Cucsa.339690.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.339690.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Calcium homeostasis regulator CHoR1
Location	scaffold03356 : 2250253 .. 2252521 (+)
Sequence length	1513

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGAGGGTGAGAATGAACAACAGTTGAGAGTCGCAGCCATGTCCGTGACCTCAACTAGCACTACTTCATCTTCTCTCCACTCCAATCCCAAATTCTTCTTCCTCTCTAACCCCATTTCTCCTTCTCCCCTCTTTCTCCGCAAACTTTATGGCCGACGCCGGAACCCGAATTCGGCCGGCGCCTTCTCCATCAAGGCTTACATGGAGAGTCCCAACTCTCTGTCCGGTTTTGCAAGTAAGGTGATCGGATCTCTGCCTGTGGTCGGACTGATCGCGAGAATTCTGAGCGATGAAGGCGGCGTCGGCACTGACATTATCGATTTTGCGGAGTTTCGTAGACGAGTTGGGAAGAAATGTACGATTATGGAGTCTAAAGCTTTCTATGAATTTCAAGAAAGAAAAGGCAAGGTAAATGTGTATCTTTATTTATGTTTATAATATCCTTTTTAAATTATACTTCATTAACTACTCTACTTTTtCTTTTtCAAAATAATAATTACTCTAGTTTTTTAATTAAAAAAaCAAGTACTTATGATAGGTAAAATTTGTTTtAAAACTTTTtAAATGTTCAGTAATTAGTAATATCTTTTTtATATTCCATTGATTCCACAGGAGAACTAAATCCTCTTTTTAACTTATTTGGAGCAAGAACTAAGTTAATGATTAAAGTTGCAAAACTTTCCAAGGTTCAAGTTAAGCGTAATTTGATGAAATTGAGAAGTTATATAACCTAACAAGTTTAGAGGTGAAATAGGTTGTATTGTACTCGTAAGTGCAATGGTGTATTTATTAATTTAAATATATTGCAAGTTTAAGATTAGAATTACAATAATGCTGCTTACTAAATCAATCAAACCAAGAAAGGTAAATCATAATGATTTGTGTTGAAGTAGAATAATTGATTGTGGTAGGCTGGAGAGCCATTGTATGTTCTATTGTGCTGCTGGCTAGCAGCCGTGGGAGCTGGTTTGCTTAAATCAGAGGAAATTTTGGAAGGAGTAGCAAGGCTTAGGATTTCAAATGATATTGAGTTTGAAGAAGAGACTTTCCTTGCTATGATGAATGAGGCTAGAGAGGTTTGTTACTCATATCATACATATATTTTTCCACTTTAAAGTCTCATTTTGCCTAAAAGAATAAAACGATGTTCATCTATGTATATAGAAACGAGAAAAaCTAAAAGCGGCTGTTCCGAACATTCCGATGGAGGTTCGAATCGAGAAAGCACTTGATGCCATTTACGTTTGTTCATTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTTTTAGTCATCATGTTGAGTGCTGTTTTTCCATCTGTTGGGGAAATTGAGATTCAGAGGATTTTGAAAGAGAAAGCAATTAGAATTGCTGAAGGTAAGGACACTGCCATTGTTCCAGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCCCAAATGAAGGACCTCCAATTTCTCCAAGAGAATAATGAAACTTAAGAGTCATAATTTAGTTTAGTTTGTTTGGTTGTTTTGTCAATTTGTAAGAGTTTGAATCTTTTGCTCCACAGTTTTCTAAAGTTGGCTGTTAATTATGGTATCTATATGATTCGAGATTAGAGGAGTGAGTTTAATTAAAATCCAATTAATATAGTTTGTTCATAAATCTAAAACGTTCTTTTTGGACATTGTTTGAGATGAGATACAATATAGCCGTATTCGTCAATCCAAACATAATTTAAAAGATAATGCACTAATCATCATCTCATTGATCATCTACCCCGATATCTGTTAAACTAAAGAAAAGAGAAACCAATCTAGTTGAATTACACTATATCATTGTTGGTTTCTAACAATTCAGTTCAATTTTGATCCATTTCATTGGTTTCGATATGTTCAGTTGAGCAATTGGTTCTATCAATTCAATTCCTTTTTAGGCAAGGAAGGGAGAAAaAAAAACTTTGATTCATCCTCAAAGATATCCATTTTAGATGGAATTACATTATGATGAGATACATACAGAAAAAAaGACTCACAAAGACGCTGATTTTGAAGGCACAAGTGAACTCCCACAGAAGCCAATTTATTTTGGAAACTAATTGTTGACTAAGTGGGAGAGAGAGGGAGGACACCATGGCAGATAAGACAAAACCTAAAGCACTTACCGGTATTGAGGTGCAAGTTGTCCTTCCTTGACGATGTAGTTTTGAGCAGGGAATTCTTCTCCTTTGAAGTACCTTTCAAGCATGTCCTTAACTCCGGCAGCATATCGCAACTGCATTGT

