Lsi01G009180.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAGAAAACAAAATCATTATCAATTATCTAACCTACAGATTTTTTATTTATTTTGACCAAGTTTGAAAGGAATTCGAAATATGAATTTGAGACGAGTCTATTTTGTTTAATAAATGATATTTGATCTCGTCGTTTGTGGTATCGGCAATGATTACAAAAGGTAAAAGGCTGCATCAGCTAACACACAAACACAGCGCCCTGATCTGATCATCGTTCCCAGTTGGTGTAAGGGTTCCATTACAACACCTTGCTTTTCAGACGATTGCCAACATCATGGGCCCGACACCTAATTGCTGCTCCTGATGCTGATGCCGACTCGAATATACTTTGCTCTGTTCTTCCAAAATTCCCTTCTCTTTTCTCCAACTCTTATCTTGATCCCCGTTTCTTTCTCTTTTTCTCTGTCTAATCTCCTTTCCACCGCCGCTGCTAATTCCGCTTCATCTATCTCTTTCTGTTGAGTTATGGAGTTTTTTCTTGAACTTGCACTAACCATTAGTCTTCCTCTTCTTATTTCCCTTTTTGTTAGTAAGTTTCTTTCCAGGGGCTCAACAGATGAAGACTGGGCTCCGTTTGGTTTTGACTTTGAATTTGGATCGCGAATTCGTAATCTGGAGAGTGATAAACCTAGCGTTGTCGAAGATTTTGTCGGTGAGGATGAGATTGTAGAATGTGAACCGAAACAGGGCAATTTCACCGAAGTCCTTGAATCAAGAGATGAAAGTGAGAGGAAATGCGATGATGCGGTGATTGACTCTGGGAGGATTGTTGAAGAAAGAGTAGAGGGTGACTTTGATAATAGTGGTGGTGATTGCGGCGGAGAGGTTGCAGAGAAGGTGATCGATGAAAGTTCTGTTAGGGCGAGGTGTGAGGAAACTGGAATCAATCGGGATGAGAAAGACGTATGCGAGGGCGATGGAGTTGGGGCGTTTGAGAGTGATCGGAGCAAGGAATCTGGTGGAGTAAACGAGAGAGGATCGGTGGAGGAGATTGCCGTCGAGGATGACGATTGGGAGGGAATTGAAAGAACTGAATTGGAGAAGCTATTTGAAGCCGCAGTGGAGACTGTGAAGATTCATGATATCGAGGATCCCAAATTTGGCGGTGAATTGAAGATGCGGCTGAGCGGGCTGCACAAGATTGCTATGGAGGGGCCTTGCAGAGAACCGCCGCCAATGGCTTTGAAGATCTCTGCTCGAGCCAAATGGTAAAATGAACTCCTCTTTTCTCTCTCGTTTTTTTCTTCGATTCAGTGTATTATATCTTCTGCTCTCATGATCTACCTGCAACTCAATTATTGTTGCTGTTTTCTGGGAAATTTTCGGGAAAAGAAGATTTGAATCTCATGTAACTGTTAATCAAAACGTCAAGGTTGTGGAAATTCAAGACTAAGTGGGAAGTTATCTTTATTATAATGCACATTGCAACTCTATGATTCTCTCATGTCTAATAGTTATAGCATGGAGAAGTAGCCAATAGGTAGAAAACAAATCTTTCAAAATAATTATCATGTTTGAAGATTTTGACATTTATTAAGTTTTTGTTTGCATACAGACGACTATAAGGAAAAAGAAAGGGTGGGTTTCAAATATGATTACTAAGTTACAATTTATTCTCAGGAATTTGGATGAATTATTGACTTCACTGTTGTTGAGTTGTTTGTTTCAAAGCCTGAAAATTCATTAATAGAAGGCTCCGATTGAGAGATTGAGATGAAAATGGAAGGGTCAAGTTTCACGAATTGAGTACTATCTTCATTTAGATATGGATTGACATTAATGAGATAACTAAATCAGGATTTGGTCTAATCTTAACCGATTTAAGAACAAATTGAAAAGTTTTGATTGATTTAATAAATGTTTTCTATTTTTTGAACTTGACATCTTAGGCTTTTGTTAGCTTTGTTAAATTGGATACAAATTTTTTAAGGAATGCATGGAAGCAGCTGGGAAACATGACCCCTGAGATGGCTATGGAGAGCTATATTAACCTTGTTTCTGATAACATCCCTGGTTGGACGCCCGAAATTACTCCGGTAAGTATTTGGTTTTAATGTGAGCTCATGATTTAGGTCCAAATGATTATCAAACGGAGCGTTACTGATTTGTCACTTGAAACTCGGGTTCTTTATTCCTTCTGATTGTAGGTAAATAGTGATCAAAATGCTTCTCGTTCTCACAAGTCTGAAAAACAAGCTTCCGAAACGAAACCACTTTAATGAAGGGGAAAGGGCTCAATGTTGTGATGTCAAATGTTGATTGCTTTTTGTTTATCGATTTTCTACTGGAACTGCAACTGCAGGAAATCTGAATAACTAAAGCCTTGTTTCAACTGCAGGCAATGAAACTCAGTGATGAGGAAGCTCTATGGTGTCAAAATTCAGTTTGTATAGTCGTCCTATGCTTTGGTTCGTTCTTGGCCATTTAGCCATTTTATATGGTTTGCATTTTAGAGAACCTGGCTGTAACATAATTTATTTTTATCCATGACAATCCTGGCCGTGTTCTTGTAAATAGCAATTTGAAGTTATTTTTCCAAGGTATGAGGCTGTAAATTCCAAATAATTCCTCTATCCCTAAGTTTGGATTGATATGTGAAAATAAATTGAATCATTTGATTTTTTTTCTTTTTCTTTTTCAGTTCAATATTTGAGAATAAGAATTCAAACCTCATTGGATCATTTGATTCCAAGGTAGTAGTTGCCAAATGGTACAGAGTTTGCTGTAATTTATTTCTACACACGTTCAACC