Cucsa.366860.9 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.366860.9
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA-binding protein, putative
Location	scaffold03625 : 349368 .. 356605 (-)
Sequence length	1573

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGGAGAGAGAGAGGAGATCTGCGTTTAGGGTTTTGTTGAAATCTCAGAAATTTTGATAAAAAGGTTAGTTGAGCGCGTTATCCACGAATATCTACTGTTTTTGTCTGTTTGATTTGTTATTTTGAGCTTTATTCGCAAAGAAGAATTTGAAACAGGGAAAAAGAAATGATAAATTTGGTGAGATTGCTCTGGTATTTAGCTATTGTGTGTGAGAAAGAGATGTGCCTCTTCTTGTTATCATGTGCAGGGAGCGAGTGCGAGAGATTTGGGGAGAGTGAGCGAGCGTGGGTCTTTGAGCGAGCGAGCGAGGGAGCGAGGAAGAAGAGGAGGAGAGAGTGATATACTTTTTCACTTTTAGGGTTCAATTTCTCTGCCTTACCTGCGCCCATTCATCATGGATCGGAAGCTGGTGGTTAGTATTTTCTTTTCCCCTATTCAGCCACGTCTTTGTGATTTTTCAGCCGTTTCTTCTATTAAGTAATCTGGTTTCCCCATTAGGTGTTTTTTTTTTTATTACCGATTTGATTTGCTCTGTTTATTTCTTTTATGAAATTTAGGTTCTTGGCATTCCATGGGACGTCGATACAGAAGGGCTAAGAGAATACATGAGCAAATTTGGGGAGTTGGAGGATTGTATTGTTATGAAGGTTTGCCTTTTCTATTCTTCTCGTGGTACTACATTCGTTTATCCATTGTTTCTATGGTTTTTAAAAAGCACGCTTTTGACTTGAGCCTAGTGTTATTAGAAGTGTGATTGCTCACTCTACAGCAATGGTCCTTTGGGTTGAAGCCCGCCCAAGCCACAAAATAAAAAATTACTTTAAATAATTTTTTTCTATACACGAAAATGAATAGTATTATGGCTATTAAGATAGTGAAATGCTCGAGAATGTATGTGGTGTGGCCTAAGAATGACTAAGCTAAGGAGCGAGTTCTCCAAGAACCAAATCACGAAACTTTATTTTTCATTCGAAGTGTATTTCAATTCATGCGAGGAACCCTTTTTCTGTAGGAGATTAAACGTAAATGAGGGTAAAAAGGATTAACCTCTGGATTTGCCAAAATTACCCTAATCCTACCCCCATCATTCTATCCCTCCCCAAAGAAACTCGTCTTTGATTTTTAAAAAGATGATATGACTCATTTAATGAAGCGCTACAAAACCAACTATCTACATCTTGTACAATTTTTTTTTCATCAGAGAAACACAGCTTAGGTACAAATAGACTTAGCATTGCAAGAATAAATTCATCCAATTCAACAAACCAAAAACCACCTACAGCAGAATCGCTTGGTGAAGAAAACTCAGTAAAAATGTTGGGAAAATTTAATGTGTTTTGGGATGATGGATTGAGTCTTTTGGGTATGGGTTGGGTTATAGGCTAGGAATTGGGACTCGATGGGTTTAGACTTGTAGTGTTACAATTCCCAATTTGCTTGGGGATGGGTACGAGCTTAGGTCGATTGATTATGGGGGCGTTGGGGAGAAACTCTTTGCACCTGAAATTTACTTCGTCATCTCCTCTATTCAACTTTTTGTTCTCAACAAATCACCCTTGATTTCTCTATTGGATAGGGTCATCCAAGCTTTGATTTGGAAAAAATCTTGCTGACCTTATCATCTTCCCTCTAGACATTGTCTAGGGTTCTCACCATTCTTTGAATTGAGTCGCGCATGGTTGCTATCTTCTTCCTCTGCTTGAACATCTTCAAATTCTCCTCCTTTTTTGTTCAATTACTTTACTTAAGTTCTTGTCTACTATTTCAAAACCTCCTCCCATGCTTGTGATTTTGATTTCATGTTGATTCTTGCTACTTTGGTCTTTTTCTCGATTTGGCTTTGATTTCAGTTGCTAAAATTTAATGTTTGACTTTGTGTGGCTTCTACAAGATCAAACCTTCATCCATACATTTGTTTTCTTTTTTTCTTCACTGAAAAATCCATGTGAGTTCTTCCCCAAATTCATTCTCTTGAATGAATTTTTGATTTTGTTGAATTACTTCTGCGTCATACAAAACAATACTCTTCCTTGATTGAATTCTTGTTGTTCTCTGAAAAGTAATTCAAATTTTGAATAATTTTTCTCAGGTTATGCAATATGCTGTATGTTGATCCCTTCTTCCATCATCTCCTCCATTGCGGTAGGGTTGATGTGTAGGAATTGGGTGTGCTTGAATGGGCTTGTTTCTCATTACCAAGATAGTAACTTTTGTCCCTAAACATATTTGTTGTGTTGCAAAGGATGATCTTATGAAGCCCTTCTAATTTAAAGGGTTTCTCCTTGTAATTACGCATTGCTGTTTACAACGAACATAACTCATGATGTTTCCTCTTGTGATCTGCGTTGCCAAAAGTTTTTCGGTCTTCACCAGTGGTAGTCAACATTGGCTAAAGTGATTTCTCTGATACCAAATCGATGTAGCCTAGGAATGACTAAGGATGAAGGAGTAAATTCTCCAAGAATCAAACAGCAATAACCTCATTATCAATCAAAGTGTATTCAATATTGGAGAGGGGTCCTTAATTATAAGAAAATAAACATAAATGAGGTTAAAAAGGATTAACCTACGGATTTACCAAAATTACTCTAATCCTTCTTCCATCAATCGAGCTTTTTAGAGATTGTGGAGATAAATGATTACTCTTAACTCTTATGTATACTTTTTAGTTTCTTCATAAAACATTACCAAAAAGAAAATTTTGGCTTCAATCATTGAAGTGTTCAACCCTAACTTTGTGAGTCTGTGACGCTTCGACTCCAAGTAGAGCCTTATGAAGGGCTCCTCTCTTTTTCTGAAGCCACATGGCCATTGACCTAAGGCGTCTACTTCTAAGAAATTTTCCAAATTATTCATTAGGCCTTGTTCTCTTGAATTTGAACTCTTTTAACGAGCTAGTTCTCTCTCTAGTGGCTCTTGTTGGGCTATGGTTTTTGTGTATGTGTTTTTTAGCTTTTGCAGTTTTGTTTATTTATTGTTAACGCTTACTTAATGAAAGTTGCTCTCTTGATGAAAAATGATATTTATTGGTTTTGTTTTGCTGGGGGATTCTATGCATGAAGATAGTGAATACTTTTTGAGACTAATTTTGTGTCATTACAACTTTTTATTTTCAAGTTCTTTTATCTTATAGCCATATGTTTTTTTAATGTCAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGATATGTGACATTTGCAACCGACGAAGATGCTAAGGTAGGAATATGTTAATCACTTTCTCTTTTGATGGACTTGATGTCTTTTTATGCCTAACATCTCTTTGTTGCAGAATGCACTATCAAGCGAGCACTTTCTTGGCAACAGAATGATGGAAGTCAAAGTTGCCACACCTAAAGTTAGTCTCTTTCTCTCTCTCTCTCTCTTCTCTACTTGTCCGACTCTCTTGTGCACATTTTCCTTATGCAGAGTGGTCTTTGTTTTATCTTCCTGTTTGTTTGTTTGTTTTTTTTTAAAAATAAATATATCATAAGAAGTGCGAGTACTTTGTTTTGATGTGTATGCATACAACTGAATTGGACGTGGACTTCAAATTTTTCTGTTGACAGGAGGAGATGAGAGCACCTCCTAAGAGAGTCACAAGGATTTTTGTTGCAAGGATCTCACAAACTGTGACTGAGGCTGCCTTCCGCAGGTAGTTTGGTGTGATTTTCTGCTATTCCTTCTTTTTCTTTTATTTTTGACCATTCGAAAATGAAAAATGAGGTTGTCACAGTCAGTATATTTGAAGTTGAAACATGTGTTTTGACTTGAAATGCAACCCCTGGAAATGATCTTGATAGCTGTAAATGTTAAATCAACTAACTTGTTCATTTCTGGAACTGAAATGGAAGAATCTTATAGACTAGGGATGAATGGTTAATTTTAAGGGGGATAAATGATAAAATTTCAGGCCCTTTCTTAAGCACATTTCCTTCTTTTTTCAGTCATTCTATACTTGAAGTCTATGAAACATGGATATTTTAGCTATGGTAATATTATTCTATCCATCACTTGTTGAACAGTATCTAGAAAAAATAGTGATATTGGACAAAATAATATATCTTGGGAGTAAAATTGAGCAATATTTTCTATGTAACCTCAGATTTCCTTGCGGATAAAAATTATGTATATTTAGGATAATTTATATTCTAATTACTGTGTTCTTCGTAATGTTGTGTCTGTGTTCTACTCTTTTCTTAGGAGAGAAACAAGTTTCATTTTATGGTTTTTTAATATTTTCTTGCAGTCATTTTGAGAAATATGGAGAGATAACAGATCTTTACATGCCAAAGGTACGGTTCCTTTTCACTAAAGTGGGAAAATAGTTCTGTGGTTGTACTACCAAGTTACCAACTGTCTTGTGCTAGAGTAAATTAGGAAGGGATATTTTATTCACTTTCACTTATCAGGAGTTCATGTACTAAGCAAATTGGGAAATATTATTTTGATTTGATGACTGCATATGGAACACCCATGCTTATGTGCACAATCTATAAAGTATTACTGACATTATTTAACGTTTACTTGATTAATTATTCAGGACCAGGGATCAAAAACCCATCGCGGAATAGGTTTCATCACTTTTGCAAGTTCAGGTTGGATTATGTTTGTATATTGATATATGATTGTAGAGTTCAAGTTGCCAATTTTAGTCTTACTGGTAAGTGGTAAGACAAGTCAACCTCCTTGTAGTGTGTCTTGACTTTTTTCTTGAACTTAAAGTTTAGAAAAAAAGAAAAAAAATTGGTAACCATCATGGGTTGATCTAATTGGTAAATAAGGGAACATCCCTTTGATAAAGGGCTAAGAGGTCATGGGTTGGTGGCCACCTACTTAGGATTTAATATTTTAGGAGGTTTTCTGACACCCAAATGTTGTAGGGTCAAGCGAGTTGTCCCATAAGCTGACCCAAATACTCACATACGGAGGAAGTTTCTTTTACATCAATGATTTTGTCCTACTCCTATTAAGCACAAAGCACTGAAGTTTGAATAATGTGTGTACTGCTAGTGTCCAACAGATGTTGGACACTCCAAACTTGGATATATGTTAGTTTAATTCACATGTATGGGACATTAGTTATCCTTGGTACAAATGGACTACGAGTTGGTGAAATTTGATTGGCATGCATTGAACATTTGTTAATCATAATAAATAGACGAGAAGTAACTTATGTCATTAACAATAAATTTTGAGGTGAAATTGCATAGTAAATGCTTAATCTAAATCTTAATAACTTTTATATATTCTTTTAAGACAGTAAATTGAAACAAGTGTACTATTAAATTTTAAAATAAAATGTAACATCATGTTTGTTTTAGGCTGGATTTTTCTTTTCTTTTCTTTTCTTTTTTCAGGGGATTTTCTATGAAACATTGAGTTAGAGAGTATAAGCAGCTGAGTTTTAGTGAATTGAGAGTGCTTGGGATAAAGTTTGGGATGTACCCACCTCAATGGTTCATAATCATTGGTTCTTTGCTAAAACTGTTGCTCATAATGTTTGTCATCTGGTAGCTACTCTAAATAGTTCTTTTGTGTCATTGTGACTAAATTAAAATTTTTGTTTTTGATTTTTATCTCTTTTTGGTTGTACTTTCTTCATGCTTCATGAGGAAAGCTCTCTAGGGTTTTTGCCCCTTTTAGTGTACCTTTTGCTTGATATTGCCTCCTTTTTCTTTAATTTTTTTTCTTGACAATCTGCATTGTTTTCACATTGACAAAAAGTTTCACTCTTATCTTGCAGATTCTGTGGAAAATTTGATGGCTGATACTCATGAATTAGGAGGTTCTAATGTGGTTGTTGATAGAGCAACCCCCAAGGCAAGAATTGAACACCATGTTTACCTTCTGGATATTTTTCAATCAGTATTGAATATGTACGTCTAATTAAAGGTTTCTATATTATATTTCCAGGATGATGATTTCAGGCCCATAGGGAAAATGCCGCAGGGGGGTGGTGGGGGTGGGGGTGGATATGGTGCATACAATGCTTATATTTCTGCCGCAACAAGATATGCAGCTCTTGGTGCTCCTACCTTATATGACCACCCAGGCTCAGTTTATGGGAGTATGTCCCCGACAGTACCCTTGTTTCATGTGATGCTTGGTTTGGGTAAACATTGTTATGATGATTTACCTTGTCATTGGATCAGGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTGTTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAGTACTTTGGTAGATTTGGTCGTATATTGGATGTCTATGTTCCAAAGGTAAAAACTAGATTTAGTTAATACTGACTTCGTGAGACCCACTGATTAGAGATATAAGCCTAAAGATGCAGTTGTTACTGATTAATATAGGATCCTAAAAGATCTGGCCATCGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCATGAAATTTGTGGACAACAGGTATGTGTGCATGTGACTTTGCTTACTAGAAGGAAGCACAATGGTCTGTTTGAACGTTGGTAGAATATGTAGAATAGAGTTTTTATTTTTATAACCAAATTTATATATACATGCTTGTAGACATGGACATGAAACACTGGAATTCCATACATATACTACAAACACCCACACACTTTCTAAAGTGCAATTACATGCTCATTTTAAGTTCGTTACGCTCTCTCAGTGGTGGGTTGGTTGATTCTTTTTACTTCAATCATGTATATAGTCTCACCGTTGGATTCTGCAGGTTGCTATTGATTCAGCCACACCTCTTGATGATGCTGGAGCTGGAGCTGGAGCATCTGGAGCCAGTGGAACTTTTATGATGAATAGTGCTGCCGATTCTTTTGGCGGCTATGTGGGGCCTATGAGGACTTATGGAAGGATGTATGGAAGCCTGGACTTCGATGATGTAAGTGCTTCTGTTTGGCTTCCTATTTGAATTATATTTAAGTTGCCTAAAATTTAGGTGGTGGTTGGTAGGTTGTCCACCACATTAAGTGATATTTACATTTACTCGTAAATCCATTTTTCTCAAAAAGTAAAAAATACTTTCACCCTGTTGAGATTAATTTGGTACATTATCAATACGTTACCTTAATTATGTATCATGAGATGGACTATTCAGTTTAAAATCTTTAGAAGAAACTCAATAATATAGTTCACCTATCTAAGATTTAAAGTCTTACGAGTTTTTTAACACTCAAATGTTGTATGGT

