Lsi01G007450.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G007450.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Trafficking particle complex subunit 12
Location	chr01 : 5847935 .. 5849098 (+)
Sequence length	1164

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCGAGTCACCGTCACCGTCACCTGACTCTCACTCTCACAGAACTTCCGATCCCGAAACCCTAACATCAGGAATCGAGGAATTGACAATTTCCTCGGACCCTTTAACCAGTCAGTTTGGATCCCTCAACGATCTTGCTCACGAGCTTTCCTCTCTTCAAGATCTCGCCACTCGCGGCTCATGGCGTTCCATTTTAGATAAGGTTGCAAGGGCACGATCTCTCTCCCTGCTCCAGAAGCCCCATGACCACCTCACTTACCTCTCCTACAATGTCCTTGCCCTCGTCAAAATGCGCCGTTTCGCCGAAGCCTTGGCAGAACTCGATTCTCTCGAAGATCTCGATAGCTCTCAATACAGGTACGAATCTTATCCAAGCGTGTACCCTAATCGGACCGGCTCGATGGTCCCCTTTTCACTTCGGTGGCTGCACGCCCTTATCCCTATCAAAATGGGTGAGCGTCAAGATGGGTTGGACCGGTTCTACGAACTTCTGGATTTTGTACAGTCAAAACTTAAGGATAAAGAGGAGAAAAATCTCGATGTCTCTGTGAATTTGTGGAAGAAAAGGGTAGTGTTTGTGGTTAATTGTATTATTGGTCATCATTTAAGTAACAAGGAGTTTGGGGTTTGTTTAACTCTGATCAATAATTTGCTTAGTCAGGATTTCTCAGACCCTGCTTTGATTTCGAAACTTGGGTATATACAAATGCACGTTGGCGATATTGAAGGTGCAAAGCGTTCGTTTAATCGGATTGAGGAGATGGTTAAGGAGGGGAAGAGTAGTGGGTCATTGAGCGAGGTAGAGATTAAGAACCTTGTGAATAGGAACAAGGCGTTGGTGTTTTTGGTGGGTAAGGACTATCTATCAGCAGTGAGGGAATATGAGGAGTGTATCGAGAGGGACAATTCGGACGTGGTGGCCATTAACAATAAAGCTCTTTGCTTGATGTATTTGCGGGATTTAGCAGATTCAATTAAGGTGCTGGAAAATGCACTGGAAAGAGTTCCTACTGTGGCTCTCAATGAAACAGTGATCGTGAATCTGTGTAGTATGTATGAATTGGCTTACGTTAATCACTCTGAGATTAAGAGAACGCTCAATAACTGGATTGCCCGTGTTGCTCCTGATGATTTTGATTCTTCGAGTACTCGGATTTAA

mRNA sequence

ATGGAAACCGAGTCACCGTCACCGTCACCTGACTCTCACTCTCACAGAACTTCCGATCCCGAAACCCTAACATCAGGAATCGAGGAATTGACAATTTCCTCGGACCCTTTAACCAGTCAGTTTGGATCCCTCAACGATCTTGCTCACGAGCTTTCCTCTCTTCAAGATCTCGCCACTCGCGGCTCATGGCGTTCCATTTTAGATAAGGTTGCAAGGGCACGATCTCTCTCCCTGCTCCAGAAGCCCCATGACCACCTCACTTACCTCTCCTACAATGTCCTTGCCCTCGTCAAAATGCGCCGTTTCGCCGAAGCCTTGGCAGAACTCGATTCTCTCGAAGATCTCGATAGCTCTCAATACAGGTACGAATCTTATCCAAGCGTGTACCCTAATCGGACCGGCTCGATGGTCCCCTTTTCACTTCGGTGGCTGCACGCCCTTATCCCTATCAAAATGGGTGAGCGTCAAGATGGGTTGGACCGGTTCTACGAACTTCTGGATTTTGTACAGTCAAAACTTAAGGATAAAGAGGAGAAAAATCTCGATGTCTCTGTGAATTTGTGGAAGAAAAGGGTAGTGTTTGTGGTTAATTGTATTATTGGTCATCATTTAAGTAACAAGGAGTTTGGGGTTTGTTTAACTCTGATCAATAATTTGCTTAGTCAGGATTTCTCAGACCCTGCTTTGATTTCGAAACTTGGGTATATACAAATGCACGTTGGCGATATTGAAGGTGCAAAGCGTTCGTTTAATCGGATTGAGGAGATGGTTAAGGAGGGGAAGAGTAGTGGGTCATTGAGCGAGGTAGAGATTAAGAACCTTGTGAATAGGAACAAGGCGTTGGTGTTTTTGGTGGGTAAGGACTATCTATCAGCAGTGAGGGAATATGAGGAGTGTATCGAGAGGGACAATTCGGACGTGGTGGCCATTAACAATAAAGCTCTTTGCTTGATGTATTTGCGGGATTTAGCAGATTCAATTAAGGTGCTGGAAAATGCACTGGAAAGAGTTCCTACTGTGGCTCTCAATGAAACAGTGATCGTGAATCTGTGTAGTATGTATGAATTGGCTTACGTTAATCACTCTGAGATTAAGAGAACGCTCAATAACTGGATTGCCCGTGTTGCTCCTGATGATTTTGATTCTTCGAGTACTCGGATTTAA

Coding sequence (CDS)