mRNA sequence

CGAGAGGGTGAGAATGAACAACAGTTGAGAGTCGCAGCCATGTCCGTGACCTCAACTAGCACTACTTCATCTTCTCTCCACTCCAATCCCAAATTCTTCTTCCTCTCTAACCCCATTTCTCCTTCTCCCCTCTTTCTCCGCAAACTTTATGGCCGACGCCGGAACCCGAATTCGGCCGGCGCCTTCTCCATCAAGGCTTACATGGAGAGTCCCAACTCTCTGTCCGGTTTTGCAAGTAAGGTGATCGGATCTCTGCCTGTGGTCGGACTGATCGCGAGAATTCTGAGCGATGAAGGCGGCGTCGGCACTGACATTATCGATTTTGCGGAGTTTCGTAGACGAGTTGGGAAGAAATGTACGATTATGGAGTCTAAAGCTTTCTATGAATTTCAAGAAAGAAAAGGCAAGAAACGAGAAAAACTAAAAGCGGCTGTTCCGAACATTCCGATGGAGGTTCGAATCGAGAAAGCACTTGATGCCATTTACGTTTGTTCATTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTTTTAGTCATCATGTTGAGTGCTGTTTTTCCATCTGTTGGGGAAATTGAGATTCAGAGGATTTTGAAAGAGAAAGCAATTAGAATTGCTGAAGGTAAGGACACTGCCATTGTTCCAGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCCCAAATGAAGGACCTCCAATTTCTCCAAGAGAATAATGAAACTTAAGAGTCATAATTTAGTTTAGTTTGTTTGGTTGTTTTGTCAATTTGTAAGAGTTTGAATCTTTTGCTCCACAGTTTTCTAAAGTTGGCTGTTAATTATGGTATCTATATGATTCGAGATTAGAGGAGTGAGTTTAATTAAAATCCAATTAATATAGTTTGTTCATAAATCTAAAACGTTCTTTTTGGACATTGTTTGAGATGAGATACAATATAGCCGTATTCGTCAATCCAAACATAATTTAAAAGATAATGCACTAATCATCATCTCATTGATCATCTACCCCGATATCTGTTAAACTAAAGAAAAGAGAAACCAATCTAGTTGAATTACACTATATCATTGTTGGTTTCTAACAATTCAGTTCAATTTTGATCCATTTCATTGGTTTCGATATGTTCAGTTGAGCAATTGGTTCTATCAATTCAATTCCTTTTTAGGCAAGGAAGGGAGAAAAAAAAACTTTGATTCATCCTCAAAGATATCCATTTTAGATGGAATTACATTATGATGAGATACATACAGAAAAAAAGACTCACAAAGACGCTGATTTTGAAGGCACAAGTGAACTCCCACAGAAGCCAATTTATTTTGGAAACTAATTGTTGACTAAGTGGGAGAGAGAGGGAGGACACCATGGCAGATAAGACAAAACCTAAAGCACTTACCGGTATTGAGGTGCAAGTTGTCCTTCCTTGACGATGTAGTTTTGAGCAGGGAATTCTTCTCCTTTGAAGTACCTTTCAAGCATGTCCTTAACTCCGGCAGCATATCGCAACTGCATTGT