mRNA sequence

AGAGGGAGAGAGAGAGGAGATCTGCGTTTAGGGTTTTGTTGAAATCTCAGAAATTTTGATAAAAAGGGAGCGAGTGCGAGAGATTTGGGGAGAGTGAGCGAGCGTGGGTCTTTGAGCGAGCGAGCGAGGGAGCGAGGAAGAAGAGGAGGAGAGAGTGATATACTTTTTCACTTTTAGGGTTCAATTTCTCTGCCTTACCTGCGCCCATTCATCATGGATCGGAAGCTGGTGGTTCTTGGCATTCCATGGGACGTCGATACAGAAGGGCTAAGAGAATACATGAGCAAATTTGGGGAGTTGGAGGATTGTATTGTTATGAAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGATATGTGACATTTGCAACCGACGAAGATGCTAAGAATGCACTATCAAGCGAGCACTTTCTTGGCAACAGAATGATGGAAGTCAAAGTTGCCACACCTAAAGAGGAGATGAGAGCACCTCCTAAGAGAGTCACAAGGATTTTTGTTGCAAGGATCTCACAAACTGTGACTGAGGCTGCCTTCCGCAGTCATTTTGAGAAATATGGAGAGATAACAGATCTTTACATGCCAAAGGACCAGGGATCAAAAACCCATCGCGGAATAGGTTTCATCACTTTTGCAAGTTCAGATTCTGTGGAAAATTTGATGGCTGATACTCATGAATTAGGAGGTTCTAATGTGGTTGTTGATAGAGCAACCCCCAAGGATGATGATTTCAGGCCCATAGGGAAAATGCCGCAGGGGGGTGGTGGGGGTGGGGGTGGATATGGTGCATACAATGCTTATATTTCTGCCGCAACAAGATATGCAGCTCTTGGTGCTCCTACCTTATATGACCACCCAGGCTCAGTTTATGGGAGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTGTTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAGTACTTTGGTAGATTTGGTCGTATATTGGATGTCTATGTTCCAAAGGATCCTAAAAGATCTGGCCATCGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCATGAAATTTGTGGACAACAGGTTGCTATTGATTCAGCCACACCTCTTGATGATGCTGGAGCTGGAGCTGGAGCATCTGGAGCCAGTGGAACTTTTATGATGAATAGTGCTGCCGATTCTTTTGGCGGCTATGTGGGGCCTATGAGGACTTATGGAAGGATGTATGGAAGCCTGGACTTCGATGATGTAAGTGCTTCTGTTTGGCTTCCTATTTGAATTATATTTAAGTTGCCTAAAATTTAGGTGGTGGTTGGTAGGTTGTCCACCACATTAAGTGATATTTACATTTACTCGTAAATCCATTTTTCTCAAAAAGTAAAAAATACTTTCACCCTGTTGAGATTAATTTGGTACATTATCAATACGTTACCTTAATTATGTATCATGAGATGGACTATTCAGTTTAAAATCTTTAGAAGAAACTCAATAATATAGTTcacctatctaagatttaaagtcttacgagttttttaacactcaaatgttgtatggt

Coding sequence (CDS)

ATGGATCGGAAGCTGGTGGTTCTTGGCATTCCATGGGACGTCGATACAGAAGGGCTAAGAGAATACATGAGCAAATTTGGGGAGTTGGAGGATTGTATTGTTATGAAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGATATGTGACATTTGCAACCGACGAAGATGCTAAGAATGCACTATCAAGCGAGCACTTTCTTGGCAACAGAATGATGGAAGTCAAAGTTGCCACACCTAAAGAGGAGATGAGAGCACCTCCTAAGAGAGTCACAAGGATTTTTGTTGCAAGGATCTCACAAACTGTGACTGAGGCTGCCTTCCGCAGTCATTTTGAGAAATATGGAGAGATAACAGATCTTTACATGCCAAAGGACCAGGGATCAAAAACCCATCGCGGAATAGGTTTCATCACTTTTGCAAGTTCAGATTCTGTGGAAAATTTGATGGCTGATACTCATGAATTAGGAGGTTCTAATGTGGTTGTTGATAGAGCAACCCCCAAGGATGATGATTTCAGGCCCATAGGGAAAATGCCGCAGGGGGGTGGTGGGGGTGGGGGTGGATATGGTGCATACAATGCTTATATTTCTGCCGCAACAAGATATGCAGCTCTTGGTGCTCCTACCTTATATGACCACCCAGGCTCAGTTTATGGGAGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTGTTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAGTACTTTGGTAGATTTGGTCGTATATTGGATGTCTATGTTCCAAAGGATCCTAAAAGATCTGGCCATCGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCATGAAATTTGTGGACAACAGGTTGCTATTGATTCAGCCACACCTCTTGATGATGCTGGAGCTGGAGCTGGAGCATCTGGAGCCAGTGGAACTTTTATGATGAATAGTGCTGCCGATTCTTTTGGCGGCTATGTGGGGCCTATGAGGACTTATGGAAGGATGTATGGAAGCCTGGACTTCGATGATGTAAGTGCTTCTGTTTGGCTTCCTATTTGA

Protein sequence

MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDDVSASVWLPI*

Homology

[Close]

BLAST of Cucsa.366860.9 vs. Swiss-Prot
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.8e-31
Identity = 76/206 (36.89%), Postives = 113/206 (54.85%), Query Frame = 1


Query: 4   KLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSS 63
           KL V GI W+ D + LRE+ + +GE+   IVM+++ TGR RGFG+V F+        L  
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 64  EHFLGNRMMEVKVATPKEEMRAPPK----------------RVTRIFVARISQTVTEAAF 123
           +H +  R ++VK A  +EE +   +                +  +IFV  +  T+T+  F
Sbjct: 67  KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126

Query: 124 RSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMADT-HELGGSNVVVDRAT 183
           R +FE YG +TD+ +  DQ +   RG GF++F S D+V++++  T H+L G  V V RA 
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRAL 186

Query: 184 PKDDDFRPIGKMPQGGGGGGGGYGAY 193
           PKD +  P G     GGGG GGY  Y
Sbjct: 187 PKDAN--PGGGGRSMGGGGSGGYQGY 210

HSP 2 Score: 92.4 bits (228), Expect = 1.1e-17
Identity = 71/254 (27.95%), Postives = 109/254 (42.91%), Query Frame = 1


Query: 92  RIFVARISQTVTEAAFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMAD 151
           ++FV  IS    E   R HF  YGE++   + +D+ +   RG GF+ F+    ++ ++ +
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 152 THELGGSNVVVDRATPKDDDFRPIGKMPQGGGGGGGGYGAYNAYISAATRYAALGAPTLY 211
            H +          T + D  R + +  Q   G  G                     T  
Sbjct: 67  KHSI---------DTREVDVKRAMSREEQQVSGRTGNLN------------------TSR 126

Query: 212 DHPGSVYGRREFRGMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGF 271
              G  Y +       KKIFVG LP   + ++ RQYF  +G + DV +  D   +  RGF
Sbjct: 127 SSGGDAYNKT------KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGF 186

Query: 272 GFVTF-AEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAGAGASGASGTFMMNSAADSF 331
           GFV+F +ED V   + +  H++ G+QV +  A P D    G G S   G       +  +
Sbjct: 187 GFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGG------GSGGY 221

Query: 332 GGYVGPMRTY-GRM 344
            GY G   +Y GRM
Sbjct: 247 QGYGGNESSYDGRM 221

HSP 3 Score: 56.6 bits (135), Expect = 6.5e-07
Identity = 58/221 (26.24%), Postives = 88/221 (39.82%), Query Frame = 1


Query: 3   RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNAL- 62
           +K+ V G+P  +  E  R+Y   +G + D  +M +++T R RGFG+V+F +++   + L 
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169

Query: 63  SSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLY 122
            + H L  + +EVK A PK+   A P    R      S           ++ YG     Y
Sbjct: 170 KTFHDLSGKQVEVKRALPKD---ANPGGGGRSMGGGGS---------GGYQGYGGNESSY 229