ATGGAAACCGAGTCACCGTCACCGTCACCTGACTCTCACTCTCACAGAACTTCCGATCCCGAAACCCTAACATCAGGAATCGAGGAATTGACAATTTCCTCGGACCCTTTAACCAGTCAGTTTGGATCCCTCAACGATCTTGCTCACGAGCTTTCCTCTCTTCAAGATCTCGCCACTCGCGGCTCATGGCGTTCCATTTTAGATAAGGTTGCAAGGGCACGATCTCTCTCCCTGCTCCAGAAGCCCCATGACCACCTCACTTACCTCTCCTACAATGTCCTTGCCCTCGTCAAAATGCGCCGTTTCGCCGAAGCCTTGGCAGAACTCGATTCTCTCGAAGATCTCGATAGCTCTCAATACAGGTACGAATCTTATCCAAGCGTGTACCCTAATCGGACCGGCTCGATGGTCCCCTTTTCACTTCGGTGGCTGCACGCCCTTATCCCTATCAAAATGGGTGAGCGTCAAGATGGGTTGGACCGGTTCTACGAACTTCTGGATTTTGTACAGTCAAAACTTAAGGATAAAGAGGAGAAAAATCTCGATGTCTCTGTGAATTTGTGGAAGAAAAGGGTAGTGTTTGTGGTTAATTGTATTATTGGTCATCATTTAAGTAACAAGGAGTTTGGGGTTTGTTTAACTCTGATCAATAATTTGCTTAGTCAGGATTTCTCAGACCCTGCTTTGATTTCGAAACTTGGGTATATACAAATGCACGTTGGCGATATTGAAGGTGCAAAGCGTTCGTTTAATCGGATTGAGGAGATGGTTAAGGAGGGGAAGAGTAGTGGGTCATTGAGCGAGGTAGAGATTAAGAACCTTGTGAATAGGAACAAGGCGTTGGTGTTTTTGGTGGGTAAGGACTATCTATCAGCAGTGAGGGAATATGAGGAGTGTATCGAGAGGGACAATTCGGACGTGGTGGCCATTAACAATAAAGCTCTTTGCTTGATGTATTTGCGGGATTTAGCAGATTCAATTAAGGTGCTGGAAAATGCACTGGAAAGAGTTCCTACTGTGGCTCTCAATGAAACAGTGATCGTGAATCTGTGTAGTATGTATGAATTGGCTTACGTTAATCACTCTGAGATTAAGAGAACGCTCAATAACTGGATTGCCCGTGTTGCTCCTGATGATTTTGATTCTTCGAGTACTCGGATTTAA

Protein sequence

METESPSPSPDSHSHRTSDPETLTSGIEELTISSDPLTSQFGSLNDLAHELSSLQDLATRGSWRSILDKVARARSLSLLQKPHDHLTYLSYNVLALVKMRRFAEALAELDSLEDLDSSQYRYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKNLDVSVNLWKKRVVFVVNCIIGHHLSNKEFGVCLTLINNLLSQDFSDPALISKLGYIQMHVGDIEGAKRSFNRIEEMVKEGKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDVVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI

Homology

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BLAST of Lsi01G007450.1 vs. Swiss-Prot
Match: TPC12_HUMAN (Trafficking protein particle complex subunit 12 OS=Homo sapiens GN=TRAPPC12 PE=1 SV=3)

HSP 1 Score: 141.0 bits (354), Expect = 2.8e-32
Identity = 101/357 (28.29%), Postives = 174/357 (48.74%), Query Frame = 1


Query: 54  LQDLATRGSWRSILDKVAR---------ARSLSLLQKPHDHLTYLSYNVLALVKMRRFAE 113
           L+ L +  +WR+ +D   R          +S  L     D L      +  LVK+  F  
Sbjct: 384 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKSGLLTSHTTDSLQLWFVRLALLVKLGLFQN 443

Query: 114 ALAELDSLEDLDSSQYRYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFYE 173
           A  E +   +LD     YE YP VYP R GSMVPFS+R LHA +   +G  Q+ LDR ++
Sbjct: 444 AEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 503

Query: 174 LLDFVQSKLKDKEE-------------KNLDVSVNLWKKRVVFVVNCIIGHHLSNKEFGV 233
           +       L + E+             +    S+ LW+ R+  V+  +    L  K++ +
Sbjct: 504 VKTVCSKILANLEQGLAEDGGMSSVTQEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVL 563

Query: 234 CLTLINNLLSQ-DFSDPALISKLGYIQMHVGDIEGAKRSFNRIEEMVKEGKSSGSLSEVE 293
            +   ++++      +P L+S +G I + +GDI+ A++ F  +E++ ++      L  ++
Sbjct: 564 AVEAYHSVIKYYPEQEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQK------LDGLQ 623

Query: 294 IKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDVVAINNKALCLMYLRDLADSIKVL 353
            K +V  N A + L   ++  A R + E +  D  + VA NN A+CL+YL  L DS++ L
Sbjct: 624 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQL 683

Query: 354 ENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 388
           E  +++ P   L+E+V+ NL +MYEL      + K+ L   +A    D F++   ++
Sbjct: 684 EAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQALLEAVAGKEGDSFNTQCLKL 734

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BLAST of Lsi01G007450.1 vs. Swiss-Prot
Match: TPC12_MOUSE (Trafficking protein particle complex subunit 12 OS=Mus musculus GN=Trappc12 PE=1 SV=2)

HSP 1 Score: 139.8 bits (351), Expect = 6.2e-32
Identity = 105/360 (29.17%), Postives = 179/360 (49.72%), Query Frame = 1


Query: 54  LQDLATRGSWRSILDKVARARSL-------SLLQKPH--DHLTYLSYNVLALVKMRRFAE 113
           L+ L +  +WR+ +D   R  +        + L   H  D L      +  LVK+  F  
Sbjct: 446 LKQLISCRNWRAAVDLCGRLLTAHGQGYGKNGLPTSHTTDSLQLWFVRLALLVKLGLFQN 505

Query: 114 ALAELDSLEDLDSSQYRYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFYE 173
           A  E +   +LD     YE YP VYP R GSMVPFS+R LHA +   +G  Q+ LDR + 
Sbjct: 506 AEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHR 565

