Cucsa.356340.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACTTCTTCACATCGGTAGCATTACACACCTCCTTGCTTTCTTACATACATCGAAACCAGCCAAAGCCAACGGAAACATCTCTTTTTGAGAACATGCCAAGAGATCGTGACCCTTTGGTTGTTGGGAGAGTCATCGGCGACGTCGTTGACCCATTCTCGAGGTCAATTTCGATTAGGGTTACTTACTCCACCAAGGAAGTTAACAATGGTTGTGAGCTCAAACCCTCTCAGGTTGTAAATCAACCAAGAGTCGAGATTGGTGGGACCGATCTTCGAACCTTCTTCACTTTGGTAAATGCTTTAATCTTTTTTTTTCTCCTTCCCATGTCTTTTTAAATTGATATATTTTGTGGAAAATTGTTTTAACTAGAAAAATTACTGAAAATATTTTCAAATCTAGCAAAATGTTAGAGTCTATCAACAAATTATTGTAATAGACCGCAATATAAATTAACTATCTATGTTATCATTTTTTTTAGAAAAGATAGAGTTTGGATCATGAAGGTTGCATTGGAACAACATCCGCACGAGATAGACACCTTCATATCCCCTAATCAAAATATATTCAATAAAGCTCAAACAAATACAAAAATTGATACACATATCACATAGAGGTAGAGATAAGTCCAAGAAAGAGAGTTACATAGTACAAAAAGAACTAAGATTCATAGCAATTGTCAAAGGATTATAATATTAAAAAAGACCGTGTCTATCAACATAAATAGAAGACGACTATCGCTAACCAACTTTGATATTTTACTCTATTTGTAAATATTGTCCTTCATTCATTTTATTGGCTAATTTCTATGTGTTAATAGGTTATGGTGGATCCTGATGCTCCTAGCCCTAGTGATCCTAATCTTAGGGAATACTTGCATTGGTACTTCCTCTTTTACTTCTTTAGTTCAAATTAACAAGTTTATTTTCAATCAACTTTTGGTTGCTTGTTTCTTTTCCTTTTCAATTCTTAACTCTCTCTCTTTTTTCTTCATTTAAGCTCATGCATTTTATAGATATATTAAAAACATGTTAACAGTAATGTAAAAATAAGGTTTTCTTAAAAATATTTAGGGTCATACATCAACATTTTCATTTGTCATATTCATCTTACTAAAACTTGGCTATCCAAAATTCTTTGAATGGAGGATGAATAGAAAATGTAATATTCATAATAAAAAAGTAAAGATATAATTTGTGGAGGATAAAATATTTTTATGTTAACTTTACATTTCCTTTAGTTAAATTCAACTGTTATTTGGGAATTTTTAAAAACAACAAGTACATTTCTAAAAGCTATTGATTTCCAAATTGTGGTTAAAAACAACTTTAAGGTACATTTCTAAAAGCTATTGATTTCCAAATTGTGGTTAAAATAACTTTAGGTACATATATTGGAATAAATTTTGAGGTACAAGCAAGAGTTTTGGTAAATACTGTTTGAAAAGAAAATTCTTTAGATTTTTTTCATAGAATATATGATCAATCTATCTTTTCAACACAAATAAAGTGCACTTTTTTTTCCACTAGGTTATGTAGGGTAAATTAAATGTCATACAATAATAACAATAATAGGGGTCTTTTAAAAAATATAATACTCTATAGAACAATTTTGAAAACGAAAAATCTACACAAATTCACAATGGAAAATATAAAAGAATGCCTCACGATTAATTGGCATCTAGCGCACGTAATATATTTGGGAAACGATAATTTAAATTTAGCTATTCTTTCTTACACGTTGTTTGTTGTTTATATTTAATCGTTTAAATTTGAGTAACCAAATCTTAACGATTTTTTGGTTCACGGTCGTTTAGATTTGACACATGGTCGTTTAGATTTGACATATGATCGTTTAGATTTAATTTGATTGTTTAAATTTGGATAGCTAAATCTCAATTATTTTTTTCACGATCGTTAATTTATATATATTTGGATCACGATCGTTTAAATGTTTTTTGGTACAGGATCGTTTACATTTAACAATCCAATATCCAAACGATTTTTTTCACTGTCTTTTATATTTGACACGTGATCTTAAACAACCCAATAACAACCGAAAAAATAGATATTTTATATTTGGTACACGATCTTGAACCAAATAACAGTTTGAAAATAAATGCAGAAGAAGAGAAAAAGACGATGAAAAGGAAAAGAAAAATTGCAGAAGGAAGAGTATAAAAAGGAAGGACAAACGAAAATATTTTAAAAAATCACCGACAAAAGAAAACCTATAATTGTTTTAAAAAATGTTCAGTTTTATGAGTTTTTTCATTTTGTTACACGAACCATAAATGTTTTGCCGATTTGTTATATTTATGAAAGTTATCCTTAATAATAACCACTCCAAAATAATATATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTAATAATATATATATATATATATATATATATATATATATATATATATATATATAATCTATTCTCATGAAATAATTTTTTAATGCATTTACTAAAGGGTTGGTTTTACTTTGGAGAACTTTTTCAAAAGGAAAGTTGTGGTTTCTCCTCTAGGTATTCTCCTATTCTTCCATAGCCTTCTTTTTTTCTTTTTATTTTTCTTCCTTTTCATCTTTCTGTTAAAAGCCTTACCTCTCTTTTCACAACTATTGATAATAATAATAAAACAATTATCAATAGAACCAAACATAGTTCTCATGGATAGACTGATATATGTATAGATATGCATTTTCACTCATAAACGATACTTTTATACCTTTAAACTCAAAAGTAAATAATTAAATTAGCCTATAACCATATATTTTCTTTTTCGTTTGAAAATATTACGACTTTTTTCACCATATCTTTCAAAGATTTACCTGCATCTTTCTTGACTATAATAATTGTATTCTTAGTCAAATTTCATAAACAAAAACAACTTTCTAAAATCTAACTTTAATTAGTTTTCATATTTTGGCTTTATTTTTCAAACTATTGGTACTAGCATATAGTTAACAAATAAAGAATGAGGGAGGTGGAAGCAATGTCTATGAGATTAATTTAAAATCCAAAACAATTGGTTATCAAACAAGTTAACTTTTGAAATACAAGTTGATTATTATTAATGGAATTTTGAATCTCGGATCTTATAACATTAATATTCTATTTCATAAAGAAAAACTGCTTTGGCTAGGTGTGTCTAGATGATATGTATATATATAAAGAACAAATAAGAAAGAAGAGTCTTTTCACTATTAAGAATGAAAGGGGAATAAAGCTGAAACTAGCTTGTCTAATTGATAGATCAACTTCAATACATGAATAAAAGAATTTTTCTTTTATTGTCCTTTCCTTCGTCCAATTAATTATTATCGATTTTTTCAAATATATTACATGATGAGGATTGAAGTGGACACAGATGGGAATCATGGATTATGATCTTCAGCTTTAGAGTAAAAAAAAAAAGGTTAACTAATGAAGAGATTCCTTGTACAAGTACTACACGCTGTTTTCCATTTCTCTCTTGTGGCCCAAAGAAAGAAAGAAAGAAAGAAAAAAGACATGCCCACGGGGTCTTGCTTTTGATTCCCAATAAAGTTTGAACGACTTCTCTAACCAGCCATCCATGAAAATAATAGTAGGAAAAAAGTAAAAAAAGTAGAGGGATGAAAATAGGATCGAAGTTTCGTGGTAAGTTAGATATATCAAAAAGTAAGCCAACACAATTTTCTCTTATATAATACGAGACATGTACAACTTCATTCAACCTTTTTGGTTTTTACCACTGTTTTTTTAGTTTCATTTAATTGCTCCTTTATATTAATCAATTATTTATTATTATGGTTCATTTTGCAGGTTGGTGACTGATATTCCAGCTACAACAGGTGCAACCTTTGGTAAGATGTTTTCCTTTAACTAAACATGCAAATTAAATTCATAAAATAAAGAACAGTTATTTGTAAATTCTAGAGGGTAAGGGGTTGTATTGTTTCTTTTAATACAACATGTAAAAGTGATCAGGAGGGTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAAGAGACCAAACAAAAGAAAATGTGATTGTTTGAATAAGTAGTTTCTAAATTTATTGTAAACGATAAAATGGTGTTTATTAGGAAATGTGATTAAGAGAGAATATTGTAAAAATTGTGTAGGGCAAGAGATAGTATGCTATGAGAGTCCAAGACCAACGGTGGGGATACATCGATTCGTGCTAGTCTTGTTTAGACAACTTGGAAGGCAAACAGTGTACGCACCAGGTTGGCGTCAGAACTTCAATACAAGAGACTTTGCTGAGCTTTACAATCTTGGCTTACCAGTTGCCGCTGTTTATTTCAATTGTCAAAGGGAAAGTGGTTCTGGTGGAAGGAGAAGAGTCCAAGATGATTATTAATTAACTTATAATTAAACCCACTTTTTACGCAATATCACATTATTATTATTGTTGAAAAAATATATTTATACATTTGCAAACATAAGCTCACTTCAACCGACACCTATATCTACTTAAGACGAGAGGTCTTCAGAAGAAAAAAAATAGTTCATTATTATTATTATTATTATTCAACTATATATATGTGAACAGGTGATCGAGGTTGAGGGGTTAATAAGGGCAAAATACTTTGTTGTTTAATTGCCCTTTAAACGATAATATTTGCAATAAGGTCATTTGATATACTAATATTAGAGTTTATTAGTTTTGTTAGTTTTTATTTTGTTACATTATGTTATTAGACGGTTGTATCAAGTGGCTATATATATATATGTGCCCTTTTTCATCATCAATAAAATAAGAAGGG AACTTCTTCACATCGGTAGCATTACACACCTCCTTGCTTTCTTACATACATCGAAACCAGCCAAAGCCAACGGAAACATCTCTTTTTGAGAACATGCCAAGAGATCGTGACCCTTTGGTTGTTGGGAGAGTCATCGGCGACGTCGTTGACCCATTCTCGAGGTCAATTTCGATTAGGGTTACTTACTCCACCAAGGAAGTTAACAATGGTTGTGAGCTCAAACCCTCTCAGGTTGTAAATCAACCAAGAGTCGAGATTGGTGGGACCGATCTTCGAACCTTCTTCACTTTGGTTATGGTGGATCCTGATGCTCCTAGCCCTAGTGATCCTAATCTTAGGGAATACTTGCATTGGTTGGTGACTGATATTCCAGCTACAACAGGTGCAACCTTTGGGCAAGAGATAGTATGCTATGAGAGTCCAAGACCAACGGTGGGGATACATCGATTCGTGCTAGTCTTGTTTAGACAACTTGGAAGGCAAACAGTGTACGCACCAGGTTGGCGTCAGAACTTCAATACAAGAGACTTTGCTGAGCTTTACAATCTTGGCTTACCAGTTGCCGCTGTTTATTTCAATTGTCAAAGGGAAAGTGGTTCTGGTGGAAGGAGAAGAGTCCAAGATGATTATTAATTAACTTATAATTAAACCCACTTTTTACGCAATATCACATTATTATTATTGTTGAAAAAATATATTTATACATTTGCAAACATAAGCTCACTTCAACCGACACCTATATCTACTTAAGACGAGAGGTCTTCAGAAGAAAAAAAATAGTTCattattattattattattattCAACTATATATATGTGAACAGGTGATCGAGGTTGAGGGGTTAATAAGGGCAAAATACTTTGTTGTTTAATTGCCCTTTAAACGATAATATTTGCAATAAGGTCATTTGATATACTAATATTAGAGTTTATTAGTTTTGTTAGTTTTTATTTTGTTACATTATGTTATTAGACGGTTGTATCAAGTGGCTATATATATATATGTGCCCTTTTTCATCATCAATAAAATAAGAAGGG