Query: 123 MPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQG 182
             +   ++         F    SV N +      G                        G
Sbjct: 230 DGRMDSNR---------FLQHQSVGNGLPSYGSSGYG-------------------AGYG 289

Query: 183 GGGGGGGYGAYNAYISAATRYAALGAPTLY---DHPGSVYG 220
            G  G GYGAY  Y  +A  Y A GA   Y   + PG+ YG
Sbjct: 290 NGSNGAGYGAYGGYTGSAGGYGA-GATAGYGATNIPGAGYG 289

[Close]

BLAST of Cucsa.366860.9 vs. Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.7e-28
Identity = 86/238 (36.13%), Postives = 120/238 (50.42%), Query Frame = 1


Query: 4   KLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALS- 63
           K+ + G+ W    EGLREY  +FGE+++C+VM++  T RSRGFG+VTF         L+ 
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80

Query: 64  SEHFLGNRMMEVKVATPKEEMRAPPKRVTR---IFVARISQTVTEAAFRSHFEKYGEITD 123
           S H L ++ ++ KVA P+   RA PK VTR   IFV  +S   T    + +FE++G++ D
Sbjct: 81  SRHELDSKTIDPKVAFPR---RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 140

Query: 124 LYMPKDQGSKTHRGIGFITFASSDSVENLM-ADTHELGGSNVVVDRATPKDDDFRPIGK- 183
             +  D+ +  HRG GF+TF S D VE +     HE+    V   +A PK +   P G  
Sbjct: 141 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK-EVMSPTGSA 200

Query: 184 ------MPQGG-----GGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFR 225
                 MP G      G G  GY  + A   A+  Y  L        PG  Y   EFR
Sbjct: 201 RGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLA-------PGYTYQFPEFR 247

HSP 2 Score: 63.5 bits (153), Expect = 5.3e-09
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1


Query: 228 KKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSR 287
           KKIFVG L    + +D++QYF +FG++ D  +  D   + HRGFGFVTF  + + ++V  
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168

Query: 288 -RSHEICGQQVAIDSATPLDDAGAGAGASGAS 319
              HEI  + V    A P +       A G S
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200

HSP 3 Score: 57.8 bits (138), Expect = 2.9e-07
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 229 KIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRR 288
           K+F+G L  + + + LR+YFG+FG + +  V +DP     RGFGFVTF +    D+V  +
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80

Query: 289 S-HEICGQQVAIDSATP 305
           S HE+  + +    A P
Sbjct: 81  SRHELDSKTIDPKVAFP 97

[Close]

BLAST of Cucsa.366860.9 vs. Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-27
Identity = 86/238 (36.13%), Postives = 120/238 (50.42%), Query Frame = 1


Query: 4   KLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALS- 63
           K+ + G+ W    EGLREY  +FGE+++C+VM++  T RSRGFG+VTF         L+ 
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80

Query: 64  SEHFLGNRMMEVKVATPKEEMRAPPKRVTR---IFVARISQTVTEAAFRSHFEKYGEITD 123
           S H L ++ ++ KVA P+   RA PK VTR   IFV  +S   T    + +FE++G++ D
Sbjct: 81  SRHELDSKTIDPKVAFPR---RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 140

Query: 124 LYMPKDQGSKTHRGIGFITFASSDSVENLM-ADTHELGGSNVVVDRATPKDDDFRPIGK- 183
             +  D+ +  HRG GF+TF S D VE +     HE+    V   +A PK +   P G  
Sbjct: 141 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK-EVMSPTGSA 200

Query: 184 ------MPQGG-----GGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFR 225
                 MP G      G G  GY  + A   A+  Y  L        PG  Y   EFR
Sbjct: 201 RGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLA-------PGYTYQFPEFR 247

HSP 2 Score: 57.8 bits (138), Expect = 2.9e-07
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 229 KIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRR 288
           K+F+G L  + + + LR+YFG+FG + +  V +DP     RGFGFVTF +    D+V  +
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80

Query: 289 S-HEICGQQVAIDSATP 305
           S HE+  + +    A P
Sbjct: 81  SRHELDSKTIDPKVAFP 97

[Close]

BLAST of Cucsa.366860.9 vs. Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-27
Identity = 86/238 (36.13%), Postives = 120/238 (50.42%), Query Frame = 1


Query: 4   KLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALS- 63
           K+ + G+ W    EGLREY  +FGE+++C+VM++  T RSRGFG+VTF         L+ 
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80

Query: 64  SEHFLGNRMMEVKVATPKEEMRAPPKRVTR---IFVARISQTVTEAAFRSHFEKYGEITD 123
           S H L ++ ++ KVA P+   RA PK VTR   IFV  +S   T    + +FE++G++ D
Sbjct: 81  SRHELDSKTIDPKVAFPR---RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 140

Query: 124 LYMPKDQGSKTHRGIGFITFASSDSVENLM-ADTHELGGSNVVVDRATPKDDDFRPIGK- 183
             +  D+ +  HRG GF+TF S D VE +     HE+    V   +A PK +   P G  
Sbjct: 141 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK-EVMSPTGSA 200

Query: 184 ------MPQGG-----GGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFR 225
                 MP G      G G  GY  + A   A+  Y  L        PG  Y   EFR
Sbjct: 201 RGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLA-------PGYTYQFPEFR 247

HSP 2 Score: 57.8 bits (138), Expect = 2.9e-07
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 229 KIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRR 288
           K+F+G L  + + + LR+YFG+FG + +  V +DP     RGFGFVTF +    D+V  +
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80

Query: 289 S-HEICGQQVAIDSATP 305
           S HE+  + +    A P
Sbjct: 81  SRHELDSKTIDPKVAFP 97

[Close]

BLAST of Cucsa.366860.9 vs. Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 3.6e-26
Identity = 71/198 (35.86%), Postives = 112/198 (56.57%), Query Frame = 1


Query: 3   RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALS 62
           RKL + G+ ++   E LR +  ++G L DC+VM++ +T RSRGFG+VT+AT E+   A++
Sbjct: 14  RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

Query: 63  SE-HFLGNRMMEVKVATPKEEMRAPPKRVT--RIFVARISQTVTEAAFRSHFEKYGEITD 122
           +  H +  R++E K A  +E+ + P   +T  +IFV  I +   E   R +FE+YG+I  
Sbjct: 74  ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133

Query: 123 LYMPKDQGSKTHRGIGFITFASSDSVENLMADT-HELGGSNVVVDRATPKDD----DFRP 182
           + +  D+GS   RG  F+TF   DSV+ ++    H + G N  V +A  K +        
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQ 193

Query: 183 IGKMPQG--GGGGGGGYG 191
            G+   G  GGG GGG+G
Sbjct: 194 RGRSGSGNFGGGRGGGFG 211

HSP 2 Score: 67.8 bits (164), Expect = 2.8e-10
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 80  KEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITF 139
           K E    P+++ ++F+  +S   T+ + RSHFE++G +TD  + +D  +K  RG GF+T+
Sbjct: 3   KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62

Query: 140 ASSDSVENLM-ADTHELGGSNVVVDRATPKDDDFRP 175
           A+ + V+  M A  H++ G  V   RA  ++D  RP
Sbjct: 63  ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 98

HSP 3 Score: 50.8 bits (120), Expect = 3.5e-05
Identity = 37/116 (31.90%), Postives = 56/116 (48.28%), Query Frame = 1


Query: 228 KKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAE-DGVADRVS 287
           KKIFVG + ++     LR YF ++G+I  + +  D      RGF FVTF + D V   V 
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164

Query: 288 RRSHEICG-----------QQVAIDSATPLDDAGAGAGASGASGTFMMNSAADSFG 332
           ++ H + G           Q++A  S++    +G+G    G  G F  N   D+FG
Sbjct: 165 QKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGN---DNFG 217