Query: 174 LLDFVQSKLKDKEE-------------KNLDVSVNLWKKRVVFVVNCIIGHHLSNKEFGV 233
           +       L + E+             ++   SV LW+ R+  V+  +    L  K++ +
Sbjct: 566 VKTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRSRLGRVLYSMANCLLLMKDYVL 625

Query: 234 C----LTLINNLLSQDFSDPALISKLGYIQMHVGDIEGAKRSFNRIEEMVKEGKSSGSLS 293
                LT+I     Q+   P L+S +G I + +GDI+ A++ F  +E++ ++      L 
Sbjct: 626 AVDAYLTVIKYYPEQE---PQLLSGIGRILLQIGDIKTAEKYFQDVEKVTQK------LD 685

Query: 294 EVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDVVAINNKALCLMYLRDLADSI 353
            ++ K +V  N+A ++L   ++  A + + E +  D ++ VA NN A+CL+YL  L DS+
Sbjct: 686 GLQGKIMVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSL 745

Query: 354 KVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 388
           + LE  +++ P   L+E+V+ NL +MYEL      + K++L   +A    D F++   ++
Sbjct: 746 RQLEAMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQSLLEAVASKEGDSFNTQCLKL 796

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BLAST of Lsi01G007450.1 vs. TrEMBL
Match: A0A0A0KGA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500620 PE=4 SV=1)

HSP 1 Score: 720.7 bits (1859), Expect = 9.5e-205
Identity = 366/387 (94.57%), Postives = 378/387 (97.67%), Query Frame = 1


Query: 1   METESPSPSPDSHSHRTSDPETLTSGIEELTISSDPLTSQFGSLNDLAHELSSLQDLATR 60
           METESPSPSPDSHSH TSDPETLT+G E L ISSDPLT+QFGSLNDLAH+L SLQDLATR
Sbjct: 1   METESPSPSPDSHSHSTSDPETLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATR 60

Query: 61  GSWRSILDKVARARSLSLLQKPHDHLTYLSYNVLALVKMRRFAEALAELDSLEDLDSSQY 120
           GSWRSILDKVARAR+L+LLQKPHDHLTYLSYNVLALVK+RRFAEALAELDSLEDL+SSQY
Sbjct: 61  GSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQY 120

Query: 121 RYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKN 180
           RYESYPSVYPNRTGSMVPFSLRWL ALIPIKMGERQ GLDRFYELLDFVQSKLKDKEEK 
Sbjct: 121 RYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKK 180

Query: 181 LDVSVNLWKKRVVFVVNCIIGHHLSNKEFGVCLTLINNLLSQDFSDPALISKLGYIQMHV 240
           LDVSVNLWKKRVVFV+NCIIGHHLSNKEFGVCLTLINNLLS+DFSDPALISKLGYIQMH 
Sbjct: 181 LDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHA 240

Query: 241 GDIEGAKRSFNRIEEMVKEGKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECI 300
           GDIEGAKRSFNRIEE+VKEGKSSGSLSEVE+KNLVNRNKALVFLVGKDYLSAVREYEECI
Sbjct: 241 GDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECI 300

Query: 301 ERDNSDVVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVN 360
           ERDNSD+VAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVN
Sbjct: 301 ERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVN 360

Query: 361 HSEIKRTLNNWIARVAPDDFDSSSTRI 388
           HSEIKRTLNNWIARVAPDDFDSSSTRI
Sbjct: 361 HSEIKRTLNNWIARVAPDDFDSSSTRI 387

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BLAST of Lsi01G007450.1 vs. TrEMBL
Match: A0A061DJR3_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TCM_001171 PE=4 SV=1)

HSP 1 Score: 547.7 bits (1410), Expect = 1.1e-152
Identity = 267/357 (74.79%), Postives = 316/357 (88.52%), Query Frame = 1


Query: 33  SSDPLTSQFGSLNDLAHELSSLQDLATRGSWRSILDKVARARSLSLLQKPHDHLTYLSYN 92
           ++DPLT+QFGSLNDLAHEL+SLQDLATRGSWRSILDKV+RARSL+LL  PHDHL Y+SYN
Sbjct: 7   TTDPLTNQFGSLNDLAHELASLQDLATRGSWRSILDKVSRARSLNLLTNPHDHLIYVSYN 66

Query: 93  VLALVKMRRFAEALAELDSLEDLDSSQYRYESYPSVYPNRTGSMVPFSLRWLHALIPIKM 152
           VLAL K+RRF +A  ELDSL D +S  Y+YE+YP VYPNR+GSMVPFSLR++HA +PIK+
Sbjct: 67  VLALSKLRRFTDAANELDSLHDFNSHHYQYETYPQVYPNRSGSMVPFSLRFIHAQLPIKL 126

Query: 153 GERQDGLDRFYELLDFVQSKLKDKEEKNLDVSVNLWKKRVVFVVNCIIGHHLSNKEFGVC 212
           G RQ+GLDRFY LL+F++ K+K KE  NL+ SV +WKKR  FV+NCIIGHHL  KEF VC
Sbjct: 127 GNRQEGLDRFYLLLNFIRQKIKQKERDNLEESVKIWKKRENFVLNCIIGHHLGAKEFNVC 186

Query: 213 LTLINNLLSQDFSDPALISKLGYIQMHVGDIEGAKRSFNRIEEMVKEGKSSG--SLSEVE 272
           L LI +L++ D+SDP L+SKLGYIQM +GD+EGAK SF+ +E M+ EGK+ G   LSEVE
Sbjct: 187 LDLIKDLINHDYSDPFLVSKLGYIQMQIGDLEGAKGSFHLVETMLNEGKNGGYSFLSEVE 246