AAAAAAGAAAACAAAATCATTATCAATTATCTAACCTACAGATTTTTTATTTATTTTGACCAAGTTTGAAAGGAATTCGAAATATGAATTTGAGACGAGTCTATTTTGTTTAATAAATGATATTTGATCTCGTCGTTTGTGGTATCGGCAATGATTACAAAAGGTAAAAGGCTGCATCAGCTAACACACAAACACAGCGCCCTGATCTGATCATCGTTCCCAGTTGGTGTAAGGGTTCCATTACAACACCTTGCTTTTCAGACGATTGCCAACATCATGGGCCCGACACCTAATTGCTGCTCCTGATGCTGATGCCGACTCGAATATACTTTGCTCTGTTCTTCCAAAATTCCCTTCTCTTTTCTCCAACTCTTATCTTGATCCCCGTTTCTTTCTCTTTTTCTCTGTCTAATCTCCTTTCCACCGCCGCTGCTAATTCCGCTTCATCTATCTCTTTCTGTTGAGTTATGGAGTTTTTTCTTGAACTTGCACTAACCATTAGTCTTCCTCTTCTTATTTCCCTTTTTGTTAGTAAGTTTCTTTCCAGGGGCTCAACAGATGAAGACTGGGCTCCGTTTGGTTTTGACTTTGAATTTGGATCGCGAATTCGTAATCTGGAGAGTGATAAACCTAGCGTTGTCGAAGATTTTGTCGGTGAGGATGAGATTGTAGAATGTGAACCGAAACAGGGCAATTTCACCGAAGTCCTTGAATCAAGAGATGAAAGTGAGAGGAAATGCGATGATGCGGTGATTGACTCTGGGAGGATTGTTGAAGAAAGAGTAGAGGGTGACTTTGATAATAGTGGTGGTGATTGCGGCGGAGAGGTTGCAGAGAAGGTGATCGATGAAAGTTCTGTTAGGGCGAGGTGTGAGGAAACTGGAATCAATCGGGATGAGAAAGACGTATGCGAGGGCGATGGAGTTGGGGCGTTTGAGAGTGATCGGAGCAAGGAATCTGGTGGAGTAAACGAGAGAGGATCGGTGGAGGAGATTGCCGTCGAGGATGACGATTGGGAGGGAATTGAAAGAACTGAATTGGAGAAGCTATTTGAAGCCGCAGTGGAGACTGTGAAGATTCATGATATCGAGGATCCCAAATTTGGCGGTGAATTGAAGATGCGGCTGAGCGGGCTGCACAAGATTGCTATGGAGGGGCCTTGCAGAGAACCGCCGCCAATGGCTTTGAAGATCTCTGCTCGAGCCAAATGGAATGCATGGAAGCAGCTGGGAAACATGACCCCTGAGATGGCTATGGAGAGCTATATTAACCTTGTTTCTGATAACATCCCTGGTTGGACGCCCGAAATTACTCCGGTAAATAGTGATCAAAATGCTTCTCGTTCTCACAAGTCTGAAAAACAAGCTTCCGAAACGAAACCACTTTAATGAAGGGGAAAGGGCTCAATGTTGTGATGTCAAATGCAATGAAACTCAGTGATGAGGAAGCTCTATGGTGTCAAAATTCAGTTTGTATAGTCGTCCTATGCTTTGGTTCGTTCTTGGCCATTTAGCCATTTTATATGGTTTGCATTTTAGAGAACCTGGCTGTAACATAATTTATTTTTATCCATGACAATCCTGGCCGTGTTCTTGTAAATAGCAATTTGAAGTTATTTTTCCAAGGTATGAGGCTGTAAATTCCAAATAATTCCTCTATCCCTAAGTTTGGATTGATATGTGAAAATAAATTGAATCATTTGATTTTTTTTCTTTTTCTTTTTCAGTTCAATATTTGAGAATAAGAATTCAAACCTCATTGGATCATTTGATTCCAAGGTAGTAGTTGCCAAATGGTACAGAGTTTGCTGTAATTTATTTCTACACACGTTCAACC ATGGAGTTTTTTCTTGAACTTGCACTAACCATTAGTCTTCCTCTTCTTATTTCCCTTTTTGTTAGTAAGTTTCTTTCCAGGGGCTCAACAGATGAAGACTGGGCTCCGTTTGGTTTTGACTTTGAATTTGGATCGCGAATTCGTAATCTGGAGAGTGATAAACCTAGCGTTGTCGAAGATTTTGTCGGTGAGGATGAGATTGTAGAATGTGAACCGAAACAGGGCAATTTCACCGAAGTCCTTGAATCAAGAGATGAAAGTGAGAGGAAATGCGATGATGCGGTGATTGACTCTGGGAGGATTGTTGAAGAAAGAGTAGAGGGTGACTTTGATAATAGTGGTGGTGATTGCGGCGGAGAGGTTGCAGAGAAGGTGATCGATGAAAGTTCTGTTAGGGCGAGGTGTGAGGAAACTGGAATCAATCGGGATGAGAAAGACGTATGCGAGGGCGATGGAGTTGGGGCGTTTGAGAGTGATCGGAGCAAGGAATCTGGTGGAGTAAACGAGAGAGGATCGGTGGAGGAGATTGCCGTCGAGGATGACGATTGGGAGGGAATTGAAAGAACTGAATTGGAGAAGCTATTTGAAGCCGCAGTGGAGACTGTGAAGATTCATGATATCGAGGATCCCAAATTTGGCGGTGAATTGAAGATGCGGCTGAGCGGGCTGCACAAGATTGCTATGGAGGGGCCTTGCAGAGAACCGCCGCCAATGGCTTTGAAGATCTCTGCTCGAGCCAAATGGAATGCATGGAAGCAGCTGGGAAACATGACCCCTGAGATGGCTATGGAGAGCTATATTAACCTTGTTTCTGATAACATCCCTGGTTGGACGCCCGAAATTACTCCGGTAAATAGTGATCAAAATGCTTCTCGTTCTCACAAGTCTGAAAAACAAGCTTCCGAAACGAAACCACTTTAA