[Close]

BLAST of Cucsa.366860.9 vs. TrEMBL
Match: A0A0A0LMN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285910 PE=4 SV=1)

HSP 1 Score: 714.5 bits (1843), Expect = 6.4e-203
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 1


Query: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120
           LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL
Sbjct: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ 180
           YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ
Sbjct: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ 180

Query: 181 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS 240
           GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS
Sbjct: 181 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS 240

Query: 241 ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID 300
           ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID
Sbjct: 241 ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID 300

Query: 301 SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 352
           SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD
Sbjct: 301 SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 351

[Close]

BLAST of Cucsa.366860.9 vs. TrEMBL
Match: W9QU11_9ROSA (Uncharacterized RNA-binding protein OS=Morus notabilis GN=L484_011062 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 7.6e-164
Identity = 289/354 (81.64%), Postives = 320/354 (90.40%), Query Frame = 1


Query: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWDVDT+GLR+YM+KFGELEDCIVMKERSTGRSRGFGYVTFA++EDAKNA
Sbjct: 1   MERKLVVLGIPWDVDTDGLRDYMTKFGELEDCIVMKERSTGRSRGFGYVTFASEEDAKNA 60

Query: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120
           LS EHFL NRM+EVKVATPKEEMRAP K+VTRIFVARI Q+V +A F+SHFEKYGEITDL
Sbjct: 61  LSGEHFLRNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVAKATFQSHFEKYGEITDL 120

Query: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ 180
           YMPKDQGS THRGIGFITFA+++SV+NLMA+THELGGS VVVDRATPK+DDFRPIG+M Q
Sbjct: 121 YMPKDQGSTTHRGIGFITFANAESVDNLMAETHELGGSTVVVDRATPKEDDFRPIGRMAQ 180

Query: 181 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGR---REFRGMGKKIFVGRLPQ 240
                 GGYGAYNAYISAATRYAALGAPTLYDHPG++YG       RG+GKKIFVGRLPQ
Sbjct: 181 ------GGYGAYNAYISAATRYAALGAPTLYDHPGTMYGNGRGESTRGLGKKIFVGRLPQ 240

Query: 241 EASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQV 300
           EA+ +DLRQYFGRFGRILDVY+P+DPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQV
Sbjct: 241 EATIEDLRQYFGRFGRILDVYIPRDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQV 300

Query: 301 AIDSATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 352
           AID+ATP+DDA       G SG F++NS A++FGGY GPMRTYGRMYGSLDFDD
Sbjct: 301 AIDTATPVDDA-------GTSGNFVVNS-AEAFGGYGGPMRTYGRMYGSLDFDD 340

[Close]

BLAST of Cucsa.366860.9 vs. TrEMBL
Match: A0A0B2SCU6_GLYSO (Heterogeneous nuclear ribonucleoprotein 27C OS=Glycine soja GN=glysoja_003822 PE=4 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 4.2e-162
Identity = 290/359 (80.78%), Postives = 313/359 (87.19%), Query Frame = 1


Query: 3   RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALS 62
           RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFA+ +DAK  LS
Sbjct: 4   RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63

Query: 63  SEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLYM 122
           SEH +GNR +EVKVATPKEEMRAP K+VTRIFVARI Q+VTEA FRSHFEKYGEITDLYM
Sbjct: 64  SEHIIGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYM 123

Query: 123 PKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKM--PQ 182
           PKDQGSK HRGIGFITFAS+DSVENLM++THELGGS VVVDRATPKDDDF+P+G+M  P 
Sbjct: 124 PKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDDDFKPMGRMPPPP 183

Query: 183 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS 242
                GGGYGAYNAYISAATRYAALGAPTLYDHPG +YGR + R   KKIFVGRLP EA+
Sbjct: 184 PPPPQGGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGDARRTSKKIFVGRLPPEAT 243

Query: 243 ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID 302
           +DDLRQYFGRFGRILDVYVP+DPKR+GHRGFGFVTFAEDG ADRVSRRSHEICG  VAID
Sbjct: 244 SDDLRQYFGRFGRILDVYVPRDPKRAGHRGFGFVTFAEDGAADRVSRRSHEICGHPVAID 303

Query: 303 SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDDVSASVWLP 360
           SATP+DDA       G SG FMMNS  +SFGGY GP+R+YGRMYGSLDFDD    +  P
Sbjct: 304 SATPVDDA-------GPSGNFMMNS-MESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRP 354

[Close]

BLAST of Cucsa.366860.9 vs. TrEMBL
Match: K7LN75_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G055500 PE=4 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 4.2e-162
Identity = 290/359 (80.78%), Postives = 313/359 (87.19%), Query Frame = 1


Query: 3   RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALS 62
           RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFA+ +DAK  LS
Sbjct: 4   RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63

Query: 63  SEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLYM 122
           SEH +GNR +EVKVATPKEEMRAP K+VTRIFVARI Q+VTEA FRSHFEKYGEITDLYM
Sbjct: 64  SEHIIGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYM 123

Query: 123 PKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKM--PQ 182
           PKDQGSK HRGIGFITFAS+DSVENLM++THELGGS VVVDRATPKDDDF+P+G+M  P 
Sbjct: 124 PKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDDDFKPMGRMPPPP 183

Query: 183 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS 242
                GGGYGAYNAYISAATRYAALGAPTLYDHPG +YGR + R   KKIFVGRLP EA+
Sbjct: 184 PPPPQGGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGDARRTSKKIFVGRLPPEAT 243

Query: 243 ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID 302
           +DDLRQYFGRFGRILDVYVP+DPKR+GHRGFGFVTFAEDG ADRVSRRSHEICG  VAID
Sbjct: 244 SDDLRQYFGRFGRILDVYVPRDPKRAGHRGFGFVTFAEDGAADRVSRRSHEICGHPVAID 303

Query: 303 SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDDVSASVWLP 360
           SATP+DDA       G SG FMMNS  +SFGGY GP+R+YGRMYGSLDFDD    +  P
Sbjct: 304 SATPVDDA-------GPSGNFMMNS-MESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRP 354

[Close]

BLAST of Cucsa.366860.9 vs. TrEMBL
Match: V4SF15_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025943mg PE=4 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 4.2e-162
Identity = 289/352 (82.10%), Postives = 317/352 (90.06%), Query Frame = 1


Query: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M++KLVVLGIPWDVDT+GLREYMSKFG+LEDCIVMKERSTGRSRGFGYVTFA+ EDAK A
Sbjct: 1   MEKKLVVLGIPWDVDTDGLREYMSKFGDLEDCIVMKERSTGRSRGFGYVTFASAEDAKTA 60

Query: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120
           LS+EHFLG+RM+EVK+ATPKEEMRAPP++V+RIFVARI+ +V EA FRSHFEKYGEITDL
Sbjct: 61  LSAEHFLGSRMLEVKIATPKEEMRAPPRKVSRIFVARIAPSVNEAMFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ 180
           YMPKDQGSK HRGIGFITFAS+DSVENLM DTHELGGS VVVDRATPK+DDFRP+G+M  
Sbjct: 121 YMPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSH 180

Query: 181 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRRE-FRGMGKKIFVGRLPQEA 240
                 GGYGAYNAYISAATRYAALGAPTLYDHPGS YGR E  + +GKKIFVGRLPQEA
Sbjct: 181 ------GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA 240

Query: 241 SADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAI 300
           +A+DLR+YF RFGRILDVYVPKDPKR+GHRGFGFVTFAE+ VADRVSRRSHEICGQQVAI
Sbjct: 241 TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAI 300

Query: 301 DSATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 352
           DSATPLDDA       G S  FMMN AA++FGGY GPMRTYGRMYG+LDFDD
Sbjct: 301 DSATPLDDA-------GPSQNFMMN-AAETFGGYGGPMRTYGRMYGNLDFDD 338