Query: 273 IKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDVVAINNKALCLMYLRDLADSIKVL 332
            +NLVNRNKALV+LVGKDY+SAVREYEECIERD++DVVAINNKALCLMYLRDL+DSIKVL
Sbjct: 247 FRNLVNRNKALVYLVGKDYVSAVREYEECIERDHADVVAINNKALCLMYLRDLSDSIKVL 306

Query: 333 ENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 388
           ENALERVPT+ALNET+++NLCSMYELAYVNHSEIKRTL+NWIARVAPDDFD+S TR+
Sbjct: 307 ENALERVPTMALNETLVINLCSMYELAYVNHSEIKRTLSNWIARVAPDDFDASCTRV 363

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BLAST of Lsi01G007450.1 vs. TrEMBL
Match: W9QL80_9ROSA (Trafficking protein particle complex subunit 12 OS=Morus notabilis GN=L484_016617 PE=4 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 1.3e-150
Identity = 272/370 (73.51%), Postives = 316/370 (85.41%), Query Frame = 1


Query: 19  DPETLTSGIEELTISSDPLTSQFGSLNDLAHELSSLQDLATRGSWRSILDKVARARSLSL 78
           DP+TLT       +S DPLT  F S NDL+HELSSL +LA RGSWRS+LDKVARARSLSL
Sbjct: 7   DPQTLT-------VSDDPLTGHFASFNDLSHELSSLHELAVRGSWRSVLDKVARARSLSL 66

Query: 79  LQKPHDHLTYLSYNVLALVKMRRFAEALAELDSLEDLDSSQYRYESYPSVYPNRTGSMVP 138
           LQKPHDHLTYLS+NV+AL+K+RRFA+A AELDSL+DLD S YRYESYP+ YPNRTGSMVP
Sbjct: 67  LQKPHDHLTYLSFNVVALIKLRRFADASAELDSLDDLDGSHYRYESYPNDYPNRTGSMVP 126

Query: 139 FSLRWLHALIPIKMGERQDGLDRFYELLDFVQSK-LKDKEEKNLDVSVNLWKKRVVFVVN 198
           FSLRW  A+IPIK+G RQDGLDR Y LLDFV++K ++ K+ K+L VS  +WK R + + N
Sbjct: 127 FSLRWCCAVIPIKLGRRQDGLDRLYALLDFVRNKVIEKKDRKDLSVSARVWKNRELLMTN 186

Query: 199 CIIGHHLSNKEFGVCLTLINNLLSQDFSDPALISKLGYIQMHVGDIEGAKRSFNRIEEMV 258
            IIG HLS KEF VCL LI  LL + F DP L+SKLGYIQM +GD+EGAK SFNR+E ++
Sbjct: 187 SIIGVHLSAKEFSVCLNLIKELLDRGFLDPILLSKLGYIQMQIGDLEGAKSSFNRVEGLM 246

Query: 259 KEGKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDVVAINNKALCL 318
           K  K+   LSE++++NLVNRNKALV+LVGKDY+SAVREYEECIERD +DVVAINNKA+CL
Sbjct: 247 K--KNDWELSEIQLENLVNRNKALVYLVGKDYVSAVREYEECIERDGADVVAINNKAICL 306

Query: 319 MYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAP 378
           MYLRDL+DSIKVLENALERVPTVALNET++VNLCSMYELAYVNHS+IKRTL+NWIARVAP
Sbjct: 307 MYLRDLSDSIKVLENALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAP 366

Query: 379 DDFDSSSTRI 388
           DDFDSS TRI
Sbjct: 367 DDFDSSCTRI 367

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BLAST of Lsi01G007450.1 vs. TrEMBL
Match: A0A067LQM4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24093 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 1.9e-149
Identity = 269/372 (72.31%), Postives = 319/372 (85.75%), Query Frame = 1


Query: 19  DPETLTSGIEELTISSDPLTSQFGSLNDLAHELSSLQDLATRGSWRSILDKVARARSLSL 78
           D +T  +  E +++SSDPL++QFGSLNDLAHEL+SLQDLA RGSWRSILDKVARARSL+L
Sbjct: 2   DADTTDTQPEPVSLSSDPLSNQFGSLNDLAHELASLQDLANRGSWRSILDKVARARSLAL 61

Query: 79  LQKPHDHLTYLSYNVLALVKMRRFAEALAELDSLEDLDSSQYRYESYPSVYPNRTGSMVP 138
           L  PHDHLTYL+YNVLA VK+RRF +AL ELDS++D DS  YRYE+YP +YP+R GSMVP
Sbjct: 62  LTTPHDHLTYLAYNVLAFVKLRRFKDALTELDSVDDFDSHHYRYETYPKIYPHRHGSMVP 121

Query: 139 FSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKNLDVSVNLWKKRVVFVVNC 198
           FSLRWLHA+IP+K+G RQ+GLDRFY LLDFV+ KLK+K+    D S  +W+ R VFV+N 
Sbjct: 122 FSLRWLHAVIPLKLGNRQEGLDRFYILLDFVRGKLKEKQ--GFDFSSKIWRNREVFVMNW 181

Query: 199 IIGHHLSNKEFGVCLTLINNLLSQDFSDPALISKLGYIQMHVGDIEGAKRSFNRIEEMVK 258
           II  HL NKEF +CL LI +L+S+   DP L+SKLG IQM +GD+EGAK SF ++E++++
Sbjct: 182 IISEHLKNKEFTICLDLIKDLVSRGNFDPVLLSKLGCIQMQIGDLEGAKGSFEKVEKLLE 241

Query: 259 E---GKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDVVAINNKAL 318
           E   G S  SLSEVE +NLVNRNKALV+LVGKDY+SAVREYEECI+RD  DVVAINNKAL
Sbjct: 242 ERIAGGSDESLSEVEFRNLVNRNKALVYLVGKDYVSAVREYEECIDRDPMDVVAINNKAL 301