MEFFLELALTISLPLLISLFVSKFLSRGSTDEDWAPFGFDFEFGSRIRNLESDKPSVVEDFVGEDEIVECEPKQGNFTEVLESRDESERKCDDAVIDSGRIVEERVEGDFDNSGGDCGGEVAEKVIDESSVRARCEETGINRDEKDVCEGDGVGAFESDRSKESGGVNERGSVEEIAVEDDDWEGIERTELEKLFEAAVETVKIHDIEDPKFGGELKMRLSGLHKIAMEGPCREPPPMALKISARAKWNAWKQLGNMTPEMAMESYINLVSDNIPGWTPEITPVNSDQNASRSHKSEKQASETKPL
BLAST of Lsi01G009180.1 vs. Swiss-Prot
Match: ACBP3_ARATH (Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 6.2e-27 Identity = 74/149 (49.66%), Postives = 92/149 (61.74%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2) HSP 1 Score: 112.8 bits (281), Expect = 6.4e-24 Identity = 58/115 (50.43%), Postives = 76/115 (66.09%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21 Identity = 56/128 (43.75%), Postives = 72/128 (56.25%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. Swiss-Prot
Match: ECI2_MOUSE (Enoyl-CoA delta isomerase 2, mitochondrial OS=Mus musculus GN=Eci2 PE=1 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 1.8e-10 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. Swiss-Prot
Match: ECI2_HUMAN (Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo sapiens GN=ECI2 PE=1 SV=4) HSP 1 Score: 67.0 bits (162), Expect = 4.1e-10 Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. TrEMBL
Match: A0A0A0KFX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494950 PE=4 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 6.3e-127 Identity = 248/309 (80.26%), Postives = 270/309 (87.38%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. TrEMBL
Match: M5VZU2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007836mg PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31 Identity = 118/294 (40.14%), Postives = 160/294 (54.42%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. TrEMBL
Match: A0A061DGU6_THECC (Acyl-CoA-binding-like protein isoform 1 OS=Theobroma cacao GN=TCM_000755 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31 Identity = 111/314 (35.35%), Postives = 160/314 (50.96%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. TrEMBL
Match: A0A061DGY9_THECC (Acyl-CoA-binding-like protein isoform 2 OS=Theobroma cacao GN=TCM_000755 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31 Identity = 111/314 (35.35%), Postives = 160/314 (50.96%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. TrEMBL