[Close]

BLAST of Cucsa.366860.9 vs. TAIR10
Match: AT4G36960.1 (AT4G36960.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 533.9 bits (1374), Expect = 7.8e-152
Identity = 264/363 (72.73%), Postives = 304/363 (83.75%), Query Frame = 1


Query: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWD+D++GL++YMSKFG+LEDCIVMK+RSTGRSRGFGYVTFA+ EDAKNA
Sbjct: 1   MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60

Query: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120
           L  EHFLGNR++EVKVATPKEEMR P K+VTRIFVARI  +V+E+ FRSHFE+YGEITDL
Sbjct: 61  LKGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120

Query: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDF----RPIG 180
           YMPKD  SK HRGIGFITF+S+DSVE+LM DTH+LGG+ V VDRATPK+DD      P+ 
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVA 180

Query: 181 KMPQ------GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRRE--FRGMGK 240
           +M +      GG G  GGYGAY+AYISAATRYAALGAPTLYD+P + YGR E   RG+G 
Sbjct: 181 RMSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGN 240

Query: 241 KIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRR 300
           KIFVGRLPQEAS DDLR YFGRFG I D Y+PKDPKRSGHRGFGFVTFAE+GVADRV+RR
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300

Query: 301 SHEICGQQVAIDSATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLD 352
           SHEICGQ+VAIDSATPLD+AG  AGAS    + + +S  + FGGY GPMR +GRMYG + 
Sbjct: 301 SHEICGQEVAIDSATPLDEAGPSAGAS----SMLSSSRPEYFGGYGGPMRAFGRMYGGMS 359

[Close]

BLAST of Cucsa.366860.9 vs. TAIR10
Match: AT4G14300.1 (AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-32
Identity = 76/206 (36.89%), Postives = 113/206 (54.85%), Query Frame = 1


Query: 4   KLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSS 63
           KL V GI W+ D + LRE+ + +GE+   IVM+++ TGR RGFG+V F+        L  
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 64  EHFLGNRMMEVKVATPKEEMRAPPK----------------RVTRIFVARISQTVTEAAF 123
           +H +  R ++VK A  +EE +   +                +  +IFV  +  T+T+  F
Sbjct: 67  KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEF 126

Query: 124 RSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMADT-HELGGSNVVVDRAT 183
           R +FE YG +TD+ +  DQ +   RG GF++F S D+V++++  T H+L G  V V RA 
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRAL 186

Query: 184 PKDDDFRPIGKMPQGGGGGGGGYGAY 193
           PKD +  P G     GGGG GGY  Y
Sbjct: 187 PKDAN--PGGGGRSMGGGGSGGYQGY 210

HSP 2 Score: 92.4 bits (228), Expect = 6.0e-19
Identity = 71/254 (27.95%), Postives = 109/254 (42.91%), Query Frame = 1


Query: 92  RIFVARISQTVTEAAFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMAD 151
           ++FV  IS    E   R HF  YGE++   + +D+ +   RG GF+ F+    ++ ++ +
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 152 THELGGSNVVVDRATPKDDDFRPIGKMPQGGGGGGGGYGAYNAYISAATRYAALGAPTLY 211
            H +          T + D  R + +  Q   G  G                     T  
Sbjct: 67  KHSI---------DTREVDVKRAMSREEQQVSGRTGNLN------------------TSR 126

Query: 212 DHPGSVYGRREFRGMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGF 271
              G  Y +       KKIFVG LP   + ++ RQYF  +G + DV +  D   +  RGF
Sbjct: 127 SSGGDAYNKT------KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGF 186

Query: 272 GFVTF-AEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAGAGASGASGTFMMNSAADSF 331
           GFV+F +ED V   + +  H++ G+QV +  A P D    G G S   G       +  +
Sbjct: 187 GFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGG------GSGGY 221

Query: 332 GGYVGPMRTY-GRM 344
            GY G   +Y GRM
Sbjct: 247 QGYGGNESSYDGRM 221

HSP 3 Score: 56.6 bits (135), Expect = 3.6e-08
Identity = 58/221 (26.24%), Postives = 88/221 (39.82%), Query Frame = 1


Query: 3   RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNAL- 62
           +K+ V G+P  +  E  R+Y   +G + D  +M +++T R RGFG+V+F +++   + L 
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169

Query: 63  SSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLY 122
            + H L  + +EVK A PK+   A P    R      S           ++ YG     Y
Sbjct: 170 KTFHDLSGKQVEVKRALPKD---ANPGGGGRSMGGGGS---------GGYQGYGGNESSY 229

Query: 123 MPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQG 182
             +   ++         F    SV N +      G                        G
Sbjct: 230 DGRMDSNR---------FLQHQSVGNGLPSYGSSGYG-------------------AGYG 289

Query: 183 GGGGGGGYGAYNAYISAATRYAALGAPTLY---DHPGSVYG 220
            G  G GYGAY  Y  +A  Y A GA   Y   + PG+ YG
Sbjct: 290 NGSNGAGYGAYGGYTGSAGGYGA-GATAGYGATNIPGAGYG 289

[Close]

BLAST of Cucsa.366860.9 vs. TAIR10
Match: AT3G07810.2 (AT3G07810.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 136.0 bits (341), Expect = 4.7e-32
Identity = 72/195 (36.92%), Postives = 114/195 (58.46%), Query Frame = 1


Query: 4   KLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSS 63
           KL + GI WD + E L+EY S FGE+ + +++K+R+TGR+RGFG+V FA    A+  ++ 
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66

Query: 64  EHFLGNRMMEVKVATPKEEMR--------------APPKRVTRIFVARISQTVTEAAFRS 123
           +H +  R++E K A P+++                  P R  +IFV  +  +VTE+ F++
Sbjct: 67  KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126

Query: 124 HFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMADT-HELGGSNVVVDRATPK 183
           +FE++G  TD+ +  D  ++  RG GFIT+ S ++VE ++  T HEL G  V V RA PK
Sbjct: 127 YFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186

HSP 2 Score: 62.4 bits (150), Expect = 6.6e-10
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 1


Query: 229 KIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRR 288
           K+F+G +  + + + L++YF  FG +++  + KD      RGFGFV FA+  VA+ V   
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66

Query: 289 SHEICGQQVAIDSATPLDD 308
            H I G+ V    A P DD
Sbjct: 67  KHNIDGRLVEAKKAVPRDD 85

[Close]

BLAST of Cucsa.366860.9 vs. TAIR10
Match: AT4G26650.1 (AT4G26650.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-31
Identity = 72/205 (35.12%), Postives = 114/205 (55.61%), Query Frame = 1


Query: 4   KLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSS 63
           KL + GI WD D E L+EY  K+G+L + ++M++R+TGR+RGFG++ FA    A+  +  
Sbjct: 16  KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75

Query: 64  EHFLGNRMMEVKVATPKEEMR-----APP--------------KRVTRIFVARISQTVTE 123
           +H +  R +E K A P+++ +     A P               R  +IFV  +  ++TE
Sbjct: 76  KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITE 135

Query: 124 AAFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMADT-HELGGSNVVVD 183
           A F+++F+++G I D+ +  D  ++  RG GFITF S +SV+ ++  T HEL G  V V 
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195

Query: 184 RATPKDDDFRPIGKMPQGGGGGGGG 189
           RA PK+       + P  G G   G
Sbjct: 196 RAVPKELSSTTPNRSPLIGYGNNYG 220

HSP 2 Score: 98.2 bits (243), Expect = 1.1e-20
Identity = 65/227 (28.63%), Postives = 99/227 (43.61%), Query Frame = 1


Query: 79  PKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLYMPKDQGSKTHRGIGFIT 138
           P+E+       + ++F+  IS    E   + +F KYG++ +  + +D+ +   RG GFI 
Sbjct: 3   PEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIV 62

Query: 139 FASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQGGGGGGGGYGAYNAYISA 198
           FA     E ++ D H + G  V   +A P+DD                            
Sbjct: 63  FADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQ-------------------------QV 122

Query: 199 ATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEASADDLRQYFGRFGRILDVY 258
             R+A+        H G+  G R      KKIFVG LP   +  + + YF +FG I DV 
Sbjct: 123 LKRHASPMHLISPSHGGNGGGART-----KKIFVGGLPSSITEAEFKNYFDQFGTIADVV 182

Query: 259 VPKDPKRSGHRGFGFVTFAEDGVADRVSRRS-HEICGQQVAIDSATP 305
           V  D      RGFGF+TF  +   D V  ++ HE+ G+ V +  A P
Sbjct: 183 VMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVP 199

[Close]

BLAST of Cucsa.366860.9 vs. TAIR10
Match: AT2G33410.1 (AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-31
Identity = 78/209 (37.32%), Postives = 110/209 (52.63%), Query Frame = 1


Query: 4   KLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALSS 63
           KL + GI WD D   LREY S FGE+    VM+E++TGR RGFG+V F+        L  
Sbjct: 7   KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66

Query: 64  EHFLGNRMMEVKVATPKEEMRAPPK----------------RVTRIFVARISQTVTEAAF 123
           +H + NR ++VK A  +EE     +                R  +IFV  +   +T   F
Sbjct: 67  KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEF 126

Query: 124 RSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMADT-HELGGSNVVVDRAT 183
           R++FE YG ++D  +  DQ ++  RG GF++F S DSV+ ++  T H+L G  V V RA 
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRAL 186

Query: 184 PKDDDFRPIGKMPQGGGGGGGGYGAYNAY 196
           PKD +      +  GGG G GG G +  Y
Sbjct: 187 PKDAN----PGIASGGGRGSGGAGGFPGY 211

HSP 2 Score: 94.7 bits (234), Expect = 1.2e-19
Identity = 66/245 (26.94%), Postives = 107/245 (43.67%), Query Frame = 1


Query: 92  RIFVARISQTVTEAAFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITFASSDSVENLMAD 151
           ++F+  IS    E   R +F  +GE+  + + +++ +   RG GF+ F+    ++ ++ D
Sbjct: 7   KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66

Query: 152 THELGGSNVVVDRATPKDDDFRPIGKMPQGGGGGGGGYGAYNAYISAATRYAALGAPTLY 211
            H +   +V V RA  +++         Q   G  G + A   + S A            
Sbjct: 67  KHHIDNRDVDVKRAMSREE---------QSPAGRSGTFNASRNFDSGANVRT-------- 126

Query: 212 DHPGSVYGRREFRGMGKKIFVGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGF 271
                           KKIFVG LP   ++D+ R YF  +G + D  +  D      RGF
Sbjct: 127 ----------------KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGF 186

Query: 272 GFVTF-AEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAGAGASGASGTFMMNSAADSF 331
           GFV+F +ED V   + +  H++ G+QV +  A P  DA  G  + G  G    +  A  F
Sbjct: 187 GFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALP-KDANPGIASGGGRG----SGGAGGF 213

Query: 332 GGYVG 336
            GY G
Sbjct: 247 PGYGG 213

[Close]

BLAST of Cucsa.366860.9 vs. NCBI nr
Match: gi|778670030|ref|XP_011649346.1| (PREDICTED: RNA-binding protein Musashi homolog 1 [Cucumis sativus])

HSP 1 Score: 714.5 bits (1843), Expect = 9.1e-203
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 1


Query: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120
           LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL
Sbjct: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ 180
           YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ
Sbjct: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ 180

Query: 181 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS 240
           GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS
Sbjct: 181 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS 240

Query: 241 ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID 300
           ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID
Sbjct: 241 ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID 300

Query: 301 SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 352
           SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD
Sbjct: 301 SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 351

[Close]

BLAST of Cucsa.366860.9 vs. NCBI nr
Match: gi|659115957|ref|XP_008457826.1| (PREDICTED: RNA-binding protein Musashi homolog 1 [Cucumis melo])

HSP 1 Score: 702.6 bits (1812), Expect = 3.6e-199
Identity = 348/351 (99.15%), Postives = 348/351 (99.15%), Query Frame = 1


Query: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA
Sbjct: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60

Query: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120
           LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL
Sbjct: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ 180
           YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGS VVVDRATPKDDDFRPIGKMPQ
Sbjct: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSTVVVDRATPKDDDFRPIGKMPQ 180

Query: 181 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS 240
             GGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS
Sbjct: 181 --GGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRREFRGMGKKIFVGRLPQEAS 240

Query: 241 ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID 300
           ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID
Sbjct: 241 ADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAID 300

Query: 301 SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 352
           SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD
Sbjct: 301 SATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 349

[Close]

BLAST of Cucsa.366860.9 vs. NCBI nr
Match: gi|1009145034|ref|XP_015890115.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Ziziphus jujuba])

HSP 1 Score: 597.8 bits (1540), Expect = 1.2e-167
Identity = 298/352 (84.66%), Postives = 323/352 (91.76%), Query Frame = 1


Query: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWDVDT+GLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFA+ EDAKNA
Sbjct: 1   MERKLVVLGIPWDVDTDGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVEDAKNA 60

Query: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120
           LS EHFLGNRM+EVKVATPKEEMR P K+VTRIFVARI Q+VT+A FRSHFEKYGEITDL
Sbjct: 61  LSGEHFLGNRMLEVKVATPKEEMRVPAKKVTRIFVARIPQSVTQATFRSHFEKYGEITDL 120

Query: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ 180
           YMPKDQGSK HRGIGFITFA+++SV++LMA+THELGGS VVVDRATPK+DDFRPIG+M Q
Sbjct: 121 YMPKDQGSKMHRGIGFITFANAESVDSLMAETHELGGSTVVVDRATPKEDDFRPIGRMAQ 180

Query: 181 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRRE-FRGMGKKIFVGRLPQEA 240
                 GGYGAYNAYISAATRYAALGAPTLYDHPGSVYGR E  RG+GKKIFVGRLPQEA
Sbjct: 181 ------GGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGESSRGLGKKIFVGRLPQEA 240

Query: 241 SADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAI 300
           + +DLRQYFGRFGRILDVY+P+DPKR+GHRGFGFVTFAEDGVADRVSRRSHEICGQQVAI
Sbjct: 241 TIEDLRQYFGRFGRILDVYIPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAI 300

Query: 301 DSATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 352
           D+ATPLDDAGAGA        F++NS A+SFGGY GPMRTYGRMYGSLDFDD
Sbjct: 301 DTATPLDDAGAGA-------NFILNS-AESFGGYGGPMRTYGRMYGSLDFDD 338

[Close]

BLAST of Cucsa.366860.9 vs. NCBI nr
Match: gi|1012127257|ref|XP_015963980.1| (PREDICTED: RNA-binding protein Musashi homolog 1 [Arachis duranensis])

HSP 1 Score: 586.3 bits (1510), Expect = 3.7e-164
Identity = 293/350 (83.71%), Postives = 315/350 (90.00%), Query Frame = 1


Query: 3   RKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNALS 62
           RKLVVLGIPWDVDTEGLREYMSK+GELEDCIVMKERSTGRSRGFGYVTFA+ +DAK+ LS
Sbjct: 4   RKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLS 63

Query: 63  SEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDLYM 122
            EH LGNRM+EVKVATPKEEMRAPPK+VTRIFVARI Q+VTEA+FRSHFEKYG+ITDLYM
Sbjct: 64  GEHVLGNRMLEVKVATPKEEMRAPPKKVTRIFVARIPQSVTEASFRSHFEKYGDITDLYM 123