Coding sequence (CDS)

ATGTCCGTGACCTCAACTAGCACTACTTCATCTTCTCTCCACTCCAATCCCAAATTCTTCTTCCTCTCTAACCCCATTTCTCCTTCTCCCCTCTTTCTCCGCAAACTTTATGGCCGACGCCGGAACCCGAATTCGGCCGGCGCCTTCTCCATCAAGGCTTACATGGAGAGTCCCAACTCTCTGTCCGGTTTTGCAAGTAAGGTGATCGGATCTCTGCCTGTGGTCGGACTGATCGCGAGAATTCTGAGCGATGAAGGCGGCGTCGGCACTGACATTATCGATTTTGCGGAGTTTCGTAGACGAGTTGGGAAGAAATGTACGATTATGGAGTCTAAAGCTTTCTATGAATTTCAAGAAAGAAAAGGCAAGAAACGAGAAAAaCTAAAAGCGGCTGTTCCGAACATTCCGATGGAGGTTCGAATCGAGAAAGCACTTGATGCCATTTACGTTTGTTCATTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTTTTAGTCATCATGTTGAGTGCTGTTTTTCCATCTGTTGGGGAAATTGAGATTCAGAGGATTTTGAAAGAGAAAGCAATTAGAATTGCTGAAGGTAAGGACACTGCCATTGTTCCAGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCCCAAATGAAGGACCTCCAATTTCTCCAAGAGAATAATGAAACTTAA

Protein sequence

MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERKGKKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET*

Homology

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BLAST of Cucsa.339690.2 vs. TrEMBL
Match: A0A0A0LCC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836490 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-74
Identity = 176/285 (61.75%), Postives = 190/285 (66.67%), Query Frame = 1


Query: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 60
           MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 60

Query: 61  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120
           LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 121 KGKKREKLKAAVPNIPMEV-----RIEKALDAIYVCSFGRDPIEEDDEKLLVIM------ 180
           KGK  E L   +      V     + E+ L+ +       D IE ++E  L +M      
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISND-IEFEEETFLAMMNEAREK 180

Query: 181 ---LSAVFPSVG-EIEIQRIL----------------KEKAIRIAEG------------- 230
              L A  P++  E+ I++ L                 EK + I                
Sbjct: 181 REKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQR 240

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BLAST of Cucsa.339690.2 vs. TrEMBL
Match: W9S8Y3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008427 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.0e-34
Identity = 112/295 (37.97%), Postives = 153/295 (51.86%), Query Frame = 1


Query: 3   VTSTST-----TSSSLHSNPKFFFLSNPISPSPLFLRKLYGR--------RRNPNSAGAF 62
           VTSTS+     TSSSL S      L  PISPS LFLR +YG          +   +    
Sbjct: 4   VTSTSSQIFNPTSSSLKST----LLLKPISPSLLFLRHIYGNCSWRPKLAEKQYCNGVVL 63

Query: 63  SIKAYMESPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIM 122
            +++YME+PNS S FA+KVIG+LPV+GL+ RI+S+EGGVGTDIIDFAEFRRRVG KCT  
Sbjct: 64  PVRSYMENPNSFSSFANKVIGALPVIGLVVRIISNEGGVGTDIIDFAEFRRRVGNKCTPS 123

Query: 123 ESKAFYEFQERKGKKREKLKAAVPNIPMEV-----RIEKALDAIYVCSFGRDPIEEDDEK 182
           +S+AFYEFQ+R+G+  + L   +      V     + E+ L+         D IE ++E 
Sbjct: 124 DSRAFYEFQDRRGRAGDPLYVLICCWLAAVGAGLLKSEEILEGAARLRISND-IEFEEET 183

Query: 183 LLVIM---------LSAVFPSVG-EIEIQRILKEKAI------RIAEGKDTAI------- 230
            L +M         L A  PS+  E+ I++ L+   +      RI E  +  +       
Sbjct: 184 FLAMMNEAREKRAKLKAAPPSIPMEVRIEKALEAIYVCCFGKDRIEEEDENLLNVMLSAV 243

