.1	2.4e-120	62.70	F-box family protein	[more]
AT3G61590.1	1.1e-11	25.24	Galactose oxidase/kelch repeat superfamily protein	[more]

BLAST of Lsi02G005410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658257\|ref\|XP_004145206.2\|	1.2e-177	93.42	PREDICTED: protein UNUSUAL FLORAL ORGANS [Cucumis sativus]	[more]
gi\|659067608\|ref\|XP_008440352.1\|	2.5e-175	92.16	PREDICTED: LOW QUALITY PROTEIN: protein UNUSUAL FLORAL ORGANS-like [Cucumis melo...	[more]
gi\|147860033\|emb\|CAN83132.1\|	8.7e-136	71.43	hypothetical protein VITISV_029540 [Vitis vinifera]	[more]
gi\|297738022\|emb\|CBI27223.3\|	8.7e-136	71.43	unnamed protein product [Vitis vinifera]	[more]
gi\|225423605\|ref\|XP_002275773.1\|	8.7e-136	71.43	PREDICTED: protein UNUSUAL FLORAL ORGANS [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR015916	Galactose oxidase, beta-propeller
IPR011043	Gal_Oxase/kelch_b-propeller

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0008134	transcription factor binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi02G005410	Lsi02G005410	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G005410.1.CDS.1	Lsi02G005410.1.CDS.1	CDS
Lsi02G005410.1.CDS.2	Lsi02G005410.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi02G005410.1	Lsi02G005410.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011043	Galactose oxidase/kelch, beta-propeller	unknown	SSF50965	Galactose oxidase, central domain	coord: 13..283 score: 3.27
IPR015916	Galactose oxidase, beta-propeller	GENE3D	G3DSA:2.130.10.80		coord: 60..77 score: 9.4E-4coord: 136..282 score: 9.
None	No IPR available	PANTHER	PTHR32133	FAMILY NOT NAMED	coord: 10..317 score: 1.1E
None	No IPR available	PANTHER	PTHR32133:SF125	PROTEIN UNUSUAL FLORAL ORGANS	coord: 10..317 score: 1.1E