Cucsa.302660.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.302660.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Homeobox protein knotted-1, putative
Location	scaffold02951 : 765801 .. 769824 (+)
Sequence length	1461

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTTTCTTTCTTTATTTCTTCCTTCTTCTTCTTCCCTTCCTTCCTTTTCTCTGTTTGTAAAATTTTCTGAAATTCTCAGACCTGGTGCAGAAAGTTTTGTGTCTCGGATCCCTATATACTCTTCTCTCTCTTTCTTCTTCATTTCACACCATTAACGAGAAAACTGACTCTTCTCTATCAACATATTCATTCAAAACTAAATCCCAACAAACCcTTTTTtttCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATCACCAATTTCACTATTTGGGCTCACTCATTTCTTCTTTTTTCCTTCTTTACTTTCTAATTTACCTTTTTCTACACAACCCCTTTTTGCTTTTTTCTGCTAATTTTAACTTGGGTTTTtCgAGGGGTTCATTTGAAATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCAGGTGGGTCTAGTGGTGGCTTAAGCGGCGACGTTtCGGTTTCCGGCGAGGGAGTTCATAACAGTCAACTGAAAGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAGcTTCCGATGATCGATGCCCAGCTTTCTCAATCCCACCATATTTTGCGCTCTTATGCTTCTTCTCAACAGCATCACCAAAATGCTCATTCCTTAACGCCTCACGAGCGACAAGAGCTTGACAATTTTCTGGTGATTTTTCTTTCTTTATTTATTTTAAAGAAAAGATTTAGTCGTATTTTGGAAAGTGGGTTGAACTTTGTTTTTtAATTTATGATGGGGTTTCTTTTCTTTTCTTTTCTTTTTTCAGGCACAGTATATGATCGTTTTGTGTTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTTGAAGCTGTTATGGCTTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGTATGTACATCTAACTATCTCATCTCAATTCTTAACAAAAATCCCTTTAAAACAAGAAAAaCAAAGATAAACCCATGATTTATCATCAGTTTTGAATGTGCATAAAAGTCTCGAAAATGTTACAGCATGAATATGTGCATGGTTTCTTTGTGTTATGAGTGTATAGAGATGTTAAAACAAAGGGGGgTTTTGTTTtGGTTTGAATTCGGGTCCAAATGAGGGTAAAAAAaCAAACACCGGAGGATTTTTTGAAAGGGGTTTTTTtGTTTTGGGGGgTTTGAGGGATGAGGATTATGGTGAAAAGCAGCCATGGAAGTGGGTGCAAAAGAGGTCCCTACTTGTGAATACCAAGATTGTAGTTGGGAAAAGGATTGGTCTGTTGGGTTCGGTGAGGGTACCACCAATAGGGGACACCAACAGATAAGGTTGCTTGCCCCTGGCAATACTTGCGTTCCACTGTAAACAATAATAATATTCTCCCTATTATTATATTTCTTCATCTTTTTGCTTTGTAAAGATAGTACATGAACCTAGCTAGCTACTTCTTTTTCCTCTCTCTTTTTTCTTTCTATATATAAAAATAGACTAAAAGAGCTACACTTATCATATATGATTACATTAATCACCAACTGATCATTTTTAATCATTCAAGTGACCTAATATTTTTTtAGGATATGGATATACCCAACGACAAAGCTGTTATGTTTTTGTAAACTTAACTTGCAAATTTGGCTATGAGTTAGAAAGATTTAGAACTTATTGTATGTGGTTTATAAATAGAATTTAGTTCATTCTCACAGTTTGATAAAGTCCTCATGTTTAGTTTAACCGTGCTTTATTGTTCTAGTGAGATATTCTTATACACCACCTGATCCTACGGTGCTTTAGTATTTTATTAAAAGAAATCACTAATCCTAAGTTGGGACTATTAATGAGGTTTtATTTTTTtAATTTTATCACAACATAGAGACTAAATAAGATATTTtATTTtAGTTTTTTtTTtAAaTAAAAAAaGAGAAAAAAAAaaCCTCTTTCATTGGTGAGTGAGTGACCTTTCTAGTTATATGATTTAACAAAACAATCTGGCGAATGAAAGGGTTACCACTCAAGCAGTTGATTGGATGGGTTAAAGAAACTAGGCATTTTATCATAAAGTAATCTGTTGCTTATTGATTGGGTTTGCCAGTTTTAGACCTGCCCTCCTATAACTACAACTACAATGGTCCCTATTCTCAATCTCCATACCTCCATGAAGTTCATGATCAGTTATTCTGTCTGTTTTAAATCATCTCTATTTTGAACCCTAGCATTGAGAATGCATAGAAACTATTCATTACTGCGTCTGCCAATGGATGCTGCTGAGGACCTAAGGGCTGTGGTGTAGGGTCTTAAATACCAATGCAAGCTTTTATATTAAGGACCCTAGGCCGCCTAAAGGGCATTGGAGGCTCATCCTGACAGTATTTAACTAAATGCTGCACTTTATGCGGCTTTTTTGGTCTGTTAAATTTGGATATGTTTAAAACTAAATAAGACACCAAGATTTGGTAACTGAACAAGTCAAACTATTTATTATTATCATTCAAAATGTTGACATTAATGCCTTCTTTTTGAGTTGGAGATTCAAATTCTATCTCCTTTATTTtAAAAATCTACTGTGCAAGAAAGTTAAAAGTGCTTTGTTTAAATTAAATTCAGCTGGATTTTCTTTATTCTACTCTGAACTTTTACAAGGACTAGTTGCTAAAAGTACATAAAAGTATCTTATTCTACAAACTTCGGGTGGTTTTGAATTCTCACACCTTTAATTTTATTTATTGTTTTGGTAGGAGAAAAAGTCAAAGATATGTTGAAATAACAAATAACATGTGGGTTTAATGTCATATCAAGTCATGTAGGAGAAAAGGTTGTTAAAATATAATGAGATTTTAAGTACAGTTAGTTGATGATGGAAGTGGAACCGTCCTTGTTATTTTCTAATGGAAAAATATGATTGCTACAATTATTGACACCGCCAAAGTAGATTAGACCTTGCTTCTTTAGTTGCTGATATTAACTCTGGTCAAAGTTTGGTGTCTTGGATATTTGAAAGGCATTTTCCATTACCAAACATGGAGAGACATTAAAGGTTGAAGTGCCCTTTACCAACTTCGTTTGCTATTTATCATGTTCCGTAGGAGTAAGCCTTGGTGAAGGAACCGGTGCAACAATGTCGGACGACGAAGACGACATTCCGATGGACTTTTCGCTCGATCAATCTGGAGCCGACGCACACGACATGATGGGATTCGGACCACTGCTACCAACTGAATCCGAAAGGTCGCTGATGGAGAGGGTCCGCCAAGAACTGAAGATTGAGCTGAAACAGGTTCCCTTTTCATGATTAAAAAAGAACTTTCCCATTACATACATTGCAGATTAAAAGGGAAAGACAAAGAACTAATTTATATGAACAAATTTGTGGTGTTGGAGATGAACCTGATTTGGAGTCTAAAATGTGGTGGTGTGTTGCAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAGAGAAGGGCAGGGAAGTTACCTGGGGATACAACAACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAATGGCCATACCCAACTGTAAGTAAAGAAAAAATAAACAAACAAAACTCCCATCTTCGAAAATGGAAAACCTCTATAATATTTCGTGTTTGTTTATCCAGGAAGACGATAAGGCTAAGCTAGTGGAGGAGACAGGTTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCTTTGAAGTCCAAGCGCAAGAGATAAAAAGAAGAGACAGAAAATTTTTCATCCAATTATAATATGAAATATGTTGTAGCTTTTGGTAAAAGGTTATGCTGACAGAGAGAGTAACAAAAACATGAGATTAAGCTTACTGTAAAATGAGGTTAGAGAATTAAGGATATTGTGACAGAGATTTGATTAACATGTCTTTTCTTTAAGGTTGTAAATTGTTGGCTT