Query: 319 CLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARV 378
           CLMYLRDL+DSIKVLEN+LERVPTVALNET++VNLCSMYELAYVNHS+IKRTL+NWIARV
Sbjct: 302 CLMYLRDLSDSIKVLENSLERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSNWIARV 361

Query: 379 APDDFDSSSTRI 388
           APDDFDSSSTRI
Sbjct: 362 APDDFDSSSTRI 371

[Close]

BLAST of Lsi01G007450.1 vs. TrEMBL
Match: I1MYU6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G019200 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 3.3e-149
Identity = 260/344 (75.58%), Postives = 312/344 (90.70%), Query Frame = 1


Query: 44  LNDLAHELSSLQDLATRGSWRSILDKVARARSLSLLQKPHDHLTYLSYNVLALVKMRRFA 103
           ++D  H++SSL++LA RG+WRSI+DKV+RAR+LSLL KPHDHLTYL++N L+  K+RRF 
Sbjct: 19  IDDACHDMSSLEELANRGAWRSIIDKVSRARALSLLHKPHDHLTYLAFNALSFTKLRRFN 78

Query: 104 EALAELDSLEDLDSSQYRYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFY 163
           EA AELDSLEDLDSS YRYE+YP +YPNR GSMVPFSLRWLHALIPIK+G+RQ G+DRFY
Sbjct: 79  EASAELDSLEDLDSSHYRYETYPKIYPNRIGSMVPFSLRWLHALIPIKLGQRQQGMDRFY 138

Query: 164 ELLDFVQSKLKDKEE-KNLDVSVNLWKKRVVFVVNCIIGHHLSNKEFGVCLTLINNLLSQ 223
            LLDFV+ K+K+KE+  NL VS+NLW+KR VFVVNCIIG+HLS KEFGVCL+L+  LLS+
Sbjct: 139 ILLDFVRGKIKEKEKLSNLGVSLNLWRKREVFVVNCIIGNHLSQKEFGVCLSLMKELLSR 198

Query: 224 DFSDPALISKLGYIQMHVGDIEGAKRSFNRIEEMVKEGKSSGSLSEVEIKNLVNRNKALV 283
           D SDP L+S+LGY+Q+ +GD+EGAK SF ++EE+   GKS+GSLSEVE +NLVNRNKALV
Sbjct: 199 DCSDPLLVSQLGYMQLQIGDLEGAKVSFLKVEEL---GKSNGSLSEVEFRNLVNRNKALV 258

Query: 284 FLVGKDYLSAVREYEECIERDNSDVVAINNKALCLMYLRDLADSIKVLENALERVPTVAL 343
           +LVGKDY+SAVREYEECIERD++DVVA+NNKALCLMYLRDL+DSIKVLE+ALERVPTVAL
Sbjct: 259 YLVGKDYVSAVREYEECIERDSADVVAVNNKALCLMYLRDLSDSIKVLESALERVPTVAL 318

Query: 344 NETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTR 387
           NET++VNLCSMYELAYVNHS+IKRTL+NWIARVAPDDFD+S TR
Sbjct: 319 NETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDASCTR 359

[Close]

BLAST of Lsi01G007450.1 vs. TAIR10
Match: AT4G39820.1 (AT4G39820.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 493.8 bits (1270), Expect = 9.6e-140
Identity = 233/376 (61.97%), Postives = 308/376 (81.91%), Query Frame = 1


Query: 12  SHSHRTSDPETLTSGIEELTISSDPLTSQFGSLNDLAHELSSLQDLATRGSWRSILDKVA 71
           + S    +P        ++T  +D    +F SL++L H+L SL +L+TRGSW++IL+K++
Sbjct: 33  AESTDAGEPTAFELASSQVTSVADLPPERFNSLDELTHDLGSLHELSTRGSWQAILEKIS 92

Query: 72  RARSLSLLQKPHDHLTYLSYNVLALVKMRRFAEALAELDSLEDLDSSQYRYESYPSVYPN 131
           +AR+L LL KPH+HLTYL+Y V+AL K+RR  EA  EL+SL D D + YRYES+P +YPN
Sbjct: 93  QARALFLLTKPHEHLTYLTYQVMALAKLRRSDEASHELNSLHDFDGTHYRYESFPEIYPN 152

Query: 132 RTGSMVPFSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKNLDVSVNLWKKR 191
           R GSMVPFSLRWL+ALIP K+G RQ+GLDR Y LLDFV+ ++++KE ++L+ SV LWKKR
Sbjct: 153 RRGSMVPFSLRWLYALIPTKLGNRQEGLDRLYVLLDFVRDRIREKESQSLESSVELWKKR 212

Query: 192 VVFVVNCIIGHHLSNKEFGVCLTLINNLLSQDFSDPALISKLGYIQMHVGDIEGAKRSFN 251
             FV+NC++G HL +KEFGV L L+  L+++D  DP LISKLG +QM  GD+EGAK +F+
Sbjct: 213 ETFVMNCLLGFHLGHKEFGVSLDLMKELINRDPLDPVLISKLGSVQMQFGDVEGAKTTFD 272

Query: 252 RIEEMVKEGKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDVVAIN 311
           R+E+M+ EGKS+G L+E++  NLV RNKALV++V KDY+SAVREY++CIERDNSD++A+N
Sbjct: 273 RVEKMLNEGKSNGLLNEIQFNNLVGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVN 332

Query: 312 NKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNW 371
           NKALCLMYLRDL+D+IKV+E+ALERVPT ALNE+++VNLCSMYELAYVNH+++KRTLNNW
Sbjct: 333 NKALCLMYLRDLSDAIKVMESALERVPTAALNESLVVNLCSMYELAYVNHTDVKRTLNNW 392

Query: 372 IARVAPDDFDSSSTRI 388
           IARVAPDDFDSS TR+
Sbjct: 393 IARVAPDDFDSSCTRV 408

[Close]