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BLAST of Cucsa.339690.2 vs. TrEMBL
Match: V4U1H3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016148mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-33
Identity = 106/270 (39.26%), Postives = 142/270 (52.59%), Query Frame = 1


Query: 16  NPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNSLSGFASKVIGSLPVV 75
           +P         S +P  LRKL     N    G  S+KAY+E+ NS+S FA+KVIGSLPV+
Sbjct: 23  SPSLILFPQIQSSNPTRLRKLPSSSSN---GGVLSVKAYIENQNSISNFANKVIGSLPVI 82

Query: 76  GLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERKGKKREKLKAAVPNI 135
           GL ARILSDEGGVG DIIDFAEFRRRVG KC+I +SKAFY+FQER+G+  + L   +   
Sbjct: 83  GLFARILSDEGGVGGDIIDFAEFRRRVGNKCSINDSKAFYDFQERRGRAGDPLYVLICCW 142

Query: 136 PMEV-----RIEKALDAIYVCSFGRDPIEEDDEKLLVIM---------LSAVFPSVG--- 195
              V     + E+ L+         D +E ++E  L  M         L+AV P++    
Sbjct: 143 LAAVGAGLLKSEEILEGAARLRVSND-VEFEEETFLAAMNEAKERRAKLNAVTPTIPMAI 202

Query: 196 -------------------EIEIQRILKE--KAI------------------RIAEGKDT 230
                              E E +R+L    +A+                  ++AEG D 
Sbjct: 203 RAEKALEAIYVCCFGKELVEEEDERLLVTILRAVFPTVEQPEIERIVKDKARKVAEGSDE 262

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BLAST of Cucsa.339690.2 vs. TrEMBL
Match: M4CSF8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-32
Identity = 103/282 (36.52%), Postives = 147/282 (52.13%), Query Frame = 1


Query: 3   VTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNSLS 62
           VT  ST+S  +  +P FF L   I  +     +L           A SI+AY+E PNS+S
Sbjct: 4   VTPISTSSHQI--SPSFFHLRLRIPATSPASSRLIKHGDGGGGGIALSIRAYIEKPNSIS 63

Query: 63  GFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERKG 122
            FA+ VIGSLPV+GL+ARILSDEGGVG D++DFAEFR+RVG KC   +S+AFYEFQ+R+G
Sbjct: 64  SFANTVIGSLPVIGLLARILSDEGGVGRDLVDFAEFRKRVGNKCAPSDSRAFYEFQQRRG 123

Query: 123 KKREKLKAAVPNIPMEV-----RIEKALDAIYVCSFGRDPIEEDDEKLLVIM-------- 182
           K  E L   +      V     + E+ L+ +   S   D +E +++  + +M        
Sbjct: 124 KAGEPLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISND-LEFEEQNFIALMTEARQRRA 183

Query: 183 -LSAVFPSVG-EIEIQRIL----------------------------------------- 228
            L+   P++  E+ +++ L                                         
Sbjct: 184 KLNVAAPTIPMELRVEKALEGIYACCFRRGVIEEEDEQLLLVMLTAVFPSVDKSEIERII 243

[Close]

BLAST of Cucsa.339690.2 vs. TrEMBL
Match: A0A078CB04_BRANA (BnaC08g26090D protein OS=Brassica napus GN=BnaC08g26090D PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 105/283 (37.10%), Postives = 150/283 (53.00%), Query Frame = 1


Query: 3   VTSTSTTSSSLHSNPKFFFLSNPI-SPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNSL 62
           V  T  +SS+   +P FF L   I S SP   R +  +  +     A SI+AY+E PNS+
Sbjct: 2   VIVTPISSSAHQISPSFFHLRLRIPSTSPASSRLI--KHGDGGGGIALSIRAYIEKPNSI 61

Query: 63  SGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERK 122
           S FA+ VIGSLPVVGL+ARILSDEGGVG D++DFAEFR+RVG KC   +S+AFYEFQ+R+
Sbjct: 62  SSFANTVIGSLPVVGLLARILSDEGGVGRDLVDFAEFRKRVGNKCAPSDSRAFYEFQQRR 121