ATGCCAAGAGATCGTGACCCTTTGGTTGTTGGGAGAGTCATCGGCGACGTCGTTGACCCATTCTCGAGGTCAATTTCGATTAGGGTTACTTACTCCACCAAGGAAGTTAACAATGGTTGTGAGCTCAAACCCTCTCAGGTTGTAAATCAACCAAGAGTCGAGATTGGTGGGACCGATCTTCGAACCTTCTTCACTTTGGTTATGGTGGATCCTGATGCTCCTAGCCCTAGTGATCCTAATCTTAGGGAATACTTGCATTGGTTGGTGACTGATATTCCAGCTACAACAGGTGCAACCTTTGGGCAAGAGATAGTATGCTATGAGAGTCCAAGACCAACGGTGGGGATACATCGATTCGTGCTAGTCTTGTTTAGACAACTTGGAAGGCAAACAGTGTACGCACCAGGTTGGCGTCAGAACTTCAATACAAGAGACTTTGCTGAGCTTTACAATCTTGGCTTACCAGTTGCCGCTGTTTATTTCAATTGTCAAAGGGAAAGTGGTTCTGGTGGAAGGAGAAGAGTCCAAGATGATTATTAA MPRDRDPLVVGRVIGDVVDPFSRSISIRVTYSTKEVNNGCELKPSQVVNQPRVEIGGTDLRTFFTLVMVDPDAPSPSDPNLREYLHWLVTDIPATTGATFGQEIVCYESPRPTVGIHRFVLVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGLPVAAVYFNCQRESGSGGRRRVQDDY*
BLAST of Cucsa.356340.1 vs. Swiss-Prot
Match: HD3A_ORYSJ (Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 1.4e-82 Identity = 140/171 (81.87%), Postives = 158/171 (92.40%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. Swiss-Prot
Match: FT_ARATH (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2) HSP 1 Score: 293.1 bits (749), Expect = 2.0e-78 Identity = 133/169 (78.70%), Postives = 153/169 (90.53%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. Swiss-Prot
Match: HD3B_ORYSJ (Protein HEADING DATE 3B OS=Oryza sativa subsp. japonica GN=HD3B PE=2 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 1.0e-77 Identity = 132/168 (78.57%), Postives = 151/168 (89.88%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. Swiss-Prot
Match: TSF_ARATH (Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 3.6e-75 Identity = 130/169 (76.92%), Postives = 148/169 (87.57%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. Swiss-Prot
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 2.1e-54 Identity = 109/171 (63.74%), Postives = 132/171 (77.19%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TrEMBL
Match: B9ZYL0_CUCSA (FT-like protein OS=Cucumis sativus GN=CsFT PE=2 SV=1) HSP 1 Score: 371.3 bits (952), Expect = 6.6e-100 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TrEMBL
Match: A0A0A0M0H5_CUCSA (FT-like protein OS=Cucumis sativus GN=Csa_1G651710 PE=4 SV=1) HSP 1 Score: 368.6 bits (945), Expect = 4.3e-99 Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TrEMBL
Match: A6YE10_CUCMO (FTL2 OS=Cucurbita moschata PE=2 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 4.1e-94 Identity = 166/179 (92.74%), Postives = 174/179 (97.21%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TrEMBL
