Cucsa.365950.2 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCAACCTCCTTCATCCAAAACTAACTAATTTACTCTCTAACAAGAACCCACTACTAACCTCCCCATCTTTGTCCGCCACCGCCACCACCAAATGCGGTGGCCGGCCTTCAAGATCGGCGGCCTTGGCCTCATCGCCATATCATATGTCTCCATCGACTACCTCTCCCACCTCTCGCCCACATGGCATTCCCGTCTCCAGCCAGCTCTCTGGTCTCTTCTTGCCCTTGCCGCCATCTTTCGTGTTCCCTTCTACAAGCACTGGTCCTCCGAGTTCCGTTCCGCCATTCCATTTCTCGCCTCCATGCTCTTTATGCTCACCGCTCTTCTCTTCGAAGCCCTCTCCGTTCGATTCGTCACCGCTGTCCTTGGTCTCGACTGGCACAGGTAATGTAAGGATTTGGATCTCTCTCTTTTGTGATTCCTGTGTTTGTAGATTGAAAACTGAAGTGGGTTGCACCAATCTTTACTTTGATTTGGACTTCGGGGGAGAaGATTGGTTTTTATTTTTGAGCTGCATAAACCTCAAATTGATTCCTAATTGTATTAGATGGTTAAGTTTATGTGCGAGTCTGTGGATCTGCTTGCTTCAGTTAACACACCGATTTTGGAAATATTTTCATTTGGGGATGGATCTGATATTTTTGGTATGTGGAGCTTGAGTTTCCAGATTTGAACTTCACGAACCCGTTGACTGAAAAACATTAATTTTTTtAGAAGTTGAACAAAAAGGTATTTATACCCTGATTGTTTGTCTAATTATGAGATATAATAAATGACATACTAGTTCTTTGTAAAAGATTTGTGAGTTCAGTCCCAGTATGGTATTAAAGTTCTTTAGATTTTGTTTCTATCACCAATGGAAAGAGATCTTGGCTAATAATTTATTTTTGGTAACCCATATATTAACATTTTCTTTCACACACTGACAGAACCTAGTTTAGAAATTGCAGGGCATCAGTCAACTATTTTACTTATTTTCAATTTTTTtAAAATATGCCCTTTTCTTTTTATTTATCTTTTAAAAAGAATTGAAATGGTTGATCCAATTTCTATGCTTATTCAGAATACAAGCCATCATCCAATGAAATTTACGAGATGCAGTGAGTGTGGATGAAATTCGATGTCGGCTTTACTTGATAGTTATCGGATTTGAAGAGAACATCTGTTGGTAGTTGATGCAGCCGTTATATTTTAAAACAAATCTACCAAGTCCTTAGTTGTTTTGAGGACTGAATCTGGCAAGCATCTAGCAAATCTATGGGATTTTTAGCAAGCATCTTATAGTACTTTCAATCTTCTGAACACAAAAAaaTAAAAATGCATGTCTTTAGTAGTTTTGTTAATATCCAATTTtGGAATTTAAATCATACATTGATTTTCTGTTTTGGTATACAACCAATACAGTTTACAATTGAGAATGGAACTTTCAGAAAATCTATTTTTGGGCTCTTCTAGAACAGAATTATAATTCTTGTACGGGTCTACCACAGTGAGATATATGTTTCTTGTTCTGCATTTTATGCGAATCTATGTAATTTAGTAATAAAGTTGGTGCTGAAATATAAGTCCGCTTAAGTGACTAATTTTTTtCTTCTTTTATTATTCTAATAACTTGAAAGTTGCTATTTCTATTCAGAACCCACATTGTGAAACTGTTTTACTCATTAGCAGTATATGTAGTTTCATTTCCCTGTTGGTTTTATTTTCATTTAAAATTCTAAGATTGTGGCTTTCTTGACATTTGACAGTGACGCAGCTCCTCTTCCTGATACTGGCCAATGGCTACTCTTGGCATTGAACGAGAAACTTCCTCCAGCTGTCGTGGAGATATTGAGAGCTCGGATTATTGGATTGCACCATTTTCTAATGTTGTTCATTATGTTGGCGTTCTCTGTGCTTTTTGACTCAGTTAAAGCTCCTGGACTTGGACTTGGTGCAAGGTATATGTTCACCATGGCAATCGGTCGACTTCTTAGAGCCATAACTTTTGTATCTACAATTCTACCATCTGCAAGGCCATGGTGTGCTTATTCTCGATTCAGAGTCCCTCCATACCCTCATCGTTGGGCACAGAAGTACTATGTTCCTTATGCTGAAGATGCTGATACAATTCGCCAGTTATTAAATCAGGACATAGCATTTGGTGAGTGACTTAAATTTTTCCATTTCCTTCATGCACATTTCCAAGACCCAAACGCCTAACACTTTTATCCTGACCCGAAAATACTTTCCACTGAAAACCATCATAGTTGAAACAAAGAGCAATTTATTTTTGGATTTGAAAAGAGTTAAAAAGCACTCAAACTGCTTTGTAAGAAAATATTTGTAGTGCTTTTAGCCTTTTATACTTTTAGAAGTGTGGAACCAAACATTAAGATTAGATGATTTAATTTGTTATTGAGCAACCTTTTAAATTCCTTATTTGTATTGCTTTCTAGAATATAGTGTGCACATAATGACTGGAATTTTCTCTATTCTATGCGTTGTGCTTACACTTTTCTGAGTTGTTAACGCATAAAATTTGTTATTTTCACAGCTGATCCCGGACAGATTCTTGGTGACTACAGACCTGATTGGGGTAAAATGAGCTTCTTATTAGATTTCCTTCGACCGACACCCTCCGAAGGATCTTCTTGGTACAATTTGCTTAAGAAGGCTGGAGGTGGCTGCAACGACCTTGTATACAGTGGCCACATGCTCGTTGCTGTCCTCACTGCCATGGCATGGACGGTATATACCCTATCGTGCAGTTTGCTTGATGTGATATAATGTTTTCTTTTTtGGCTAGCATAATTAAGTATCTTAATACCAGAAATATTGAAACAGGAGGCTTATGGAGGTCTTAGCTCAGCTGTTGTATGGTTTTTCGTAATACACAGTGCTCAGCGTGAAATACGAGAACGCCATCATTACTCTGTCGATTGTGTTGTTGCAATATACGTTGGGATTCTCTTGTGGAAAATGACTGGCTTCATTTGGTCAGCTAAAGATGTCACGAGACGTCGAAAGCTAGTGAAGTTGGAGAAGATTCAAAATAAACTAGTACAAGCTGCAAAAGATGCAGATATTGATGAGGTGAGAGAACTTCTAAAGGAAATAGAGGTAACTAGTCAGGAGAGTGACAATGAAAGAAATCGAGGCCAGAGCGGAGTGTTGTGGTTCTTCGCTTGTGCGACAGTATTTGCTGCACTTGTTATTGTTCTTCTAGCCTTCACATGGACAAGTGATGGATAAATTTACTTGAAGCAATGACACGTTCCACGGGCTCACGAATACGGATTATCTTATGCAAAGTTTTGTAACGGTATCCGATTTCTCCCTCTGCCAAAGAAGGGAAAAAAaCAAAAAAaGATCTTGTTTAGTTTATCGCTAGGATTTGTGGTGAATGTTGTTTTCTTGTAGAGTGTAATGAATGGTGATATGGTTTTAGATTGTGATGTTTGATAAGT CTCAACCTCCTTCATCCAAAACTAACTAATTTACTCTCTAACAAGAACCCACTACTAACCTCCCCATCTTTGTCCGCCACCGCCACCACCAAATGCGGTGGCCGGCCTTCAAGATCGGCGGCCTTGGCCTCATCGCCATATCATATGTCTCCATCGACTACCTCTCCCACCTCTCGCCCACATGGCATTCCCGTCTCCAGCCAGCTCTCTGGTCTCTTCTTGCCCTTGCCGCCATCTTTCGTGTTCCCTTCTACAAGCACTGGTCCTCCGAGTTCCGTTCCGCCATTCCATTTCTCGCCTCCATGCTCTTTATGCTCACCGCTCTTCTCTTCGAAGCCCTCTCCGTTCGATTCGTCACCGCTGTCCTTGGTCTCGACTGGCACAGGTAATTGACGCAGCTCCTCTTCCTGATACTGGCCAATGGCTACTCTTGGCATTGAACGAGAAACTTCCTCCAGCTGTCGTGGAGATATTGAGAGCTCGGATTATTGGATTGCACCATTTTCTAATGTTGTTCATTATGTTGGCGTTCTCTGTGCTTTTTGACTCAGTTAAAGCTCCTGGACTTGGACTTGGTGCAAGGTATATGTTCACCATGGCAATCGGTCGACTTCTTAGAGCCATAACTTTTGTATCTACAATTCTACCATCTGCAAGGCCATGGTGTGCTTATTCTCGATTCAGAGTCCCTCCATACCCTCATCGTTGGGCACAGAAGTACTATGTTCCTTATGCTGAAGATGCTGATACAATTCGCCAGTTATTAAATCAGGACATAGCATTTGCTGATCCCGGACAGATTCTTGGTGACTACAGACCTGATTGGGGTAAAATGAGCTTCTTATTAGATTTCCTTCGACCGACACCCTCCGAAGGATCTTCTTGGTACAATTTGCTTAAGAAGGCTGGAGGTGGCTGCAACGACCTTGTATACAGTGGCCACATGCTCGTTGCTGTCCTCACTGCCATGGCATGGACGGAGGCTTATGGAGGTCTTAGCTCAGCTGTTGTATGGTTTTTCGTAATACACAGTGCTCAGCGTGAAATACGAGAACGCCATCATTACTCTGTCGATTGTGTTGTTGCAATATACGTTGGGATTCTCTTGTGGAAAATGACTGGCTTCATTTGGTCAGCTAAAGATGTCACGAGACGTCGAAAGCTAGTGAAGTTGGAGAAGATTCAAAATAAACTAGTACAAGCTGCAAAAGATGCAGATATTGATGAGGTGAGAGAACTTCTAAAGGAAATAGAGGTAACTAGTCAGGAGAGTGACAATGAAAGAAATCGAGGCCAGAGCGGAGTGTTGTGGTTCTTCGCTTGTGCGACAGTATTTGCTGCACTTGTTATTGTTCTTCTAGCCTTCACATGGACAAGTGATGGATAAATTTACTTGAAGCAATGACACGTTCCACGGGCTCACGAATACGGATTATCTTATGCAAAGTTTTGTAACGGTATCCGATTTCTCCCTCTGCCAAAGAAGGGAAAAAAACAAAAAAAGATCTTGTTTAGTTTATCGCTAGGATTTGTGGTGAATGTTGTTTTCTTGTAGAGTGTAATGAATGGTGATATGGTTTTAGATTGTGATGTTTGATAAGT