Query: 123 GKKREKLKAAVPNIPMEV-----RIEKALDAIYVCSFGRDPIEEDDEKLLVIM------- 182
           GK  E L   +      V     + E+ L+ +   S   D +E +++  + +M       
Sbjct: 122 GKAGEPLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISND-LEFEEQNFIALMTEARQRR 181

Query: 183 --LSAVFPSVG-EIEIQRIL---------------------------------------- 228
             L+   P++  E+ +++ L                                        
Sbjct: 182 AKLNVAAPTIPMELRVEKTLEGIYACCFRRGVIEEEDEQLLLVMLTAVFPSVEKSEIERI 241

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BLAST of Cucsa.339690.2 vs. TAIR10
Match: AT3G55250.1 (AT3G55250.1 unknown protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.9e-29
Identity = 76/171 (44.44%), Postives = 104/171 (60.82%), Query Frame = 1


Query: 10  SSSLHS-NPKFFFLS--NPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNSLSGFAS 69
           S+S H  +P FF L   NP + S          R   +   A SI+AY+E PNS S FA+
Sbjct: 8   STSFHQISPSFFHLRLRNPSTTS--------SSRPKLDGGFALSIRAYIEKPNSFSTFAN 67

Query: 70  KVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERKGKKRE 129
           KVIGSLPV+GL+ARI+SDEGGVG D++DFAEFR+RVG KCT  +S+AFYEFQ+R+GK  E
Sbjct: 68  KVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTPDDSRAFYEFQQRRGKAGE 127

Query: 130 KLKAAVPNIPMEV-----RIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSA 173
            L   +      V     + E+ L+ +   S   D +E +++  + +M  A
Sbjct: 128 PLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISND-LEFEEQNFIALMTEA 169

HSP 2 Score: 113.2 bits (282), Expect = 2.1e-25
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 110 ESKAFYEFQERKGKKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIM 169
           E + F        ++R KL    P IPME+R+EKAL+ IY C F R  IEE+DEKLL +M
Sbjct: 158 EEQNFIALMTEARQRRAKLNIDAPTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVM 217

Query: 170 LSAVFPSVGEIEIQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENN 228
           L AVFPSV + EI+RI+KEKA R+ EG +   V   + L KEAI  QMKDL+FLQ+ N
Sbjct: 218 LIAVFPSVEKSEIERIIKEKATRVEEGGEEENVMAKR-LPKEAIQMQMKDLEFLQQQN 274

[Close]

BLAST of Cucsa.339690.2 vs. NCBI nr
Match: gi|449446656|ref|XP_004141087.1| (PREDICTED: uncharacterized protein LOC101213103 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.8e-74
Identity = 176/285 (61.75%), Postives = 190/285 (66.67%), Query Frame = 1


Query: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 60
           MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 60

Query: 61  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120
           LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 121 KGKKREKLKAAVPNIPMEV-----RIEKALDAIYVCSFGRDPIEEDDEKLLVIM------ 180
           KGK  E L   +      V     + E+ L+ +       D IE ++E  L +M      
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISND-IEFEEETFLAMMNEAREK 180

Query: 181 ---LSAVFPSVG-EIEIQRIL----------------KEKAIRIAEG------------- 230
              L A  P++  E+ I++ L                 EK + I                
Sbjct: 181 REKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQR 240

[Close]

BLAST of Cucsa.339690.2 vs. NCBI nr
Match: gi|659085625|ref|XP_008443515.1| (PREDICTED: uncharacterized protein LOC103487086 [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 1.0e-66
Identity = 162/285 (56.84%), Postives = 184/285 (64.56%), Query Frame = 1


Query: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 60
           MSVTSTSTTSSSLHSNPK FFLSNPISPS LFL +LYGRRR+ NSAGAFSIKAYME+PNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLYGRRRSSNSAGAFSIKAYMENPNS 60

Query: 61  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120
           LSGFASKVIGSLPVVGLIARI+SDEGGVG+D+IDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 121 KGKKREKLKAAVPNIPMEV-----RIEKALDAIYVCSFGRDPIEEDDEKLLVIM------ 180
           KGK  E L   +      V     + E+ L+ +       D IE ++E  + +M      
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISND-IEFEEETFIAMMNEAREK 180

