Cucsa.348570.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAGTTAAAAATTCGTCTTTTGTCGAGAGAGAGAGTTTTCCAATCGTCCGTAGGCTTCGCCTTTTCACCCTCAGTCGCCGGCGACAACAGAGATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGTTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGGTGACGCGTTCAATTCAGTGGTGTTTCTTACACTAATTCTTGATTCGGTTTTGAATTTACATCTTTATCACTGCATTTCTTCCGTTCTCGTAAATTAGCAGCATCTTATTGGATTTTGTTCGCTTGTTTTTTTTATTGAACAATTGATTGGTCGTCTTGTGGGTTGTTTTATTTGTGTATCTTTTTTGCTTGATTTGGATTTTGGATTTCTGGGTTACTTGATTATAGTCTGACGTGTGAAGTGTTGGTTTTAATTTCGATATTTTCAATCAATTTCTTAGTATTGTGGATAGAGTTTGTTCATATTAGTTCATATTTTGTTCAAAGAGACGATAGTGATGAGTTCAGTGATAGAGTTTAGGTCCTACTACTTTGATCGTATAGGAATTTGTTAGGGAAGATGGTTCCAGAAATTCTGATGTAATAACTCACTCTTTTTTCAAAAGATTACAAAATTGTTTCTATGGGAAGAAAAAAGTTCTCAACTTTTAAAAGGGATAGACTTATCTTGTTCCTCATGCAATTTGTCGATTGTGTTTTTCAGAAAACACGTATCGTGTCTTTCTGATAAGTCGTAATTTGAATGCAATTAGTGATTGTTAGTGCTATTCCTTTTGGCAACTTCTTTTTTTCGCAATGTCCTTTATTCACAAGTGGAAATGGCTTCATGACTTTCCCACACTATTTTGAGAAACAACTGTTTGTAATTTTAAAATAATGTTTTGTGAAAATATCTTCAACTGTTTTTAGAAAGTGGTAAACTTATTTTTTCTAGTTTGTTTTCACATACATCTATTTCTTTTAGTTAAGTTGAAGATATTAGACACAATCCTCATGCCCAGATTCGTACTGCAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGGTACGTCATAAACATGTTGATTTCTTCAAGGGGAATCAATGAAATCTTGTTTCTCCCCCAAAAATTTAATTATCTGACTATTCCATTTGTTTTTATTAACATATGACACTACTAAACTGCATGCTTGTACATCCCTTTGGTAGATTTGTCAATGTAAAACACATTAGTTCAAGAGATATAATTGTCACGGCTATGCATCAAAACAAGGTTTCAGTAAACAAGAGAAACTAACTCATCTTTAGAAAAGGATAATTTAAGGAATGTGCAACACTTTATCAATGCATATCACAACCCTATTGAAAGTGGGAGAGTTTAGAAATACTTGGCTCATCATTGAACTCTAGTGTACCCTATTCCATATTGAGTGTACATATCCATAGTATCATATTCTTTTATCAGTGTGTCAAACCTCCAGACAGATTCTCCAAATTTCCACACTCGATAGGAGACGATTACTTATTATAGTATTTTCCCTCTTCCATTTAGCTCTATACCACTCCATGGTGTTACAGCGACCACTGCTTTTTATCCTCATGAACTCCCCTTTTTGAGATGGAGTATTGTAGCATGCTTGCTCCTTTGGTATCTCGTGGGAAGTGTATCTCAAGAAGAATAGTGGGATATGTATCTCGAGAAGAATAGTAAGACTTTTAGGGGAGCTGAGATGTCCGTTACTTGGACTTCTTATAACTATTAGTTTAGTCTTATTCTTTTTCTTATTAGTGTCTATTCTGTAAGTTGTTAAGGAGTCCTTTTGGGAGGCTTGGTTTTTTTTGTCTCAATATGTTCTTTCATTTATCTTCACGAAAGCTTGGTTTCCAAAAATACCATTAAAAGTCCAAGAAACGTTCTTTCAAATCCTGCTAGTGAGCTCACACCAAATATTCCAGAAAAATGCTTTGTTGATGGCTGGATAAAGTCCTCTTATAACAAAAAGTATGCCCCCACAAGAACCAAAGCCAATATGTCATAATATTACCAGGGAGAAATGTCCGATATACATCTAGAATTTAGAGCTTCTCCAAGAGATTGAGTATTCAGTTCCACCCTTATTCAAATTCAGTACTCTTTTGTTGATTGTATTTCATAACTAATTTGCTTATTAACGATGAAATCCAATTCACTAAGTTCACTGACTGCAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGTAACTTCTACTTTTTCAAGTCACTTAGTTATAATAATAATCTCTAGAAGAATGTTTAGAGTGATGAGTTAGTCAGTGTACATATAACTAATCTTAGGAGTTGTAAAGCTTTGAGTTAAGCTGAGTTGAGTTTTGAAATCTAAAGTTAATAGGTCGGAGTTCGAGAGTTTGTGTTTGGAGTGTAGAGTTATAAAATGAAGTTTTTCGATAAATGTGCAAACTTCAATTATGAGTAGTTGATATAACATCAACTTATGAAGTCGATGGGCCAAGCACTCCTTTATATACGAAATGAATGAAGATTGTGTTTGAGGAGGTTGAGATGCTGAATATAGCGATATAGAATTTACTTTAGCTTAATGATAACCTCGATGTATAAAAACGTTTGATATTTTATTATTTTTTAAAACTTTTGCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCTCACCTTTTTCTTTTTTTTTTTAATTTTAAATTTTAGGTTACATCTCTTAATCAATGTAAAAAACTTGTTGAATTTGAATGAAACTATTATCAGCCAGAAAAAGAAGAAAGAAAGAAAAAGAATTGAGGTGAGTGAACACTGGATTTTGTGAATTTCAAGGTTAGCAGTGGAAATAGTTCTGATTTCCTTTTGTCTAAATCTTTTACTGGAGGAAGACACACCTTTCATCCGGGAAACCAATA GAAGTTAAAAATTCGTCTTTTGTCGAGAGAGAGAGTTTTCCAATCGTCCGTAGGCTTCGCCTTTTCACCCTCAGTCGCCGGCGACAACAGAGATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGTTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCTCACCTTTTTCtttttttttttaattttaaattttaGGTTACATCTCTTAATCAATGTAAAAAACTTGTTGAATTTGAATGAAACTATTATCAGCCAGAAAAAGAAGAAAGAAAGAAAAAGAATTGAGGTGAGTGAACACTGGATTTTGTGAATTTCAAGGTTAGCAGTGGAAATAGTTCTGATTTCCTTTTGTCTAAATCTTTTACTGGAGGAAGACACACCTTTCATCCGGGAAACCAATA ATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGTTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI*
BLAST of Cucsa.348570.1 vs. Swiss-Prot