BLAST of Lsi01G007450.1 vs. NCBI nr
Match: gi|659080152|ref|XP_008440638.1| (PREDICTED: trafficking protein particle complex subunit 12 [Cucumis melo])

HSP 1 Score: 732.3 bits (1889), Expect = 4.5e-208
Identity = 372/387 (96.12%), Postives = 382/387 (98.71%), Query Frame = 1


Query: 1   METESPSPSPDSHSHRTSDPETLTSGIEELTISSDPLTSQFGSLNDLAHELSSLQDLATR 60
           METESPSPSPDSHSH TSDPETLT+GIE LTISSDPLT+QFGSLNDLAH+LSSLQDLATR
Sbjct: 1   METESPSPSPDSHSHSTSDPETLTTGIENLTISSDPLTTQFGSLNDLAHDLSSLQDLATR 60

Query: 61  GSWRSILDKVARARSLSLLQKPHDHLTYLSYNVLALVKMRRFAEALAELDSLEDLDSSQY 120
           GSWRSILDKVARAR+LSLLQKPHDHLTYLSYNVLALVK+RRFAEALAELDSLEDL+SSQY
Sbjct: 61  GSWRSILDKVARARALSLLQKPHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQY 120

Query: 121 RYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKN 180
           RYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEK 
Sbjct: 121 RYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKK 180

Query: 181 LDVSVNLWKKRVVFVVNCIIGHHLSNKEFGVCLTLINNLLSQDFSDPALISKLGYIQMHV 240
           LDVSVNLWKKR VFV+NCIIGHHLSNKEFGVCLTLINNLLS+DFSDPALISKLGYIQMH 
Sbjct: 181 LDVSVNLWKKREVFVINCIIGHHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHA 240

Query: 241 GDIEGAKRSFNRIEEMVKEGKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECI 300
           GDIEGAKRSFNRIEE+VKEGKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECI
Sbjct: 241 GDIEGAKRSFNRIEELVKEGKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECI 300

Query: 301 ERDNSDVVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVN 360
           ERDNSD+VAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVN
Sbjct: 301 ERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVN 360

Query: 361 HSEIKRTLNNWIARVAPDDFDSSSTRI 388
           HSEIKRTLNNWIARVAPDDFDSSSTRI
Sbjct: 361 HSEIKRTLNNWIARVAPDDFDSSSTRI 387

[Close]

BLAST of Lsi01G007450.1 vs. NCBI nr
Match: gi|449451463|ref|XP_004143481.1| (PREDICTED: trafficking protein particle complex subunit 12 [Cucumis sativus])

HSP 1 Score: 720.7 bits (1859), Expect = 1.4e-204
Identity = 366/387 (94.57%), Postives = 378/387 (97.67%), Query Frame = 1


Query: 1   METESPSPSPDSHSHRTSDPETLTSGIEELTISSDPLTSQFGSLNDLAHELSSLQDLATR 60
           METESPSPSPDSHSH TSDPETLT+G E L ISSDPLT+QFGSLNDLAH+L SLQDLATR
Sbjct: 1   METESPSPSPDSHSHSTSDPETLTTGFENLAISSDPLTTQFGSLNDLAHDLFSLQDLATR 60

Query: 61  GSWRSILDKVARARSLSLLQKPHDHLTYLSYNVLALVKMRRFAEALAELDSLEDLDSSQY 120
           GSWRSILDKVARAR+L+LLQKPHDHLTYLSYNVLALVK+RRFAEALAELDSLEDL+SSQY
Sbjct: 61  GSWRSILDKVARARALTLLQKPHDHLTYLSYNVLALVKLRRFAEALAELDSLEDLNSSQY 120

Query: 121 RYESYPSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKN 180
           RYESYPSVYPNRTGSMVPFSLRWL ALIPIKMGERQ GLDRFYELLDFVQSKLKDKEEK 
Sbjct: 121 RYESYPSVYPNRTGSMVPFSLRWLQALIPIKMGERQHGLDRFYELLDFVQSKLKDKEEKK 180

Query: 181 LDVSVNLWKKRVVFVVNCIIGHHLSNKEFGVCLTLINNLLSQDFSDPALISKLGYIQMHV 240
           LDVSVNLWKKRVVFV+NCIIGHHLSNKEFGVCLTLINNLLS+DFSDPALISKLGYIQMH 
Sbjct: 181 LDVSVNLWKKRVVFVINCIIGHHLSNKEFGVCLTLINNLLSEDFSDPALISKLGYIQMHA 240

Query: 241 GDIEGAKRSFNRIEEMVKEGKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECI 300
           GDIEGAKRSFNRIEE+VKEGKSSGSLSEVE+KNLVNRNKALVFLVGKDYLSAVREYEECI
Sbjct: 241 GDIEGAKRSFNRIEELVKEGKSSGSLSEVEMKNLVNRNKALVFLVGKDYLSAVREYEECI 300

Query: 301 ERDNSDVVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVN 360
           ERDNSD+VAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVN
Sbjct: 301 ERDNSDMVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVN 360

Query: 361 HSEIKRTLNNWIARVAPDDFDSSSTRI 388
           HSEIKRTLNNWIARVAPDDFDSSSTRI
Sbjct: 361 HSEIKRTLNNWIARVAPDDFDSSSTRI 387

[Close]

BLAST of Lsi01G007450.1 vs. NCBI nr
Match: gi|1009146533|ref|XP_015890931.1| (PREDICTED: trafficking protein particle complex subunit 12 [Ziziphus jujuba])

HSP 1 Score: 575.1 bits (1481), Expect = 9.3e-161
Identity = 293/388 (75.52%), Postives = 339/388 (87.37%), Query Frame = 1