Query: 181 ---LSAVFPSVG-EIEIQRIL----------------KEKAIRIAEG------------- 230
              L A  P++  E+ +++ L                 EK + I                
Sbjct: 181 REKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQR 240

[Close]

BLAST of Cucsa.339690.2 vs. NCBI nr
Match: gi|923796789|ref|XP_013686049.1| (PREDICTED: uncharacterized protein LOC106390184 isoform X2 [Brassica napus])

HSP 1 Score: 239.6 bits (610), Expect = 5.5e-60
Identity = 126/220 (57.27%), Postives = 165/220 (75.00%), Query Frame = 1


Query: 10  SSSLHSNPKFFFLSNPI-SPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNSLSGFASKV 69
           SS+   +P FF L   I + SP   R +  +  +     A SI+AY+E PNS+S FA+ V
Sbjct: 5   SSAHQISPSFFHLRLRIPATSPASSRLI--KHGDGGGGIALSIRAYIEKPNSISSFANTV 64

Query: 70  IGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERKGKKREKL 129
           IGSLPVVGL+ARILSDEGGVG D++DFAEFR+RVG KC   +S+AFYEFQ+R+GK+R KL
Sbjct: 65  IGSLPVVGLLARILSDEGGVGRDLVDFAEFRKRVGNKCAPSDSRAFYEFQQRRGKRRAKL 124

Query: 130 KAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRILKE 189
             A P IPME+R+EK L+ IY C F R  IEE+DE+LL++ML+AVFPSV + EI+RI+KE
Sbjct: 125 NVAAPTIPMELRVEKTLEGIYACCFRRGVIEEEDEQLLLVMLTAVFPSVEKSEIERIIKE 184

Query: 190 KAIRIAE-GKDTAIVPEPQPLSKEAILAQMKDLQFLQENN 228
           KA+R+AE G++  ++ EP+ L KEAI  QMKDL+FLQ+ N
Sbjct: 185 KAMRVAEGGEEENLMAEPKRLPKEAIQMQMKDLEFLQQQN 222

[Close]

BLAST of Cucsa.339690.2 vs. NCBI nr
Match: gi|769811290|ref|XP_011623625.1| (PREDICTED: uncharacterized protein LOC18434829 isoform X2 [Amborella trichopoda])

HSP 1 Score: 231.5 bits (589), Expect = 1.5e-57
Identity = 128/241 (53.11%), Postives = 171/241 (70.95%), Query Frame = 1


Query: 2   SVTSTSTTSSSLHSNPKFFFLSNPIS-------PSPLFLRK------LYGRRRNPNSAGA 61
           S T+ +T+S S HS+     L  P+S       P+P FL K      LY RR+  N    
Sbjct: 5   SSTTLNTSSLSTHSH-HLKNLKKPLSKLKSQFLPNPGFLLKSSLSLELY-RRKWRNRGNG 64

Query: 62  FSIKAYMESPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTI 121
            +I AYME PNS  GF   V+GSLPVVGL+ARILSDEGGVG D++DFAEFRRRVGK+C+ 
Sbjct: 65  LAITAYMERPNSFGGFVRNVVGSLPVVGLLARILSDEGGVGGDLVDFAEFRRRVGKRCSN 124

Query: 122 MESKAFYEFQERKGKKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVI 181
           ++S+AFY+F+ER+G++R+KLK+A P IPM +R EKAL+ IYVC FG+D IEE+DEKLL I
Sbjct: 125 IDSQAFYDFKERRGRRRDKLKSASPEIPMALRAEKALETIYVCCFGKDLIEEEDEKLLCI 184

Query: 182 MLSAVFPSVGEIEIQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNE 230
           ML+AVF +VG+ EI R++  KA + AE K+     + Q LS EA   Q+K+L+FL++N+E
Sbjct: 185 MLNAVFQTVGQEEINRMVNLKAKQAAENKEQEPSEKQQTLSNEARQLQLKELEFLKQNSE 243

