Cucsa.377670.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.377670.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transcription factor RADIALIS
Location	scaffold03806 : 68291 .. 68534 (+)
Sequence length	244

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTtCCCTTATCGAACCTCCGGAGGTGGTAACCAAG

mRNA sequence

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAG

Coding sequence (CDS)

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTtCCCTTATCGAACCTCCGGAGGTGGTAACCAAG

Protein sequence

MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQX

Homology

[Close]

BLAST of Cucsa.377670.1 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-27
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGG 79
            IE+G VPFP YRTSGG
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of Cucsa.377670.1 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-26
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of Cucsa.377670.1 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-24
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 1


Query: 5  SSHGSGT-WTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+  +NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YRTSGG 79
          IESG+VPFP YRT+GG
Sbjct: 63 IESGKVPFPNYRTTGG 78

[Close]

BLAST of Cucsa.377670.1 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-22
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGQVPFPYRTSGGGN 81
          V  IESG+ P P   S G N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Cucsa.377670.1 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.7e-22
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of Cucsa.377670.1 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of Cucsa.377670.1 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.1e-29
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS+S+HGSG WT  QNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGQVPFPYRTS 77
          VK IESG+VPFPYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]

BLAST of Cucsa.377670.1 vs. TrEMBL
Match: A0A0D2W2J5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-28
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKTAEEVKRHY LLV DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVADV 63

Query: 62 KFIESGQVPFPYRTSG 78
          K+IESGQVPFPYR++G
Sbjct: 64 KYIESGQVPFPYRSNG 79

[Close]

BLAST of Cucsa.377670.1 vs. TrEMBL
Match: B9HRM8_POPTR (Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0009s11930g PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.0e-28
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 1


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WTV QNKAFE+ALAVYD+DTPDRW NVA+AVGGKTAEEVKRHY LLVEDV
Sbjct: 4  SSMSSRGSGSWTVQQNKAFERALAVYDRDTPDRWYNVARAVGGKTAEEVKRHYELLVEDV 63

Query: 62 KFIESGQVPFP-YRTSG 78
          K IESG VPFP YRT+G
Sbjct: 64 KHIESGHVPFPNYRTTG 80

[Close]

BLAST of Cucsa.377670.1 vs. TrEMBL
Match: A0A061E040_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.0e-28
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKTAEEVKRHY LLV+DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVQDV 63

Query: 62 KFIESGQVPFP-YRTSGGGNQ 82
          K IESGQVPFP YRTS G ++
Sbjct: 64 KHIESGQVPFPNYRTSAGNSR 84

[Close]

BLAST of Cucsa.377670.1 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-28
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGG 79
            IE+G VPFP YRTSGG
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of Cucsa.377670.1 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-27
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of Cucsa.377670.1 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 104.8 bits (260), Expect = 2.7e-23
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of Cucsa.377670.1 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-22
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGNQ 82
          +  IE   VP P Y+T   G++
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSK 82

[Close]

BLAST of Cucsa.377670.1 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-18
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS SS  + +WT  ++K FE ALA +D+DTPDRW  +A+AVGGK+ EEVKRHY LL+ D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKFIESGQVPFP-YRTS 77
          V  IESG+ P P YR +
Sbjct: 61 VNDIESGRYPQPRYRNT 76

[Close]

BLAST of Cucsa.377670.1 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of Cucsa.377670.1 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of Cucsa.377670.1 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-30
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMS+HGSG WT  QNKAFEKALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGQVPFPYRTSGG 79
          VK IESG+VPFPYRTS G
Sbjct: 61 VKHIESGKVPFPYRTSRG 78

[Close]

BLAST of Cucsa.377670.1 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS+S+HGSG WT  QNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIESGQVPFPYRTS 77
          VK IESG+VPFPYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]

BLAST of Cucsa.377670.1 vs. NCBI nr
Match: gi|823257091|ref|XP_012461179.1| (PREDICTED: protein RADIALIS-like 1 [Gossypium raimondii])

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKTAEEVKRHY LLV DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVADV 63

Query: 62 KFIESGQVPFPYRTSG 78
          K+IESGQVPFPYR++G
Sbjct: 64 KYIESGQVPFPYRSNG 79

The following BLAST results are available for this feature:

BLAST of Cucsa.377670.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL1_ARATH	3.7e-27	74.36	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL2_ARATH	2.4e-26	72.15	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RAD_ANTMA	1.7e-24	69.74	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL3_ARATH	1.6e-22	63.75	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RADL6_ARATH	4.7e-22	68.42	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]

BLAST of Cucsa.377670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K348_CUCSA	3.0e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1	[more]
A0A0A0K344_CUCSA	8.1e-29	80.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1	[more]
A0A0D2W2J5_GOSRA	1.4e-28	81.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1	[more]
B9HRM8_POPTR	4.0e-28	83.12	Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0...	[more]
A0A061E040_THECC	4.0e-28	79.01	Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1	[more]

BLAST of Cucsa.377670.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	2.1e-28	74.36	RAD-like 1	[more]
AT2G21650.1	1.4e-27	72.15	Homeodomain-like superfamily protein	[more]
AT1G75250.1	2.7e-23	68.42	RAD-like 6	[more]
AT1G19510.1	1.3e-22	63.41	RAD-like 5	[more]
AT2G18328.1	1.5e-18	58.44	RAD-like 4	[more]

BLAST of Cucsa.377670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778725458\|ref\|XP_004151125.2\|	4.2e-39	100.00	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|659092346\|ref\|XP_008447024.1\|	1.4e-37	97.53	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|659092351\|ref\|XP_008447025.1\|	2.1e-30	83.33	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|449466805\|ref\|XP_004151116.1\|	1.2e-28	80.26	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|823257091\|ref\|XP_012461179.1\|	2.0e-28	81.58	PREDICTED: protein RADIALIS-like 1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.377670	Cucsa.377670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.377670.1	Cucsa.377670.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.377670.1.CDS.1	Cucsa.377670.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..54 score: 9.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 score: 9.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 10..62 score: 8.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 10..66 score: 3.35
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 12..71 score: 3.7
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 12..71 score: 3.7