mRNA sequence

ctctctctctctctttctttctttatttcttccttcttcttcttcccttccttccttttctctGTTTGTAAAATTTTCTGAAATTCTCAGACCTGGTGCAGAAAGTTTTGTGTCTCGGATCCCTATATACTCTTCTCTCTCTTTCTTCTTCATTTCACACCATTAACGAGAAAACTGACTCTTCTCTATCAACATATTCATTCAAAACTAAATCCCAACAAACCcttttttttcttcttcttcttcttcttcttcttcttcAATCACCAATTTCACTATTTGGGCTCACTCATTTCTTCTTTTTTCCTTCTTTACTTTCTAATTTACCTTTTTCTACACAACCCCTTTTTGCTTTTTTCTGCTAATTTTAACTTGGGTTTTTCGAGGGGTTCATTTGAAATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCAGGTGGGTCTAGTGGTGGCTTAAGCGGCGACGTTTCGGTTTCCGGCGAGGGAGTTCATAACAGTCAACTGAAAGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAGCTTCCGATGATCGATGCCCAGCTTTCTCAATCCCACCATATTTTGCGCTCTTATGCTTCTTCTCAACAGCATCACCAAAATGCTCATTCCTTAACGCCTCACGAGCGACAAGAGCTTGACAATTTTCTGCTTCAACAACATGTGAGAGTCCACGCAGTTGAAGCTGTTATGGCTTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTAAGCCTTGGTGAAGGAACCGGTGCAACAATGTCGGACGACGAAGACGACATTCCGATGGACTTTTCGCTCGATCAATCTGGAGCCGACGCACACGACATGATGGGATTCGGACCACTGCTACCAACTGAATCCGAAAGGTCGCTGATGGAGAGGGTCCGCCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAGAGAAGGGCAGGGAAGTTACCTGGGGATACAACAACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAATGGCCATACCCAACTGAAGACGATAAGGCTAAGCTAGTGGAGGAGACAGGTTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCTTTGAAGTCCAAGCGCAAGAGATAAAAAGAAGAGACAGAAAATTTTTCATCCAATTATAATATGAAATATGTTGTAGCTTTTGGTAAAAGGTTATGCTGACAGAGAGAGTAACAAAAACATGAGATTAAGCTTACTGTAAAATGAGGTTAGAGAATTAAGGATATTGTGACAGAGATTTGATTAACATGTCTTTTCTTTAAGGTTGTAAATTGTTGGCTT

Coding sequence (CDS)

ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCAGGTGGGTCTAGTGGTGGCTTAAGCGGCGACGTTtCGGTTTCCGGCGAGGGAGTTCATAACAGTCAACTGAAAGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAGcTTCCGATGATCGATGCCCAGCTTTCTCAATCCCACCATATTTTGCGCTCTTATGCTTCTTCTCAACAGCATCACCAAAATGCTCATTCCTTAACGCCTCACGAGCGACAAGAGCTTGACAATTTTCTGCTTCAACAACATGTGAGAGTCCACGCAGTTGAAGCTGTTATGGCTTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTAAGCCTTGGTGAAGGAACCGGTGCAACAATGTCGGACGACGAAGACGACATTCCGATGGACTTTTCGCTCGATCAATCTGGAGCCGACGCACACGACATGATGGGATTCGGACCACTGCTACCAACTGAATCCGAAAGGTCGCTGATGGAGAGGGTCCGCCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAGAGAAGGGCAGGGAAGTTACCTGGGGATACAACAACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAATGGCCATACCCAACTGAAGACGATAAGGCTAAGCTAGTGGAGGAGACAGGTTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCTTTGAAGTCCAAGCGCAAGAGATAA

Protein sequence

MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR*

Homology

[Close]

BLAST of Cucsa.302660.2 vs. Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 2.2e-122
Identity = 228/303 (75.25%), Postives = 248/303 (81.85%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQE  LGMM    G++ G  GD +V  E   N QLK EIATHP+YEQLL+AHVACLRVAT
Sbjct: 1   MQEAALGMM----GATVGGDGDTAVVAE--QNRQLKGEIATHPMYEQLLAAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL------------- 120
           PIDQLP+I+AQLSQSHH+LRSYAS+   +        H+R ELDNFL             
Sbjct: 61  PIDQLPIIEAQLSQSHHLLRSYASTAVGYH-------HDRHELDNFLAQYVMVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGAD-- 180
           LQQHVRVHAVEAVMACREIEN L +LTG +LGEG+GATMS+DEDD+PMDFS D SG D  
Sbjct: 121 LQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNSGVDFS 180

Query: 181 -AHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT 240
             HDM GFGPLLPTESERSLMERVRQELK+ELKQGFKSRIEDVREEI+RKRRAGKLPGDT
Sbjct: 181 GGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDT 240

Query: 241 TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS 288
           TTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NS S+TSLKS
Sbjct: 241 TTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLTSLKS 290

[Close]

BLAST of Cucsa.302660.2 vs. Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 8.3e-122
Identity = 227/303 (74.92%), Postives = 248/303 (81.85%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQE  LGM+ A  G  GG  GD +V  E   N Q+K EIATHP+Y+QLL+AHVACLRVAT
Sbjct: 1   MQEAALGMIGATVG--GGGDGDAAVVAE--QNRQMKGEIATHPMYDQLLAAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL------------- 120
           PIDQLP+I+AQLS SHH+LRSYAS+      A   + H+RQELDNFL             
Sbjct: 61  PIDQLPIIEAQLSHSHHLLRSYAST------AVGFSHHDRQELDNFLAQYVMVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGAD-- 180
           LQQHVRVHAVEAVMACREIEN L +LTG +LGEG+GATMS+DEDD+ MDFS D SG D  
Sbjct: 121 LQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLQMDFSSDNSGVDFS 180

Query: 181 -AHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT 240
             HDM GFGPLLPTESERSLMERVRQELK+ELKQGFKSRIEDVREEI+RKRRAGKLPGDT
Sbjct: 181 GGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDT 240

Query: 241 TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS 288
           TTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NS S+TSLKS
Sbjct: 241 TTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLTSLKS 293

[Close]

BLAST of Cucsa.302660.2 vs. Swiss-Prot
Match: KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 6.8e-108
Identity = 208/311 (66.88%), Postives = 236/311 (75.88%), Query Frame = 1


Query: 3   EPGLGMMTAAGG-----------SSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSA 62
           E G+G  T  GG           ++   +   + + E      LK EIA HPL EQL++A
Sbjct: 10  EMGVGSFTGGGGGGECSSSSATAAAAAAAAAAAAAAEAEERQLLKGEIAVHPLCEQLVAA 69

Query: 63  HVACLRVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL---- 122
           HV CLRVATPID LP+IDAQL+QS  +L SYA+   HH+    L+PH++QELD+FL    
Sbjct: 70  HVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAA---HHRPF--LSPHDKQELDSFLAQYM 129

Query: 123 ---------LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDI-PMDF 182
                    LQQHVRVHAVEAVMACREIE +LQ LTG +L EGTGATMS+DED+  PM  
Sbjct: 130 MLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATLEEGTGATMSEDEDETAPMLE 189

Query: 183 SLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRA 242
                G+D HD+MGFGPL+PT+SERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRA
Sbjct: 190 GPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRA 249

Query: 243 GKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 289
           GKLPGDTTT+LK WWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NSQ
Sbjct: 250 GKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSQ 309

[Close]

BLAST of Cucsa.302660.2 vs. Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.9e-98
Identity = 187/290 (64.48%), Postives = 216/290 (74.48%), Query Frame = 1


Query: 13  GGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQL 72
           GG  GG+            N++ KAEI  HPLYE LLSAHVACLR+ATP+DQLP IDAQL
Sbjct: 153 GGGDGGVMN--------WQNARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRIDAQL 212

Query: 73  SQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL-------------LQQHVRVHAVEA 132
           +QS +++  Y++              + +ELD F+             LQQHVRVHA+EA
Sbjct: 213 AQSQNVVAKYSALGNGMVG-------DDKELDQFMRNYVLLLCSFKEQLQQHVRVHAMEA 272