Query: 7   SPSPDSHSHRTSDPETLTS-GIEELTISSDPLTSQFGSLNDLAHELSSLQDLATRGSWRS 66
           S SPDS   +T  PETLT   +E +T+S+DPL  QFGSLNDL HEL+SLQDLA+RGSWRS
Sbjct: 3   SDSPDS---QTRSPETLTPPDLETITLSTDPLRDQFGSLNDLTHELASLQDLASRGSWRS 62

Query: 67  ILDKVARARSLSLLQKPHDHLTYLSYNVLALVKMRRFAEALAELDSLEDLDSSQYRYESY 126
           ++DKVARARSLSLLQKPHDHLTYLSYNVLAL K+RRF EA  ELDSLEDLD S Y YESY
Sbjct: 63  VIDKVARARSLSLLQKPHDHLTYLSYNVLALTKLRRFTEASTELDSLEDLDGSHYHYESY 122

Query: 127 PSVYPNRTGSMVPFSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKN----L 186
           P+VYPNR GSMVPFSLRWLHALIPIK+G RQDGLDR Y LLDFV++K+++KE++N    L
Sbjct: 123 PNVYPNRVGSMVPFSLRWLHALIPIKLGNRQDGLDRLYFLLDFVRTKVEEKEKENDGSDL 182

Query: 187 DVSVNLWKKRVVFVVNCIIGHHLSNKEFGVCLTLINNLLSQDFSDPALISKLGYIQMHVG 246
            VSV++WKKR VFVVN IIG HL+NKEF VCL+LI  LLS+D  DP L+SKLGYIQM +G
Sbjct: 183 SVSVSVWKKREVFVVNSIIGLHLNNKEFSVCLSLIKELLSRDPGDPILVSKLGYIQMQIG 242

Query: 247 DIEGAKRSFNRIEEMVKEG--KSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEEC 306
           D+EGAK SFNR+E +++    K+ GSL+E++  NLVNRNKALV++VGKDY+SAVREYE+C
Sbjct: 243 DLEGAKSSFNRVEGLMEVSFEKNEGSLNEIQFMNLVNRNKALVYMVGKDYVSAVREYEKC 302

Query: 307 IERDNSDVVAINNKALCLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYV 366
           IERD+SDVVA+NNKALCLMYLRDL+DSIKVLENALERVPTVALNET++VNLCSMYELAYV
Sbjct: 303 IERDHSDVVALNNKALCLMYLRDLSDSIKVLENALERVPTVALNETIVVNLCSMYELAYV 362

Query: 367 NHSEIKRTLNNWIARVAPDDFDSSSTRI 388
           NHS+IKRTL+NWIARVAPDDFDSS TRI
Sbjct: 363 NHSDIKRTLSNWIARVAPDDFDSSCTRI 387

[Close]

BLAST of Lsi01G007450.1 vs. NCBI nr
Match: gi|694326603|ref|XP_009354211.1| (PREDICTED: trafficking protein particle complex subunit 12 [Pyrus x bretschneideri])

HSP 1 Score: 549.3 bits (1414), Expect = 5.4e-153
Identity = 276/372 (74.19%), Postives = 329/372 (88.44%), Query Frame = 1


Query: 17  TSDPETLTSGIEELTISSDPLTSQFGSLNDLAHELSSLQDLATRGSWRSILDKVARARSL 76
           T DP+T+T+ +E   + +DPLT QFGSLND+AHEL+SLQDLATRGSWRSILDKVARAR+ 
Sbjct: 5   TPDPQTVTTNVETPNLFTDPLTDQFGSLNDVAHELASLQDLATRGSWRSILDKVARARAQ 64

Query: 77  SLLQKPHDHLTYLSYNVLALVKMRRFAEALAELDSLEDLDSSQYRYESYPSVYPNRTGSM 136
           SLL KPHDHL Y +YNVLAL K+R F EA AE+DSLEDLDSS+Y YE+YP VYPNR GSM
Sbjct: 65  SLLNKPHDHLVYFTYNVLALTKLRSFPEASAEIDSLEDLDSSRYHYETYPKVYPNRVGSM 124

Query: 137 VPFSLRWLHALIPIKMGERQDGLDRFYELLDFVQSKLKDKEEKNLDVSVNLWKKRVVFVV 196
           VPFSLRWL+AL+PIK+G+RQ+GLDR Y LLDFV+SK+K KE+   +VSV++WK+R VFV+
Sbjct: 125 VPFSLRWLYALLPIKLGQRQEGLDRLYCLLDFVRSKIKGKEK---NVSVSVWKRREVFVM 184

Query: 197 NCIIGHHLSNKEFGVCLTLINNLLSQDFSDPALISKLGYIQMHVGDIEGAKRSFNRIEEM 256
           N IIG HLS KE  VCL+LIN+LL++D++DP L+SKLGYIQM +GD+EGAK SFN ++ +
Sbjct: 185 NGIIGVHLSQKEVSVCLSLINDLLNRDYTDPILVSKLGYIQMQMGDLEGAKSSFNVVQGL 244

Query: 257 V-KEGKSSGSLSEVEIKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDVVAINNKAL 316
           V K+GK+S      E+KNLV+RNKALV++VGKDY+SAVREYEECIER+ +DVVAINNKAL
Sbjct: 245 VEKQGKASN-----ELKNLVSRNKALVYVVGKDYVSAVREYEECIEREQNDVVAINNKAL 304

Query: 317 CLMYLRDLADSIKVLENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARV 376
           CLMYLRDL+DSIKVLENALERVPTVALNETV+VNLCSMYELAYVNH++IKRTLN+WIARV
Sbjct: 305 CLMYLRDLSDSIKVLENALERVPTVALNETVVVNLCSMYELAYVNHADIKRTLNSWIARV 364

Query: 377 APDDFDSSSTRI 388
           APDDFDSSSTRI
Sbjct: 365 APDDFDSSSTRI 368

[Close]