ATGGCATTCCCGTCTCCAGCCAGCTCTCTGGTCTCTTCTTGCCCTTGCCGCCATCTTTCGTGTTCCCTTCTACAAGCACTGGTCCTCCGAGTTCCGTTCCGCCATTCCATTTCTCGCCTCCATGCTCTTTATGCTCACCGCTCTTCTCTTCGAAGCCCTCTCCGTTCGATTCGTCACCGCTGTCCTTGGTCTCGACTGGCACAGGTAATTGACGCAGCTCCTCTTCCTGATACTGGCCAATGGCTACTCTTGGCATTGAACGAGAAACTTCCTCCAGCTGTCGTGGAGATATTGAGAGCTCGGATTATTGGATTGCACCATTTTCTAATGTTGTTCATTATGTTGGCGTTCTCTGTGCTTTTTGACTCAGTTAAAGCTCCTGGACTTGGACTTGGTGCAAGGTATATGTTCACCATGGCAATCGGTCGACTTCTTAGAGCCATAACTTTTGTATCTACAATTCTACCATCTGCAAGGCCATGGTGTGCTTATTCTCGATTCAGAGTCCCTCCATACCCTCATCGTTGGGCACAGAAGTACTATGTTCCTTATGCTGAAGATGCTGATACAATTCGCCAGTTATTAAATCAGGACATAGCATTTGCTGATCCCGGACAGATTCTTGGTGACTACAGACCTGATTGGGGTAAAATGAGCTTCTTATTAGATTTCCTTCGACCGACACCCTCCGAAGGATCTTCTTGGTACAATTTGCTTAAGAAGGCTGGAGGTGGCTGCAACGACCTTGTATACAGTGGCCACATGCTCGTTGCTGTCCTCACTGCCATGGCATGGACGGAGGCTTATGGAGGTCTTAGCTCAGCTGTTGTATGGTTTTTCGTAATACACAGTGCTCAGCGTGAAATACGAGAACGCCATCATTACTCTGTCGATTGTGTTGTTGCAATATACGTTGGGATTCTCTTGTGGAAAATGACTGGCTTCATTTGGTCAGCTAAAGATGTCACGAGACGTCGAAAGCTAGTGAAGTTGGAGAAGATTCAAAATAAACTAGTACAAGCTGCAAAAGATGCAGATATTGATGAGGTGAGAGAACTTCTAAAGGAAATAGAGGTAACTAGTCAGGAGAGTGACAATGAAAGAAATCGAGGCCAGAGCGGAGTGTTGTGGTTCTTCGCTTGTGCGACAGTATTTGCTGCACTTGTTATTGTTCTTCTAGCCTTCACATGGACAAGTGATGGATAA MAFPSPASSLVSSCPCRHLSCSLLQALVLRVPFRHSISRLHALYAHRSSLRSPLRSIRHRCPWSRLAQVIDAAPLPDTGQWLLLALNEKLPPAVVEILRARIIGLHHFLMLFIMLAFSVLFDSVKAPGLGLGARYMFTMAIGRLLRAITFVSTILPSARPWCAYSRFRVPPYPHRWAQKYYVPYAEDADTIRQLLNQDIAFADPGQILGDYRPDWGKMSFLLDFLRPTPSEGSSWYNLLKKAGGGCNDLVYSGHMLVAVLTAMAWTEAYGGLSSAVVWFFVIHSAQREIRERHHYSVDCVVAIYVGILLWKMTGFIWSAKDVTRRRKLVKLEKIQNKLVQAAKDADIDEVRELLKEIEVTSQESDNERNRGQSGVLWFFACATVFAALVIVLLAFTWTSDG*
BLAST of Cucsa.365950.2 vs. TrEMBL
Match: A0A0A0K7Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016930 PE=4 SV=1) HSP 1 Score: 676.0 bits (1743), Expect = 2.8e-191 Identity = 342/387 (88.37%), Postives = 350/387 (90.44%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. TrEMBL
Match: B9H7T1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21540g PE=4 SV=2) HSP 1 Score: 563.5 bits (1451), Expect = 2.0e-157 Identity = 277/382 (72.51%), Postives = 318/382 (83.25%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. TrEMBL