[Close]

BLAST of Cucsa.339690.2 vs. NCBI nr
Match: gi|729305451|ref|XP_010528261.1| (PREDICTED: uncharacterized protein LOC104805398 [Tarenaya hassleriana])

HSP 1 Score: 161.0 bits (406), Expect = 2.5e-36
Identity = 111/267 (41.57%), Postives = 150/267 (56.18%), Query Frame = 1


Query: 26  ISPSPLFLRK-------LYGRRRNPNSAG----AFSIKAYMESPNSLSGFASKVIGSLPV 85
           ISPS L LR+       + GRRR P S G     FS++AYMESPNS+S FASKVIGSLPV
Sbjct: 14  ISPSLLHLRRRIPAASPVSGRRRWPVSGGRGGFVFSVRAYMESPNSISSFASKVIGSLPV 73

Query: 86  VGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERKGKKREKLKAAVPN 145
           +GL+ARILSDEGGVG+DIIDFAEFRRRVGKKCT+ +S+AFYEFQER+GK  E L   +  
Sbjct: 74  IGLVARILSDEGGVGSDIIDFAEFRRRVGKKCTVDDSRAFYEFQERRGKAGEPLYVLLCC 133

Query: 146 IPMEV-----RIEKALDAIYVCSFGRDPIEEDDEKLLVIM---------LSAVFPSVG-E 205
               V     + E+ L+ +   S   D +E +++  + +M         L+   P +  E
Sbjct: 134 WVTAVGAGLLKSEEILEGVARLSISND-LEFEEQNFIALMNEARQRRAKLNVAAPKIPME 193

Query: 206 IEIQRILK----------------EKAIRI--------AEGKDT---------------- 226
           + +++ L+                EK +++         E  +                 
Sbjct: 194 LRVEKALEAIYVCCFGTGLIEEEDEKLLKVMLSSVFLSVEQSEIQRIVKEKATRVEEGGE 253

The following BLAST results are available for this feature:

BLAST of Cucsa.339690.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCC2_CUCSA	1.2e-74	61.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G836490 PE=4 SV=1	[more]
W9S8Y3_9ROSA	8.0e-34	37.97	Uncharacterized protein OS=Morus notabilis GN=L484_008427 PE=4 SV=1	[more]
V4U1H3_9ROSI	1.4e-33	39.26	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016148mg PE=4 SV=1	[more]
M4CSF8_BRARP	1.5e-32	36.52	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078CB04_BRANA	2.0e-32	37.10	BnaC08g26090D protein OS=Brassica napus GN=BnaC08g26090D PE=4 SV=1	[more]

BLAST of Cucsa.339690.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55250.1	6.9e-29	44.44	unknown protein	[more]

BLAST of Cucsa.339690.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446656\|ref\|XP_004141087.1\|	1.8e-74	61.75	PREDICTED: uncharacterized protein LOC101213103 [Cucumis sativus]	[more]
gi\|659085625\|ref\|XP_008443515.1\|	1.0e-66	56.84	PREDICTED: uncharacterized protein LOC103487086 [Cucumis melo]	[more]
gi\|923796789\|ref\|XP_013686049.1\|	5.5e-60	57.27	PREDICTED: uncharacterized protein LOC106390184 isoform X2 [Brassica napus]	[more]
gi\|769811290\|ref\|XP_011623625.1\|	1.5e-57	53.11	PREDICTED: uncharacterized protein LOC18434829 isoform X2 [Amborella trichopoda]	[more]
gi\|729305451\|ref\|XP_010528261.1\|	2.5e-36	41.57	PREDICTED: uncharacterized protein LOC104805398 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.339680	Cucsa.339680	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.339690.2	Cucsa.339690.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.339690.2.five_prime_UTR.1	Cucsa.339690.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.339690.2.CDS.1	Cucsa.339690.2.CDS.1	CDS
Cucsa.339690.2.CDS.2	Cucsa.339690.2.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.339690.2.three_prime_UTR.1	Cucsa.339690.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36770	FAMILY NOT NAMED	coord: 39..229 score: 2.7