Query: 133 VMACREIENTLQALTGVSLGEGTGATMSDDEDD-IPMDFSLDQSGADAHDMMGFGPLLPT 192
           VMAC EIE +LQ+LTGVS GEGT ATMSDDEDD +  D +L   G + HD MGFGPL+PT
Sbjct: 273 VMACWEIEQSLQSLTGVSPGEGTSATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPT 332

Query: 193 ESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKW 252
           ESERSLMERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTT+VLK WWQ HSKW
Sbjct: 333 ESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKW 392

Query: 253 PYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 289
           PYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  + T LKSKRKR
Sbjct: 393 PYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 427

[Close]

BLAST of Cucsa.302660.2 vs. Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 7.0e-97
Identity = 186/292 (63.70%), Postives = 220/292 (75.34%), Query Frame = 1


Query: 13  GGSSGGLSGDVSVSGEGV---HNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMID 72
           GG      G  + + +GV    N++ KAEI +HPLYEQLLSAHVACLR+ATP+DQLP ID
Sbjct: 134 GGGENKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRID 193

Query: 73  AQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL-------------LQQHVRVHA 132
           AQL+QS H++  Y++     Q        + +ELD F+             LQQHVRVHA
Sbjct: 194 AQLAQSQHVVAKYSALGAAAQGLVG----DDKELDQFMTHYVLLLCSFKEQLQQHVRVHA 253

Query: 133 VEAVMACREIENTLQALTGVSLGEGTGATMSDDEDD-IPMDFSLDQSGADAHDMMGFGPL 192
           +EAVMAC EIE +LQ+LTGVS GEG GATMSDDED+ +  D ++   G D   ++GFGPL
Sbjct: 254 MEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGLD---VLGFGPL 313

Query: 193 LPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQH 252
           +PTESERSLMERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTT+VLK WWQ H
Sbjct: 314 IPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSH 373

Query: 253 SKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 288
           SKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S T LK+KRK
Sbjct: 374 SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKNKRK 418

[Close]

BLAST of Cucsa.302660.2 vs. TrEMBL
Match: A0A0A0KKD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G156150 PE=4 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 3.1e-160
Identity = 288/301 (95.68%), Postives = 288/301 (95.68%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT
Sbjct: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL------------- 120
           PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL             
Sbjct: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180
           LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH
Sbjct: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180

Query: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTV 240
           DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTV
Sbjct: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTV 240

Query: 241 LKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 289
           LKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK
Sbjct: 241 LKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 300

[Close]

BLAST of Cucsa.302660.2 vs. TrEMBL
Match: A0A061G401_THECC (KNOTTED-like homeobox of 7 OS=Theobroma cacao GN=TCM_016150 PE=4 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 2.8e-140
Identity = 259/303 (85.48%), Postives = 276/303 (91.09%), Query Frame = 1


Query: 1   MQEPGLGMMTAAG-GSSGGLS-GDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRV 60
           MQEPGLGMM++ G G+ GGLS G+VSVSG+   N QL+AEIATHPLYEQLL+AHV+CLRV
Sbjct: 1   MQEPGLGMMSSGGSGAIGGLSSGEVSVSGD--QNRQLRAEIATHPLYEQLLAAHVSCLRV 60

Query: 61  ATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL----------- 120
           ATPIDQLP+IDAQL+QSH++LRSYAS  QHHQ+ HSL+PHERQELDNFL           
Sbjct: 61  ATPIDQLPLIDAQLAQSHNLLRSYAS--QHHQHGHSLSPHERQELDNFLAQYLIVLCTFK 120

Query: 121 --LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGAD 180
             LQQHVRVHAVEAVMACREIEN LQALTGVSLGEGTGATMSDDED++ MDFSLDQSGAD
Sbjct: 121 EQLQQHVRVHAVEAVMACREIENNLQALTGVSLGEGTGATMSDDEDELQMDFSLDQSGAD 180

Query: 181 AHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT 240
            HD+MGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT
Sbjct: 181 GHDLMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT 240

Query: 241 TVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSK 289
           TVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSK
Sbjct: 241 TVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSK 299

[Close]

BLAST of Cucsa.302660.2 vs. TrEMBL
Match: V9P820_GOSHI (KNOX protein OS=Gossypium hirsutum GN=KNL1 PE=2 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.7e-140
Identity = 258/304 (84.87%), Postives = 274/304 (90.13%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSG--GLS-GDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLR 60
           MQEPGLGMM++ GGS G  GLS G+VSVSGE   N QLKAEIA HPLYEQLL+AHV+CLR
Sbjct: 1   MQEPGLGMMSSGGGSGGIGGLSSGEVSVSGE--QNRQLKAEIAVHPLYEQLLAAHVSCLR 60

Query: 61  VATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL---------- 120
           VATPIDQLP+IDAQL+QSH++LRSYAS  QHHQ+ HSL+PHERQELDNFL          
Sbjct: 61  VATPIDQLPLIDAQLAQSHNLLRSYAS--QHHQHGHSLSPHERQELDNFLAQYLIVLCTF 120

Query: 121 ---LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGA 180
              LQQHVRVHA+EAVMACREIEN LQALTGV+LGEGTGATMSDDEDD+ MDFSLDQSG 
Sbjct: 121 KEQLQQHVRVHAIEAVMACREIENNLQALTGVTLGEGTGATMSDDEDDMQMDFSLDQSGT 180