Match: A0A061DIE5_THECC (F22C12.10, putative isoform 3 OS=Theobroma cacao GN=TCM_000755 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31 Identity = 111/314 (35.35%), Postives = 160/314 (50.96%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. TAIR10
Match: AT4G24230.6 (AT4G24230.6 acyl-CoA-binding domain 3) HSP 1 Score: 122.9 bits (307), Expect = 3.5e-28 Identity = 74/149 (49.66%), Postives = 92/149 (61.74%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. TAIR10
Match: AT5G53470.1 (AT5G53470.1 acyl-CoA binding protein 1) HSP 1 Score: 112.8 bits (281), Expect = 3.6e-25 Identity = 58/115 (50.43%), Postives = 76/115 (66.09%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. TAIR10
Match: AT4G27780.1 (AT4G27780.1 acyl-CoA binding protein 2) HSP 1 Score: 105.1 bits (261), Expect = 7.6e-23 Identity = 56/128 (43.75%), Postives = 72/128 (56.25%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. TAIR10
Match: AT3G05420.2 (AT3G05420.2 acyl-CoA binding protein 4) HSP 1 Score: 53.5 bits (127), Expect = 2.6e-07 Identity = 22/67 (32.84%), Postives = 37/67 (55.22%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. NCBI nr
Match: gi|659079623|ref|XP_008440355.1| (PREDICTED: acyl-CoA-binding domain-containing protein 3 [Cucumis melo]) HSP 1 Score: 473.0 bits (1216), Expect = 3.9e-130 Identity = 255/308 (82.79%), Postives = 271/308 (87.99%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. NCBI nr
Match: gi|449448258|ref|XP_004141883.1| (PREDICTED: acyl-CoA-binding domain-containing protein 3 [Cucumis sativus]) HSP 1 Score: 461.8 bits (1187), Expect = 9.0e-127 Identity = 248/309 (80.26%), Postives = 270/309 (87.38%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. NCBI nr
Match: gi|1009145415|ref|XP_015890324.1| (PREDICTED: acyl-CoA-binding domain-containing protein 3-like [Ziziphus jujuba]) HSP 1 Score: 147.1 bits (370), Expect = 4.9e-32 Identity = 115/310 (37.10%), Postives = 161/310 (51.94%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. NCBI nr
Match: gi|719970679|ref|XP_010271995.1| (PREDICTED: acyl-CoA-binding domain-containing protein 3-like [Nelumbo nucifera]) HSP 1 Score: 145.6 bits (366), Expect = 1.4e-31 Identity = 101/243 (41.56%), Postives = 132/243 (54.32%), Query Frame = 1
BLAST of Lsi01G009180.1 vs. NCBI nr
Match: gi|595825661|ref|XP_007205442.1| (hypothetical protein PRUPE_ppa007836mg [Prunus persica]) HSP 1 Score: 144.8 bits (364), Expect = 2.4e-31 Identity = 118/294 (40.14%), Postives = 160/294 (54.42%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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