Match: SEP15_PIG (15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2) HSP 1 Score: 97.1 bits (240), Expect = 2.1e-19 Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. Swiss-Prot
Match: SEP15_BOVIN (15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2) HSP 1 Score: 94.7 bits (234), Expect = 1.0e-18 Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. Swiss-Prot
Match: SEP15_HUMAN (15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3) HSP 1 Score: 94.0 bits (232), Expect = 1.7e-18 Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. Swiss-Prot
Match: SEP15_DANRE (15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2) HSP 1 Score: 92.8 bits (229), Expect = 3.9e-18 Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. Swiss-Prot
Match: SEP15_RAT (15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3) HSP 1 Score: 90.1 bits (222), Expect = 2.5e-17 Identity = 54/151 (35.76%), Postives = 81/151 (53.64%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. TrEMBL
Match: A0A0A0KA30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087180 PE=4 SV=1) HSP 1 Score: 347.8 bits (891), Expect = 7.5e-93 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. TrEMBL
Match: B9IQU6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12540g PE=4 SV=2) HSP 1 Score: 263.1 bits (671), Expect = 2.4e-67 Identity = 123/149 (82.55%), Postives = 139/149 (93.29%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. TrEMBL
Match: A0A067LJ32_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05711 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 2.3e-65 Identity = 123/155 (79.35%), Postives = 139/155 (89.68%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. TrEMBL
Match: A9PBN4_POPTR (Selenoprotein OS=Populus trichocarpa GN=POPTR_0013s13060g PE=2 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64 Identity = 117/142 (82.39%), Postives = 133/142 (93.66%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. TrEMBL
Match: M5Y5K8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012718mg PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 1.9e-64 Identity = 121/155 (78.06%), Postives = 138/155 (89.03%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. TAIR10
Match: AT1G05720.1 (AT1G05720.1 selenoprotein family protein) HSP 1 Score: 247.7 bits (631), Expect = 5.3e-66 Identity = 114/159 (71.70%), Postives = 144/159 (90.57%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. NCBI nr
Match: gi|449445674|ref|XP_004140597.1| (PREDICTED: 15 kDa selenoprotein [Cucumis sativus]) HSP 1 Score: 347.8 bits (891), Expect = 1.1e-92 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. NCBI nr
Match: gi|659120099|ref|XP_008460012.1| (PREDICTED: 15 kDa selenoprotein [Cucumis melo]) HSP 1 Score: 332.8 bits (852), Expect = 3.6e-88 Identity = 162/171 (94.74%), Postives = 165/171 (96.49%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. NCBI nr
Match: gi|566242499|ref|XP_002326051.2| (hypothetical protein POPTR_0019s12540g [Populus trichocarpa]) HSP 1 Score: 263.1 bits (671), Expect = 3.5e-67 Identity = 123/149 (82.55%), Postives = 139/149 (93.29%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. NCBI nr
Match: gi|743917732|ref|XP_011002858.1| (PREDICTED: 15 kDa selenoprotein-like [Populus euphratica]) HSP 1 Score: 260.0 bits (663), Expect = 2.9e-66 Identity = 121/149 (81.21%), Postives = 138/149 (92.62%), Query Frame = 1
BLAST of Cucsa.348570.1 vs. NCBI nr
Match: gi|645231661|ref|XP_008222499.1| (PREDICTED: 15 kDa selenoprotein [Prunus mume]) HSP 1 Score: 256.9 bits (655), Expect = 2.5e-65 Identity = 123/155 (79.35%), Postives = 139/155 (89.68%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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