Cucsa.349300.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTTTGACTTCGTAATTATTATTTGAATTCCGTTTTCTATCAATTGCTTCAAACAGAGAGAGAGAGACGAAGCTTACCGAGCGAAAATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGGTCCCTTTTCTACCTTCTCTCTTCTCTTATATCTTCCTTTCTTTTGATCTGATTTTTCAATTTCTGTGTCTGATTATTCTCTTTTCCTATTTTTGTCCGATGCCTCGGTATCCCTTCGTTTAATTTGTTGTTAATTGATTTGTGAAATTCAGGTACAGTCTTTGACCATTGATATTTTGGATTTCGTTTGTTGAAACATGTATTTGATTGATCAATCATCAATGGGACTTCCTTCCCTTTTTTGTCTTTGACCTAATTTTCTTCTTTAGGACTAGAATCACTTGTACGCGATAAAATTTCTTGGGCAATGAAACCCTGCTTACAGGAGATAAGCAGGAATTGTCTTTGCTCTAACAATGGATTGAAATGAAATGATTTGGAGTGACGTTTACCCAATTTACTCGAGATGTCTTTTATAGTGGATTCAAATTTTTTACTTTTACATAAGATTCTCTCCCTTCTTTACAAATATAATTTACGAGCAATTTGAAACTTTATCATGTTGGGCTTGTCAATTAAATCTAATCTGTTGGTGTCGCATTGAAATTTATTTTCTGTTTATCAACAAAAACTAAGAAAATTACAATAGTAGCATAAACAATAGGTTGTGATGTTACAATGTTAGTTTTTAGTGAGAGCTTCATTTTAAATATAGACCCAAATAGTACGACTGTATTCACTCAAACAAGAATGTCTTGCTTATAAGCTCAAGACTTGTTGTAGCAGGGTATTGCTATGATTTATCATGGTTAGGGAGCAGAAGTTTTTATGTAATTGTTTGTTTAAACAGTTGAATAATTATGCGTCCTCTTCATCTGGTTTTGGTGATCTCCCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATAACCATTTCGGGTCCTTGTTCATTCTTTCAGTTGCTTCTTGTAATCAGCATTTTTTTtATTtGAAACTTTGCTCTATTATATAGATAGTTGGAGTAATTGACTGTGCAATCCATTATCCATTTTTtGTTtAGGTTGGTGATTTtGAGAAaTTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGATTTTGAGGAGCTACTATTTTCCCGTGTGGTTATTTAGCATCATTTGCATTCAGTACTTGCGATACCCTTGTGCTATTTTTGTGATGTTTTTGTGATGTTTTTGTGATGTTTTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAGCCAAGTACATGTTTTGTTTTTGGTATCTTACCGCTTGTAAATACCTTGTTCTTACACTGGCATTGCTGTTTATATACATTACTGCTGCTAGCTTAATTTGGACCAAATCTTTCCATAGACCTCTTGATCTTGATCATTCATC GTTTTGACTTCGTAATTATTATTTGAATTCCGTTTTCTATCAATTGCTTCAAACAGAGAGAGAGAGACGAAGCTTACCGAGCGAAAATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGATTTTGAGGAGCTACTATTTTCCCGTGTGGTTATTTAGCATCATTTGCATTCAGTACTTGCGATACCCTTGTGCTATTTTTGTGATGTTTTTGTGATGTTTTTGTGATGTTTTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAGCCAAGTACATGTTTTGTTTTTGGTATCTTACCGCTTGTAAATACCTTGTTCTTACACTGGCATTGCTGTTTATATACATTACTGCTGCTAGCTTAATTTGGACCAAATCTTTCCATAGACCTCTTGATCTTGATCATTCATC ATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTtGAGAAaTTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGA MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG*
BLAST of Cucsa.349300.1 vs. TrEMBL
Match: A0A0A0KDG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 8.2e-79 Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. TrEMBL
Match: A0A067GTW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032751mg PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 7.5e-64 Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. TrEMBL
Match: V4VHJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033047mg PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 7.5e-64 Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. TrEMBL
Match: W9RBP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 2.2e-63 Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. TrEMBL
Match: B9RFX0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 8.2e-63 Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. TAIR10
Match: AT5G13190.1 (AT5G13190.1 LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629)) HSP 1 Score: 221.9 bits (564), Expect = 2.4e-58 Identity = 96/133 (72.18%), Postives = 107/133 (80.45%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. NCBI nr
Match: gi|449445586|ref|XP_004140553.1| (PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus]) HSP 1 Score: 300.8 bits (769), Expect = 1.2e-78 Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. NCBI nr
Match: gi|659119896|ref|XP_008459901.1| (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]) HSP 1 Score: 293.5 bits (750), Expect = 1.9e-76 Identity = 131/134 (97.76%), Postives = 131/134 (97.76%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. NCBI nr
Match: gi|567892627|ref|XP_006438834.1| (hypothetical protein CICLE_v10033047mg [Citrus clementina]) HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63 Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. NCBI nr
Match: gi|703112225|ref|XP_010100062.1| (hypothetical protein L484_013174 [Morus notabilis]) HSP 1 Score: 249.6 bits (636), Expect = 3.1e-63 Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = 1
BLAST of Cucsa.349300.1 vs. NCBI nr
Match: gi|743819248|ref|XP_011020836.1| (PREDICTED: uncharacterized protein LOC105123069 [Populus euphratica]) HSP 1 Score: 248.4 bits (633), Expect = 6.9e-63 Identity = 109/133 (81.95%), Postives = 115/133 (86.47%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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