Query: 123 PKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQGG 182
           PKDQGSK HRGIGFITFAS+DSVE+LMA+THELGGS VVVDRATPKDDDF+P+G+MPQ  
Sbjct: 124 PKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVVVDRATPKDDDFKPVGRMPQ-- 183

Query: 183 GGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRRE-FRGMGKKIFVGRLPQEASA 242
               GGYGAYNAYISAATRYAALGAPTLYDHPG VYGR E  RG+GKKIFVGRLP EA++
Sbjct: 184 ----GGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPSRGIGKKIFVGRLPPEATS 243

Query: 243 DDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDS 302
           +DLRQYFGRFGRILDVYVP+DPKRSGHRGFGFVTFAEDGVADRVSRR HEICGQQVA+DS
Sbjct: 244 EDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRPHEICGQQVALDS 303

Query: 303 ATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 352
           ATP+DDA         S  FMMN    SFGGY GPMRTYGRMYGSLDFDD
Sbjct: 304 ATPVDDA-------SPSENFMMNGVG-SFGGYGGPMRTYGRMYGSLDFDD 339

[Close]

BLAST of Cucsa.366860.9 vs. NCBI nr
Match: gi|703088843|ref|XP_010093639.1| (Uncharacterized RNA-binding protein [Morus notabilis])

HSP 1 Score: 584.7 bits (1506), Expect = 1.1e-163
Identity = 289/354 (81.64%), Postives = 320/354 (90.40%), Query Frame = 1


Query: 1   MDRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFATDEDAKNA 60
           M+RKLVVLGIPWDVDT+GLR+YM+KFGELEDCIVMKERSTGRSRGFGYVTFA++EDAKNA
Sbjct: 1   MERKLVVLGIPWDVDTDGLRDYMTKFGELEDCIVMKERSTGRSRGFGYVTFASEEDAKNA 60

Query: 61  LSSEHFLGNRMMEVKVATPKEEMRAPPKRVTRIFVARISQTVTEAAFRSHFEKYGEITDL 120
           LS EHFL NRM+EVKVATPKEEMRAP K+VTRIFVARI Q+V +A F+SHFEKYGEITDL
Sbjct: 61  LSGEHFLRNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVAKATFQSHFEKYGEITDL 120

Query: 121 YMPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQ 180
           YMPKDQGS THRGIGFITFA+++SV+NLMA+THELGGS VVVDRATPK+DDFRPIG+M Q
Sbjct: 121 YMPKDQGSTTHRGIGFITFANAESVDNLMAETHELGGSTVVVDRATPKEDDFRPIGRMAQ 180

Query: 181 GGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGR---REFRGMGKKIFVGRLPQ 240
                 GGYGAYNAYISAATRYAALGAPTLYDHPG++YG       RG+GKKIFVGRLPQ
Sbjct: 181 ------GGYGAYNAYISAATRYAALGAPTLYDHPGTMYGNGRGESTRGLGKKIFVGRLPQ 240

Query: 241 EASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQV 300
           EA+ +DLRQYFGRFGRILDVY+P+DPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQV
Sbjct: 241 EATIEDLRQYFGRFGRILDVYIPRDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQV 300

Query: 301 AIDSATPLDDAGAGAGASGASGTFMMNSAADSFGGYVGPMRTYGRMYGSLDFDD 352
           AID+ATP+DDA       G SG F++NS A++FGGY GPMRTYGRMYGSLDFDD
Sbjct: 301 AIDTATPVDDA-------GTSGNFVVNS-AEAFGGYGGPMRTYGRMYGSLDFDD 340

The following BLAST results are available for this feature:

BLAST of Cucsa.366860.9 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNP1_ARATH	3.8e-31	36.89	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 S...	[more]
MSI1H_HUMAN	8.7e-28	36.13	RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1	[more]
MSI1H_RAT	1.1e-27	36.13	RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1	[more]
MSI1H_MOUSE	1.1e-27	36.13	RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1	[more]
ROA1_BOVIN	3.6e-26	35.86	Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2	[more]

BLAST of Cucsa.366860.9 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMN9_CUCSA	6.4e-203	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285910 PE=4 SV=1	[more]
W9QU11_9ROSA	7.6e-164	81.64	Uncharacterized RNA-binding protein OS=Morus notabilis GN=L484_011062 PE=4 SV=1	[more]
A0A0B2SCU6_GLYSO	4.2e-162	80.78	Heterogeneous nuclear ribonucleoprotein 27C OS=Glycine soja GN=glysoja_003822 PE...	[more]
K7LN75_SOYBN	4.2e-162	80.78	Uncharacterized protein OS=Glycine max GN=GLYMA_11G055500 PE=4 SV=1	[more]
V4SF15_9ROSI	4.2e-162	82.10	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025943mg PE=4 SV=1	[more]

BLAST of Cucsa.366860.9 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36960.1	7.8e-152	72.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	2.1e-32	36.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.2	4.7e-32	36.92	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	1.8e-31	35.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G33410.1	1.8e-31	37.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cucsa.366860.9 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670030\|ref\|XP_011649346.1\|	9.1e-203	100.00	PREDICTED: RNA-binding protein Musashi homolog 1 [Cucumis sativus]	[more]
gi\|659115957\|ref\|XP_008457826.1\|	3.6e-199	99.15	PREDICTED: RNA-binding protein Musashi homolog 1 [Cucumis melo]	[more]
gi\|1009145034\|ref\|XP_015890115.1\|	1.2e-167	84.66	PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Ziziphus jujuba]	[more]
gi\|1012127257\|ref\|XP_015963980.1\|	3.7e-164	83.71	PREDICTED: RNA-binding protein Musashi homolog 1 [Arachis duranensis]	[more]
gi\|703088843\|ref\|XP_010093639.1\|	1.1e-163	81.64	Uncharacterized RNA-binding protein [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.366860	Cucsa.366860	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.366860.9	Cucsa.366860.9-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.366860.9.CDS.12	Cucsa.366860.9.CDS.12	CDS
Cucsa.366860.9.CDS.11	Cucsa.366860.9.CDS.11	CDS
Cucsa.366860.9.CDS.10	Cucsa.366860.9.CDS.10	CDS
Cucsa.366860.9.CDS.9	Cucsa.366860.9.CDS.9	CDS
Cucsa.366860.9.CDS.8	Cucsa.366860.9.CDS.8	CDS
Cucsa.366860.9.CDS.7	Cucsa.366860.9.CDS.7	CDS
Cucsa.366860.9.CDS.6	Cucsa.366860.9.CDS.6	CDS
Cucsa.366860.9.CDS.5	Cucsa.366860.9.CDS.5	CDS
Cucsa.366860.9.CDS.4	Cucsa.366860.9.CDS.4	CDS
Cucsa.366860.9.CDS.3	Cucsa.366860.9.CDS.3	CDS
Cucsa.366860.9.CDS.2	Cucsa.366860.9.CDS.2	CDS
Cucsa.366860.9.CDS.1	Cucsa.366860.9.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.366860.9.three_prime_UTR.1	Cucsa.366860.9.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.366860.9.five_prime_UTR.2	Cucsa.366860.9.five_prime_UTR.2	five_prime_UTR
Cucsa.366860.9.five_prime_UTR.1	Cucsa.366860.9.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 93..157 score: 3.8E-11coord: 5..63 score: 2.3E-14coord: 230..284 score: 5.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 92..163 score: 1.2E-16coord: 4..75 score: 1.5E-21coord: 229..300 score: 4.8
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 3..79 score: 16.347coord: 91..167 score: 14.761coord: 228..304 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 3..84 score: 2.3E-24coord: 87..188 score: 1.3E-20coord: 227..310 score: 7.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..88 score: 1.33E-24coord: 87..191 score: 1.48E-22coord: 228..320 score: 3.76
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 329..338 score: 5.6E-50coord: 2..274 score: 5.6