Match: A0A061FIN1_THECC (Sphingomyelin synthetase family protein isoform 1 OS=Theobroma cacao GN=TCM_035631 PE=4 SV=1) HSP 1 Score: 555.8 bits (1431), Expect = 4.2e-155 Identity = 276/382 (72.25%), Postives = 313/382 (81.94%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. TrEMBL
Match: A0A061FHG1_THECC (Sphingomyelin synthetase family protein isoform 4 OS=Theobroma cacao GN=TCM_035631 PE=4 SV=1) HSP 1 Score: 555.1 bits (1429), Expect = 7.2e-155 Identity = 269/341 (78.89%), Postives = 301/341 (88.27%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. TrEMBL
Match: A0A059BYV2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04230 PE=4 SV=1) HSP 1 Score: 552.0 bits (1421), Expect = 6.1e-154 Identity = 278/386 (72.02%), Postives = 313/386 (81.09%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. TAIR10
Match: AT1G43580.1 (AT1G43580.1 Sphingomyelin synthetase family protein) HSP 1 Score: 488.0 bits (1255), Expect = 5.5e-138 Identity = 242/332 (72.89%), Postives = 273/332 (82.23%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. NCBI nr
Match: gi|778709822|ref|XP_011656463.1| (PREDICTED: uncharacterized protein LOC101212215 isoform X2 [Cucumis sativus]) HSP 1 Score: 811.6 bits (2095), Expect = 6.1e-232 Identity = 400/401 (99.75%), Postives = 400/401 (99.75%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. NCBI nr
Match: gi|449441209|ref|XP_004138375.1| (PREDICTED: uncharacterized protein LOC101212215 isoform X1 [Cucumis sativus]) HSP 1 Score: 676.0 bits (1743), Expect = 4.0e-191 Identity = 342/387 (88.37%), Postives = 350/387 (90.44%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. NCBI nr
Match: gi|659126226|ref|XP_008463076.1| (PREDICTED: uncharacterized protein LOC103501312 [Cucumis melo]) HSP 1 Score: 663.3 bits (1710), Expect = 2.7e-187 Identity = 335/387 (86.56%), Postives = 345/387 (89.15%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. NCBI nr
Match: gi|566172539|ref|XP_002306701.2| (hypothetical protein POPTR_0005s21540g [Populus trichocarpa]) HSP 1 Score: 563.5 bits (1451), Expect = 2.9e-157 Identity = 277/382 (72.51%), Postives = 318/382 (83.25%), Query Frame = 1
BLAST of Cucsa.365950.2 vs. NCBI nr
Match: gi|590600742|ref|XP_007019527.1| (Sphingomyelin synthetase family protein isoform 1 [Theobroma cacao]) HSP 1 Score: 555.8 bits (1431), Expect = 6.0e-155 Identity = 276/382 (72.25%), Postives = 313/382 (81.94%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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