BLAST of Lsi01G007450.1 vs. NCBI nr
Match: gi|590707505|ref|XP_007048024.1| (Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma cacao])

HSP 1 Score: 547.7 bits (1410), Expect = 1.6e-152
Identity = 267/357 (74.79%), Postives = 316/357 (88.52%), Query Frame = 1


Query: 33  SSDPLTSQFGSLNDLAHELSSLQDLATRGSWRSILDKVARARSLSLLQKPHDHLTYLSYN 92
           ++DPLT+QFGSLNDLAHEL+SLQDLATRGSWRSILDKV+RARSL+LL  PHDHL Y+SYN
Sbjct: 7   TTDPLTNQFGSLNDLAHELASLQDLATRGSWRSILDKVSRARSLNLLTNPHDHLIYVSYN 66

Query: 93  VLALVKMRRFAEALAELDSLEDLDSSQYRYESYPSVYPNRTGSMVPFSLRWLHALIPIKM 152
           VLAL K+RRF +A  ELDSL D +S  Y+YE+YP VYPNR+GSMVPFSLR++HA +PIK+
Sbjct: 67  VLALSKLRRFTDAANELDSLHDFNSHHYQYETYPQVYPNRSGSMVPFSLRFIHAQLPIKL 126

Query: 153 GERQDGLDRFYELLDFVQSKLKDKEEKNLDVSVNLWKKRVVFVVNCIIGHHLSNKEFGVC 212
           G RQ+GLDRFY LL+F++ K+K KE  NL+ SV +WKKR  FV+NCIIGHHL  KEF VC
Sbjct: 127 GNRQEGLDRFYLLLNFIRQKIKQKERDNLEESVKIWKKRENFVLNCIIGHHLGAKEFNVC 186

Query: 213 LTLINNLLSQDFSDPALISKLGYIQMHVGDIEGAKRSFNRIEEMVKEGKSSG--SLSEVE 272
           L LI +L++ D+SDP L+SKLGYIQM +GD+EGAK SF+ +E M+ EGK+ G   LSEVE
Sbjct: 187 LDLIKDLINHDYSDPFLVSKLGYIQMQIGDLEGAKGSFHLVETMLNEGKNGGYSFLSEVE 246

Query: 273 IKNLVNRNKALVFLVGKDYLSAVREYEECIERDNSDVVAINNKALCLMYLRDLADSIKVL 332
            +NLVNRNKALV+LVGKDY+SAVREYEECIERD++DVVAINNKALCLMYLRDL+DSIKVL
Sbjct: 247 FRNLVNRNKALVYLVGKDYVSAVREYEECIERDHADVVAINNKALCLMYLRDLSDSIKVL 306

Query: 333 ENALERVPTVALNETVIVNLCSMYELAYVNHSEIKRTLNNWIARVAPDDFDSSSTRI 388
           ENALERVPT+ALNET+++NLCSMYELAYVNHSEIKRTL+NWIARVAPDDFD+S TR+
Sbjct: 307 ENALERVPTMALNETLVINLCSMYELAYVNHSEIKRTLSNWIARVAPDDFDASCTRV 363

The following BLAST results are available for this feature:

BLAST of Lsi01G007450.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPC12_HUMAN	2.8e-32	28.29	Trafficking protein particle complex subunit 12 OS=Homo sapiens GN=TRAPPC12 PE=1...	[more]
TPC12_MOUSE	6.2e-32	29.17	Trafficking protein particle complex subunit 12 OS=Mus musculus GN=Trappc12 PE=1...	[more]

BLAST of Lsi01G007450.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGA7_CUCSA	9.5e-205	94.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500620 PE=4 SV=1	[more]
A0A061DJR3_THECC	1.1e-152	74.79	Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TC...	[more]
W9QL80_9ROSA	1.3e-150	73.51	Trafficking protein particle complex subunit 12 OS=Morus notabilis GN=L484_01661...	[more]
A0A067LQM4_JATCU	1.9e-149	72.31	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24093 PE=4 SV=1	[more]
I1MYU6_SOYBN	3.3e-149	75.58	Uncharacterized protein OS=Glycine max GN=GLYMA_18G019200 PE=4 SV=1	[more]

BLAST of Lsi01G007450.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39820.1	9.6e-140	61.97	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Lsi01G007450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080152\|ref\|XP_008440638.1\|	4.5e-208	96.12	PREDICTED: trafficking protein particle complex subunit 12 [Cucumis melo]	[more]
gi\|449451463\|ref\|XP_004143481.1\|	1.4e-204	94.57	PREDICTED: trafficking protein particle complex subunit 12 [Cucumis sativus]	[more]
gi\|1009146533\|ref\|XP_015890931.1\|	9.3e-161	75.52	PREDICTED: trafficking protein particle complex subunit 12 [Ziziphus jujuba]	[more]
gi\|694326603\|ref\|XP_009354211.1\|	5.4e-153	74.19	PREDICTED: trafficking protein particle complex subunit 12 [Pyrus x bretschneide...	[more]
gi\|590707505\|ref\|XP_007048024.1\|	1.6e-152	74.79	Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004180	carboxypeptidase activity
molecular_function	GO:0004175	endopeptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi01G007450	Lsi01G007450	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G007450.1.CDS.1	Lsi01G007450.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi01G007450.1	Lsi01G007450.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 225..339 score: 5.9E-11coord: 94..117 score: 5.9
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 217..342 score: 7.59
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 273..340 score: 9
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 307..340 score: 0.32coord: 227..260 score: 260.0coord: 273..306 score: 1
None	No IPR available	unknown	Coil	Coil	coord: 159..179 scor
None	No IPR available	PANTHER	PTHR21581	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE	coord: 40..387 score: 7.8
None	No IPR available	PANTHER	PTHR21581:SF6	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 12	coord: 40..387 score: 7.8