Query: 181 DAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT 240
           D HD+MGFGPL+PTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT
Sbjct: 181 DGHDLMGFGPLIPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT 240

Query: 241 TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS 289
           TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS
Sbjct: 241 TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS 300

[Close]

BLAST of Cucsa.302660.2 vs. TrEMBL
Match: A0A0D2S334_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G206600 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 6.1e-140
Identity = 258/304 (84.87%), Postives = 274/304 (90.13%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSG--GLS-GDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLR 60
           MQEPGLGMM++ GGS G  GLS G+VSVSGE   N QLKAEIA HPLYEQLL+AHV+CLR
Sbjct: 1   MQEPGLGMMSSGGGSGGIGGLSSGEVSVSGE--QNRQLKAEIAVHPLYEQLLAAHVSCLR 60

Query: 61  VATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL---------- 120
           VATPIDQLP+IDAQL+QSH++LRSYAS  QHHQ+ HSL+PHERQELDNFL          
Sbjct: 61  VATPIDQLPLIDAQLAQSHNLLRSYAS--QHHQHGHSLSPHERQELDNFLAQYLIVLCTF 120

Query: 121 ---LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGA 180
              LQQHVRVHA+EAVMACREIEN LQALTGV+LGEGTGATMSDDEDD+ MDFSLDQSG 
Sbjct: 121 KEQLQQHVRVHAIEAVMACREIENNLQALTGVTLGEGTGATMSDDEDDMQMDFSLDQSGT 180

Query: 181 DAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT 240
           D HD+MGFGPL+PTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT
Sbjct: 181 DGHDLMGFGPLVPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT 240

Query: 241 TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS 289
           TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS
Sbjct: 241 TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS 300

[Close]

BLAST of Cucsa.302660.2 vs. TrEMBL
Match: A9P848_POPTR (Homeodomain transcription factor family protein OS=Populus trichocarpa GN=POPTR_0001s08550g PE=2 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 5.2e-139
Identity = 257/303 (84.82%), Postives = 273/303 (90.10%), Query Frame = 1


Query: 1   MQEPGLGMM-TAAGGSSGGLS-GDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRV 60
           MQEP LGMM + +GG+ GGLS G++SVS  G  + QLKAEIATHPLYEQLLSAHV+CLRV
Sbjct: 1   MQEPNLGMMGSGSGGALGGLSSGEMSVSLSGDQSRQLKAEIATHPLYEQLLSAHVSCLRV 60

Query: 61  ATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL----------- 120
           ATPIDQLP+IDAQLSQSHH+LRSYAS  QH+Q+ HSL+PHERQ+LDNFL           
Sbjct: 61  ATPIDQLPLIDAQLSQSHHLLRSYAS--QHNQHGHSLSPHERQDLDNFLAQYLIILCTFK 120

Query: 121 --LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGAD 180
             LQQHVRVHAVEAVMACREIE TLQALTGV+LGEGTGATMSDDEDD+ MDFSLDQS AD
Sbjct: 121 DQLQQHVRVHAVEAVMACREIETTLQALTGVTLGEGTGATMSDDEDDLQMDFSLDQSSAD 180

Query: 181 AHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT 240
            HDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT
Sbjct: 181 GHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT 240

Query: 241 TVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSK 289
           +VLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSK
Sbjct: 241 SVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSK 300

[Close]

BLAST of Cucsa.302660.2 vs. TAIR10
Match: AT1G62990.1 (AT1G62990.1 KNOTTED-like homeobox of Arabidopsis thaliana 7)

HSP 1 Score: 439.9 bits (1130), Expect = 1.2e-123
Identity = 228/303 (75.25%), Postives = 248/303 (81.85%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQE  LGMM    G++ G  GD +V  E   N QLK EIATHP+YEQLL+AHVACLRVAT
Sbjct: 1   MQEAALGMM----GATVGGDGDTAVVAE--QNRQLKGEIATHPMYEQLLAAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL------------- 120
           PIDQLP+I+AQLSQSHH+LRSYAS+   +        H+R ELDNFL             
Sbjct: 61  PIDQLPIIEAQLSQSHHLLRSYASTAVGYH-------HDRHELDNFLAQYVMVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGAD-- 180
           LQQHVRVHAVEAVMACREIEN L +LTG +LGEG+GATMS+DEDD+PMDFS D SG D  
Sbjct: 121 LQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNSGVDFS 180

Query: 181 -AHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT 240
             HDM GFGPLLPTESERSLMERVRQELK+ELKQGFKSRIEDVREEI+RKRRAGKLPGDT
Sbjct: 181 GGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDT 240

Query: 241 TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS 288
           TTVLKNWWQQH KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NS S+TSLKS
Sbjct: 241 TTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLTSLKS 290

[Close]

BLAST of Cucsa.302660.2 vs. TAIR10
Match: AT5G25220.1 (AT5G25220.1 KNOTTED1-like homeobox gene 3)

HSP 1 Score: 355.1 bits (910), Expect = 4.0e-98
Identity = 186/292 (63.70%), Postives = 220/292 (75.34%), Query Frame = 1


Query: 13  GGSSGGLSGDVSVSGEGV---HNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMID 72
           GG      G  + + +GV    N++ KAEI +HPLYEQLLSAHVACLR+ATP+DQLP ID
Sbjct: 134 GGGENKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRID 193