Match: A6XN27_CUCMA (Flowering locus T-like 2 OS=Cucurbita maxima GN=FTL2 PE=2 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 1.6e-93 Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TrEMBL
Match: A0A077K8V1_FAGCR (Flowering locus T-like protein OS=Fagus crenata GN=FT PE=2 SV=1) HSP 1 Score: 341.7 bits (875), Expect = 5.6e-91 Identity = 160/174 (91.95%), Postives = 169/174 (97.13%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TAIR10
Match: AT1G65480.1 (AT1G65480.1 PEBP (phosphatidylethanolamine-binding protein) family protein) HSP 1 Score: 293.1 bits (749), Expect = 1.2e-79 Identity = 133/169 (78.70%), Postives = 153/169 (90.53%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TAIR10
Match: AT4G20370.1 (AT4G20370.1 PEBP (phosphatidylethanolamine-binding protein) family protein) HSP 1 Score: 282.3 bits (721), Expect = 2.0e-76 Identity = 130/169 (76.92%), Postives = 148/169 (87.57%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TAIR10
Match: AT5G62040.1 (AT5G62040.1 PEBP (phosphatidylethanolamine-binding protein) family protein) HSP 1 Score: 210.7 bits (535), Expect = 7.5e-55 Identity = 105/176 (59.66%), Postives = 138/176 (78.41%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TAIR10
Match: AT5G03840.1 (AT5G03840.1 PEBP (phosphatidylethanolamine-binding protein) family protein) HSP 1 Score: 207.6 bits (527), Expect = 6.4e-54 Identity = 101/169 (59.76%), Postives = 133/169 (78.70%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. TAIR10
Match: AT2G27550.1 (AT2G27550.1 centroradialis) HSP 1 Score: 206.1 bits (523), Expect = 1.9e-53 Identity = 104/171 (60.82%), Postives = 131/171 (76.61%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. NCBI nr
Match: gi|793419578|ref|NP_001292686.1| (protein HEADING DATE 3A [Cucumis sativus]) HSP 1 Score: 371.3 bits (952), Expect = 9.5e-100 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. NCBI nr
Match: gi|700211541|gb|KGN66637.1| (FT-like protein [Cucumis sativus]) HSP 1 Score: 368.6 bits (945), Expect = 6.1e-99 Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. NCBI nr
Match: gi|149127110|gb|ABR20499.1| (FTL2 [Cucurbita moschata]) HSP 1 Score: 352.1 bits (902), Expect = 5.9e-94 Identity = 166/179 (92.74%), Postives = 174/179 (97.21%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. NCBI nr
Match: gi|115343291|gb|ABI94606.1| (flowering locus T-like 2 [Cucurbita maxima]) HSP 1 Score: 350.1 bits (897), Expect = 2.3e-93 Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 1
BLAST of Cucsa.356340.1 vs. NCBI nr
Match: gi|672231720|dbj|BAP28173.1| (flowering locus T-like protein [Fagus crenata]) HSP 1 Score: 341.7 bits (875), Expect = 8.0e-91 Identity = 160/174 (91.95%), Postives = 169/174 (97.13%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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