Query: 73  AQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL-------------LQQHVRVHA 132
           AQL+QS H++  Y++     Q        + +ELD F+             LQQHVRVHA
Sbjct: 194 AQLAQSQHVVAKYSALGAAAQGLVG----DDKELDQFMTHYVLLLCSFKEQLQQHVRVHA 253

Query: 133 VEAVMACREIENTLQALTGVSLGEGTGATMSDDEDD-IPMDFSLDQSGADAHDMMGFGPL 192
           +EAVMAC EIE +LQ+LTGVS GEG GATMSDDED+ +  D ++   G D   ++GFGPL
Sbjct: 254 MEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGLD---VLGFGPL 313

Query: 193 LPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQH 252
           +PTESERSLMERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTT+VLK WWQ H
Sbjct: 314 IPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSH 373

Query: 253 SKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 288
           SKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S T LK+KRK
Sbjct: 374 SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKNKRK 418

[Close]

BLAST of Cucsa.302660.2 vs. TAIR10
Match: AT5G11060.1 (AT5G11060.1 KNOTTED1-like homeobox gene 4)

HSP 1 Score: 348.6 bits (893), Expect = 3.7e-96
Identity = 180/275 (65.45%), Postives = 214/275 (77.82%), Query Frame = 1


Query: 32  NSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQN 91
           N++ KAEI +HPLYEQLLSAHVACLR+ATP+DQLP IDAQL+QS +++  Y++ +     
Sbjct: 120 NARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEA---- 179

Query: 92  AHSLTPHERQELDNFL-------------LQQHVRVHAVEAVMACREIENTLQALTGVSL 151
           A  L   + +ELD+F+             LQQHVRVHA+EAVMAC EIE +LQ+ TGVS 
Sbjct: 180 AQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSP 239

Query: 152 GEGTGATMSDDEDDIPMDFSLDQSGADAH------DMMGFGPLLPTESERSLMERVRQEL 211
           GEGTGATMS+DED+        Q  +DAH      D +GFGPL+PTESERSLMERVRQEL
Sbjct: 240 GEGTGATMSEDEDE--------QVESDAHLFDGSLDGLGFGPLVPTESERSLMERVRQEL 299

Query: 212 KIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEE 271
           K ELKQG+K +I D+REEILRKRRAGKLPGDTT+VLK+WWQ HSKWPYPTE+DKA+LV+E
Sbjct: 300 KHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQE 359

Query: 272 TGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 288
           TGLQLKQINNWFINQRKRNWHSN  S T  K+KR+
Sbjct: 360 TGLQLKQINNWFINQRKRNWHSNPSSSTVSKNKRR 382

[Close]

BLAST of Cucsa.302660.2 vs. TAIR10
Match: AT4G32040.1 (AT4G32040.1 KNOTTED1-like homeobox gene 5)

HSP 1 Score: 323.9 bits (829), Expect = 9.8e-89
Identity = 170/281 (60.50%), Postives = 206/281 (73.31%), Query Frame = 1


Query: 25  VSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYAS 84
           V GE   ++  KA I  HP+YEQLL+AHVACLRVATP+DQ+P IDAQLSQ H +   Y++
Sbjct: 108 VGGEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYST 167

Query: 85  SQQHHQNAHSLTPHERQELDNFL-------------LQQHVRVHAVEAVMACREIENTLQ 144
                 N         +ELD+F+             LQ HV VHA+EA+ AC EIE +LQ
Sbjct: 168 LGVVVDN---------KELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQ 227

Query: 145 ALTGVSLGEGTGATMSDDEDD--IPMDFSLDQSGADAHD-MMGFGPLLPTESERSLMERV 204
           +LTGVS  E  G TMSDDEDD  +  + ++     D  D +MGFGPL+PTE ERSLMERV
Sbjct: 228 SLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERV 287

Query: 205 RQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAK 264
           ++ELK ELKQGFK +I D+REEI+RKRRAGKLPGDTT+VLK WW+ HSKWPYPTE+DKAK
Sbjct: 288 KKELKHELKQGFKEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAK 347

Query: 265 LVEETGLQLKQINNWFINQRKRNWHSNSQSVTSL-KSKRKR 289
           LV+ETGLQLKQINNWFINQRKRNW+SNS + ++L K+KRKR
Sbjct: 348 LVQETGLQLKQINNWFINQRKRNWNSNSSTSSTLTKNKRKR 379

[Close]

BLAST of Cucsa.302660.2 vs. TAIR10
Match: AT1G70510.1 (AT1G70510.1 KNOTTED-like from Arabidopsis thaliana 2)

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-28
Identity = 84/253 (33.20%), Postives = 122/253 (48.22%), Query Frame = 1


Query: 33  SQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNA 92
           S +K++IA+HPLY +LL  ++ C +V  P++   +++    ++H   R  A       + 
Sbjct: 67  SVIKSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKRDVAPL-----SC 126

Query: 93  HSLTPHERQELDNFL---------LQQHVRVHAVEAVMACREIENTLQAL-TGVSLGEGT 152
               P    ELD F+          +  +     EA     +IE  LQ L TG +     
Sbjct: 127 FGADP----ELDEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNLCTGPASATAL 186

Query: 153 ---GATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQG 212
              GA  SD+E     D + D S   ++D                     ++LK +L + 
Sbjct: 187 SDDGAVSSDEELREDDDIAADDSQQRSND---------------------RDLKDQLLRK 246

Query: 213 FKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQ 272
           F S I  ++ E  +K++ GKLP +    L +WW  H+KWPYPTE DK  L EETGL  KQ
Sbjct: 247 FGSHISSLKLEFSKKKKKGKLPREARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQ 289

[Close]

BLAST of Cucsa.302660.2 vs. NCBI nr
Match: gi|449452384|ref|XP_004143939.1| (PREDICTED: homeobox protein knotted-1-like 7 [Cucumis sativus])

HSP 1 Score: 572.4 bits (1474), Expect = 4.5e-160
Identity = 288/301 (95.68%), Postives = 288/301 (95.68%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT
Sbjct: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL------------- 120
           PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL             
Sbjct: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180
           LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH
Sbjct: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180

Query: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTV 240
           DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTV
Sbjct: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTV 240

Query: 241 LKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 289
           LKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK
Sbjct: 241 LKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 300

[Close]

BLAST of Cucsa.302660.2 vs. NCBI nr
Match: gi|659073680|ref|XP_008437194.1| (PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo])

HSP 1 Score: 566.2 bits (1458), Expect = 3.2e-158
Identity = 287/301 (95.35%), Postives = 287/301 (95.35%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60
           MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT
Sbjct: 1   MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVAT 60

Query: 61  PIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL------------- 120
           PIDQLPMIDAQLSQSHHILRSYAS QQHHQNAHSLTPHERQELDNFL             
Sbjct: 61  PIDQLPMIDAQLSQSHHILRSYAS-QQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQ 120

Query: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180
           LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH
Sbjct: 121 LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAH 180

Query: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTV 240
           DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTV
Sbjct: 181 DMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTV 240

Query: 241 LKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 289
           LKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK
Sbjct: 241 LKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 300

[Close]

BLAST of Cucsa.302660.2 vs. NCBI nr
Match: gi|1009174552|ref|XP_015868401.1| (PREDICTED: homeobox protein knotted-1-like 7 [Ziziphus jujuba])

HSP 1 Score: 507.7 bits (1306), Expect = 1.4e-140
Identity = 264/305 (86.56%), Postives = 271/305 (88.85%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSGGLSGDVSVS-GEGV---HNSQLKAEIATHPLYEQLLSAHVACL 60
           MQEPGLGMM AAGG   GL G+VS+S G GV    + QLKAEIATHPLYEQLLSAHVACL
Sbjct: 1   MQEPGLGMMAAAGG---GLGGEVSISSGGGVGGDQHRQLKAEIATHPLYEQLLSAHVACL 60

Query: 61  RVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL--------- 120
           RVATPIDQLP+IDAQLSQSHH+LRSYAS Q  HQ  HSL PHERQELDNFL         
Sbjct: 61  RVATPIDQLPLIDAQLSQSHHLLRSYASHQ--HQQPHSLPPHERQELDNFLAQYLIVLCS 120

Query: 121 ----LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSG 180
               LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDED++ MDFSLDQSG
Sbjct: 121 FKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDELQMDFSLDQSG 180

Query: 181 ADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGD 240
            D HDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGD
Sbjct: 181 GDGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGD 240

Query: 241 TTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLK 289
           TTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLK
Sbjct: 241 TTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLK 300

[Close]

BLAST of Cucsa.302660.2 vs. NCBI nr
Match: gi|590677690|ref|XP_007040089.1| (KNOTTED-like homeobox of 7 [Theobroma cacao])

HSP 1 Score: 506.1 bits (1302), Expect = 3.9e-140
Identity = 259/303 (85.48%), Postives = 276/303 (91.09%), Query Frame = 1


Query: 1   MQEPGLGMMTAAG-GSSGGLS-GDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRV 60
           MQEPGLGMM++ G G+ GGLS G+VSVSG+   N QL+AEIATHPLYEQLL+AHV+CLRV
Sbjct: 1   MQEPGLGMMSSGGSGAIGGLSSGEVSVSGD--QNRQLRAEIATHPLYEQLLAAHVSCLRV 60

Query: 61  ATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL----------- 120
           ATPIDQLP+IDAQL+QSH++LRSYAS  QHHQ+ HSL+PHERQELDNFL           
Sbjct: 61  ATPIDQLPLIDAQLAQSHNLLRSYAS--QHHQHGHSLSPHERQELDNFLAQYLIVLCTFK 120

Query: 121 --LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGAD 180
             LQQHVRVHAVEAVMACREIEN LQALTGVSLGEGTGATMSDDED++ MDFSLDQSGAD
Sbjct: 121 EQLQQHVRVHAVEAVMACREIENNLQALTGVSLGEGTGATMSDDEDELQMDFSLDQSGAD 180

Query: 181 AHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT 240
            HD+MGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT
Sbjct: 181 GHDLMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT 240

Query: 241 TVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSK 289
           TVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSK
Sbjct: 241 TVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSK 299

[Close]

BLAST of Cucsa.302660.2 vs. NCBI nr
Match: gi|540849835|gb|AGV15454.1| (KNOX protein [Gossypium hirsutum])

HSP 1 Score: 505.4 bits (1300), Expect = 6.7e-140
Identity = 258/304 (84.87%), Postives = 274/304 (90.13%), Query Frame = 1


Query: 1   MQEPGLGMMTAAGGSSG--GLS-GDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLR 60
           MQEPGLGMM++ GGS G  GLS G+VSVSGE   N QLKAEIA HPLYEQLL+AHV+CLR
Sbjct: 1   MQEPGLGMMSSGGGSGGIGGLSSGEVSVSGE--QNRQLKAEIAVHPLYEQLLAAHVSCLR 60

Query: 61  VATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFL---------- 120
           VATPIDQLP+IDAQL+QSH++LRSYAS  QHHQ+ HSL+PHERQELDNFL          
Sbjct: 61  VATPIDQLPLIDAQLAQSHNLLRSYAS--QHHQHGHSLSPHERQELDNFLAQYLIVLCTF 120

Query: 121 ---LQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGA 180
              LQQHVRVHA+EAVMACREIEN LQALTGV+LGEGTGATMSDDEDD+ MDFSLDQSG 
Sbjct: 121 KEQLQQHVRVHAIEAVMACREIENNLQALTGVTLGEGTGATMSDDEDDMQMDFSLDQSGT 180

Query: 181 DAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT 240
           D HD+MGFGPL+PTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT
Sbjct: 181 DGHDLMGFGPLIPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDT 240

Query: 241 TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS 289
           TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS
Sbjct: 241 TTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKS 300

The following BLAST results are available for this feature:

BLAST of Cucsa.302660.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KNAT7_ARATH	2.2e-122	75.25	Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1	[more]
HD1_BRANA	8.3e-122	74.92	Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1	[more]
KNOS3_ORYSJ	6.8e-108	66.88	Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 ...	[more]
KNAP3_MALDO	4.9e-98	64.48	Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1	[more]
KNAT3_ARATH	7.0e-97	63.70	Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1	[more]

BLAST of Cucsa.302660.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKD3_CUCSA	3.1e-160	95.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G156150 PE=4 SV=1	[more]
A0A061G401_THECC	2.8e-140	85.48	KNOTTED-like homeobox of 7 OS=Theobroma cacao GN=TCM_016150 PE=4 SV=1	[more]
V9P820_GOSHI	4.7e-140	84.87	KNOX protein OS=Gossypium hirsutum GN=KNL1 PE=2 SV=1	[more]
A0A0D2S334_GOSRA	6.1e-140	84.87	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G206600 PE=4 SV=1	[more]
A9P848_POPTR	5.2e-139	84.82	Homeodomain transcription factor family protein OS=Populus trichocarpa GN=POPTR_...	[more]

BLAST of Cucsa.302660.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62990.1	1.2e-123	75.25	KNOTTED-like homeobox of Arabidopsis thaliana 7	[more]
AT5G25220.1	4.0e-98	63.70	KNOTTED1-like homeobox gene 3	[more]
AT5G11060.1	3.7e-96	65.45	KNOTTED1-like homeobox gene 4	[more]
AT4G32040.1	9.8e-89	60.50	KNOTTED1-like homeobox gene 5	[more]
AT1G70510.1	4.3e-28	33.20	KNOTTED-like from Arabidopsis thaliana 2	[more]

BLAST of Cucsa.302660.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452384\|ref\|XP_004143939.1\|	4.5e-160	95.68	PREDICTED: homeobox protein knotted-1-like 7 [Cucumis sativus]	[more]
gi\|659073680\|ref\|XP_008437194.1\|	3.2e-158	95.35	PREDICTED: homeobox protein knotted-1-like 7 [Cucumis melo]	[more]
gi\|1009174552\|ref\|XP_015868401.1\|	1.4e-140	86.56	PREDICTED: homeobox protein knotted-1-like 7 [Ziziphus jujuba]	[more]
gi\|590677690\|ref\|XP_007040089.1\|	3.9e-140	85.48	KNOTTED-like homeobox of 7 [Theobroma cacao]	[more]
gi\|540849835\|gb\|AGV15454.1\|	6.7e-140	84.87	KNOX protein [Gossypium hirsutum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001356	Homeobox_dom
IPR005539	ELK_dom
IPR005540	KNOX1
IPR005541	KNOX2
IPR008422	Homeobox_KN_domain
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:2000652	regulation of secondary cell wall biogenesis
biological_process	GO:0010089	xylem development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.302660	Cucsa.302660	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.302660.2	Cucsa.302660.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.302660.2.five_prime_UTR.1	Cucsa.302660.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.302660.2.CDS.1	Cucsa.302660.2.CDS.1	CDS
Cucsa.302660.2.CDS.2	Cucsa.302660.2.CDS.2	CDS
Cucsa.302660.2.CDS.3	Cucsa.302660.2.CDS.3	CDS
Cucsa.302660.2.CDS.4	Cucsa.302660.2.CDS.4	CDS
Cucsa.302660.2.CDS.5	Cucsa.302660.2.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.302660.2.three_prime_UTR.1	Cucsa.302660.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 213..278 score: 1.4
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 211..274 score: 11
IPR005539	ELK domain	PROFILE	PS51213	ELK	coord: 191..211 score: 9
IPR005540	KNOX1	PFAM	PF03790	KNOX1	coord: 35..76 score: 6.1
IPR005540	KNOX1	SMART	SM01255	KNOX1_2	coord: 33..77 score: 2.5
IPR005541	KNOX2	SMART	SM01256	KNOX2_2	coord: 93..135 score: 3.
IPR008422	Homeobox KN domain	PFAM	PF05920	Homeobox_KN	coord: 231..270 score: 9.6
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 218..276 score: 6.6
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 213..278 score: 3.76
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 8..288 score: 1.6E
None	No IPR available	PANTHER	PTHR11850:SF74	HOMEOBOX PROTEIN KNOTTED-1-LIKE 7	coord: 8..288 score: 1.6E