Cucsa.301870.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAGAGAGCAAGGAGTGCGAAAATCTAAACCAACGTAAAAAGGCGAAGTTCTGAATTCTTGATTTAGCAGCGCGATCAAGACAGGGGATGGATGGGGATATGTATATGAAATACGGGTTGATTCATTAGCAAGCATAACTGAAAAAGGCTGAAATCCGAGCAGCTCGAAGAACAAGAGAAGAAGGGAAAATGGGGAGCAGAACTAATTTCTACAAGAATCCTTCCATCTCCTACAAGAAGGACTTGCATCTCTCCTCCGCTCTTCAAAATCTGAGAGGTAACCTAATCCTCGAAAATTTTCTTTATAATTCATATTGCTGAAATTGGTTTTGTTTTTCAAATTCTCTTTAGCGTATAACATTGCTACCGGCAATGCTCCTCCGACCGATGTTCAAGTTCAATCACCTCCTGTCCCTGTCGTGAAGAAGAATGAGAATCGGAAACGCCAACGGGAGCCAGAATTATGTGGTACTCAAATGTATGATGTTGGAAATAGTGACGGCCCTATGTCTCATCAAGATTACATTGAAAGGAGAAGGTATAATCGAATGTAAAAAAAATTCAAGGCTTTGCGAGTTTTTCTTTTGGCGAATTGGCTATTGAAATGTGATTTTACAAATGCTTACAGAAAAGAAGCAAATAAATCTCAACCTTATGAGACACTTACGGAAGATGTTTTGGTAACTAAATTTTCTGGATTTTTCGAGGCTTGGGGAATTTTCTTTGAATGTCACGTTAAGGCTTTTTTTCCCTTCTTCGTCTTCTTCTGTGGCAGGTAGCTTCCAGCTCGGGCTTGAACTTGGTCGACTATGAAAGTAAGCTTCTTTGACATTGTTTTGCTAGTTTAGTTTCTTTACTTGATCCTACGTGTATATGATTACTGGGGTTTGTTAGTGGCACCAACAAATTTCAACTATGTGATATTGTCTCCTAATTTTTCAAGGAAGTTGTAGCTTTGATTTGAGCTACATGGCATATAATTCATTCTTGTTATTGATGATTTTTGGTGGTGAAACTTCTATCTCACGTCTAAAATAATATCTATCATAGAGGCTGGATCTTTTTTATGTTTCATAAAACTTTTGACTCATTGATTGGTACACATCCTCATGAAAGATTGTCCTTTACTATATCATATTCTTCAAAGGATTGGCGAATGTGAATGTGAATCCTAAATTTGAGTACCCACAATTCTTTATTTTATTATTATGACCATATGATAGCAGTAGCTAATACTTGTGACTTGTTAGATAGTGTTTTTTGTTTGAGCTCTTATACTTATTATTTTCTGATATAGTGGATCACTCTTATTTGAAAGAAAGAAAGACAAAGAACTGGGTCTGCTATTAAATATTGCTTTCCAATTTTTGCTCTGCGCTTAATGTAATATGTTTTTATGGAAAAATATTCTGTTTCCAAATTTCAGAGGGTTGACTTTCTAACCTGTTTGGATATAAAGTGTTCGATAACCAACTTACCTGACATTTATATTGATTTATTGTTTCGGGGTTTATTCTCATTTCATTTTACATGTTCATTAGGTGATGAGAGCGTGTCTTCAGATGGTGCAGAAAAGCCAGATGTTCAAAATTCCAGTTTGTTCTTGGACTCAACTATCACTTTTAAGTAATTTCTCTTGGGTTGCTTAGGTTATTGTTATCGTGGTGATAAACTCAGTGGCTTAACTTGATTATTATTATTTTGAGTTTAGCGACATTTGGGAGTGGGAGATTTGAGCCTCTAATCTCTTGGTTGAAGATATGTCTTAACCAATTGAATTATGCTCACGCCAGCCGTGGTTAACATTATTAGATTCCTACTGTTGATTTTAAATTTATTGATTTTCCAAAGTTCTTTAATACATCTAATTCTGCATGTCAGCACAACTAGTCAATCATTGCATATTTGAAATCTAATTTCATTCTTTCTTAGGTCTCTTGAATGATTACAAGGAAGTTGAAAGCAAAACTGAGCAACGTTTTGCTGTTGCGGGAGAACCTGTTTGTGTCGTATGCGGTAGATATGGAGAATACATATGTGATGAAGTGAGATATGAAAAACTTATTTAATGCTTTCACTCGTGTTAAACTATTATATTTGGCCCATCCTAAGTCATTGTGCATGATTATTTTGATAGACCAATGATGACATTTGCAGCATGGAGTGCAAATTCAAGCTTTTGGAAATTCTTAAACGAGGCGAGGTATTTTTTCCCCAACCTTATTTATTATGGTAAATGATAACATTGTGTATAATGATTCTGATGCTTCTTTCTCTTTGTTTTCAGGAGTTCCCAAACTGTGAAGTGAAAGATGTTGCCTTACCAGAAAGTAAATATATCCTGCCTTCCCCAGAGTTTGGGGAGGACACCTGGGATTATAAGAACCATCGCTGGTCCAAAAAGAAATCCAATCTTTGTACTTATGAGTGGTAAATCTCTGCCATAACTTTGTCTGTATGATCATTATTTAGTACTATCATTTTTTTAAAGACATATAATTTTCACTATCAAAGGTGAAATACAAAAGGATAGGGGAGATGAGATGAAATTGGCATGAATGTTTCTGATTTTATATATTTTCCCCACTTAACTTTTGTAAATAGTTAGGAGCTTTATTGCTGATAAATGTAAGCAAAGATACGTTATTGAGGAAAGTCATGATACAGTTTTCTTGCTCAGTTTGGATGGTCACTCTTAACCTCTTGTACTTTCAATCACAGCTGGAAATGTCAAAAACCGGGACACCTTGCTGAAGATTGTTTGGTGAAAACCAGTAACCAGGTTCGTATTGTATTGCAAATCATCTAGCTTAATTGAGCGTTCAAGTCTTTTTGGGCCCTAGATGTGCTTGGTGGTTAGTAATCTTTGGCCAATGACTTATCCGTGTTTGTAAATCTAGGCAATGCAACAAATGACTTCCAATCCTGTACCTGGTGATCTCCTTGGACTATACAAAAGGTGATGAGATGCTAACTATCGTTGTTTTCTGTTTCTACTAGTTATCGTTGGAACTTGTCCCTGGGTGTTATCTGCTAGAAAATGTCTATAATTTGACAGAAAATGCATTTATTTTATCATGCCATGAAAGATTACTAAGCATTTATTGATGCTGAAATGTTATATCTTTCATTTGCTAGGATTACATGTATGTACTGTTTTTTTAGTTCCATTTAATAAGAATTATTGAAAGTAAAGACGAAGAACAAACACAAGTTTTATGTGAACTCTAGTTCAAGGAGAAAAACTCCAGTGCAGATTTTTCTTATAACAAAAATAATAATTAAAAACTATGGGGGGGAGCATTAATTTATAGGCAATAGAAGCTTAATTAAAATAATGATAAATAATTAGGGCAAAATAAAAGACTAAAAAACCTTTGGGCTTTCAACATACAAACCTGCTAATTCTAACAAAAATAATAATGAATGTGTCCTATTTTTCACATGGAGTGAGAATTTAAATTATAAATATCACTTCCACTTTCTTGAACTTTAATTGATAGTTATTCAAGCAGTCAAAAGAAAAGGGTGAGGCAGGAAGGAGTCAGGGCTTAAGATGTGTAATATATAGTTATAAGCAGAATTTCGTTTATATTGGGTGGATTTGCATTGTGTGTGCGAGTTGTTTGTTAAAGAATTCTGGCATTCAACAGTCCCAACGAAATTTTCCTGCTTGTTAATAACAAAATATAATATGAATCAAGATTGCACGCCCATTGCATATTAATGTAGAAGAAAGGGTGGCACTAATACAAAATTGGTGTGCTTGAAATCCTTCGTCTGCAGATGTTACCAGATGGGAAAGAATTTGTCAAATGCACTATGCAATGAATGCAGCTGTTCATATAGTTTGGCGACATGTCTTGATTGTAACACTGTTTACTGTGACAGGCAAGCACTTTCATCCATTTCTTTACATTGTTTATGAGATTTGGACTTAATTCGGTTAAAGAATTCTCCTGTATCAAATAATGAGTATCATAAAGTGTTTAAGTAGGAAGCAAATGTCTTAAATGTTAGTATTATTATTTTCTTAATTTTCAGTAAGAAGCATACTCTAGCAGTTGAATTTATTTTCTGTAAAGAATTATGTTATTGCAAAATGTATGTTATTGGTGAATTCATTTTTCATAATGACTGCTCAACTTCTTTCTTCTGTCGTCTCTCACCAGTGTTTCTATGTTTACAGTGCAGGTCATTTAAATGAGCATATCCACACACACCCAACTCATGGACTATATTACTCGCATAAACTCAAACGTCTTGTAAGTATACAAGGCCATAAATATCTACCTTGTTTTCTTTGTATACTGTTGTAATAGTTTTCCGTGGATAAATTCATCTTGATTCTTGACTAGATAGAGTTAAATCTCTATTCAATGATACTAATTAGCTTTAAACTTTTGAAGTAAATTTTTCTATATACATTCCTTTTATTAGATTTTTTTCTGCATAAACTGAAATTTCGAGGAACTTAAGATTGGCTTTATTTTTTATGAAGAAGCGTCAGATGTTATATTCTAATTCTTTATGTAAAAGGGGGATTGAGATACATTTCTATCATGCTTTGGGTGACTGTTCATCTATTTTAAACGTAGCTACATCTGTGGGCTGCAATTGTGCATGCTATAAATGTATTGTACTTGTTATTGAATCGATGCATTAAGTGATCCTAAATCATTTTTTTCCTAGGTAAAATGCTGCAAATCAACATGCAGGGTGACTCAAATCAAGGATCTTCTAGTGTGTCATTACTGTTTTGATAAAGCTTTCGACAAGTTCTACGATATGTATACTGCATCATGGTA ATAGAGAGCAAGGAGTGCGAAAATCTAAACCAACGTAAAAAGGCGAAGTTCTGAATTCTTGATTTAGCAGCGCGATCAAGACAGGGGATGGATGGGGATATGTATATGAAATACGGGTTGATTCATTAGCAAGCATAACTGAAAAAGGCTGAAATCCGAGCAGCTCGAAGAACAAGAGAAGAAGGGAAAATGGGGAGCAGAACTAATTTCTACAAGAATCCTTCCATCTCCTACAAGAAGGACTTGCATCTCTCCTCCGCTCTTCAAAATCTGAGAGCGTATAACATTGCTACCGGCAATGCTCCTCCGACCGATGTTCAAGTTCAATCACCTCCTGTCCCTGTCGTGAAGAAGAATGAGAATCGGAAACGCCAACGGGAGCCAGAATTATGTGGTACTCAAATGTATGATGTTGGAAATAGTGACGGCCCTATGTCTCATCAAGATTACATTGAAAGGAGAAGAAAAGAAGCAAATAAATCTCAACCTTATGAGACACTTACGGAAGATGTTTTGGTAGCTTCCAGCTCGGGCTTGAACTTGGTCGACTATGAAAGTGATGAGAGCGTGTCTTCAGATGGTGCAGAAAAGCCAGATGTTCAAAATTCCAGTCTCTTGAATGATTACAAGGAAGTTGAAAGCAAAACTGAGCAACGTTTTGCTGTTGCGGGAGAACCTGTTTGTGTCGTATGCGGTAGATATGGAGAATACATATGTGATGAAACCAATGATGACATTTGCAGCATGGAGTGCAAATTCAAGCTTTTGGAAATTCTTAAACGAGGCGAGGAGTTCCCAAACTGTGAAGTGAAAGATGTTGCCTTACCAGAAAGTAAATATATCCTGCCTTCCCCAGAGTTTGGGGAGGACACCTGGGATTATAAGAACCATCGCTGGTCCAAAAAGAAATCCAATCTTTGTACTTATGAGTGCTGGAAATGTCAAAAACCGGGACACCTTGCTGAAGATTGTTTGGTGAAAACCAGTAACCAGGCAATGCAACAAATGACTTCCAATCCTGTACCTGGTGATCTCCTTGGACTATACAAAAGATGTTACCAGATGGGAAAGAATTTGTCAAATGCACTATGCAATGAATGCAGCTGTTCATATAGTTTGGCGACATGTCTTGATTGTAACACTGTTTACTGTGACAGGTCATTTAAATGAGCATATCCACACACACCCAACTCATGGACTATATTACTCGCATAAACTCAAACGTCTTGTAAAATGCTGCAAATCAACATGCAGGGTGACTCAAATCAAGGATCTTCTAGTGTGTCATTACTGTTTTGATAAAGCTTTCGACAAGTTCTACGATATGTATACTGCATCATGGTA ATGGGGAGCAGAACTAATTTCTACAAGAATCCTTCCATCTCCTACAAGAAGGACTTGCATCTCTCCTCCGCTCTTCAAAATCTGAGAGCGTATAACATTGCTACCGGCAATGCTCCTCCGACCGATGTTCAAGTTCAATCACCTCCTGTCCCTGTCGTGAAGAAGAATGAGAATCGGAAACGCCAACGGGAGCCAGAATTATGTGGTACTCAAATGTATGATGTTGGAAATAGTGACGGCCCTATGTCTCATCAAGATTACATTGAAAGGAGAAGAAAAGAAGCAAATAAATCTCAACCTTATGAGACACTTACGGAAGATGTTTTGGTAGCTTCCAGCTCGGGCTTGAACTTGGTCGACTATGAAAGTGATGAGAGCGTGTCTTCAGATGGTGCAGAAAAGCCAGATGTTCAAAATTCCAGTCTCTTGAATGATTACAAGGAAGTTGAAAGCAAAACTGAGCAACGTTTTGCTGTTGCGGGAGAACCTGTTTGTGTCGTATGCGGTAGATATGGAGAATACATATGTGATGAAACCAATGATGACATTTGCAGCATGGAGTGCAAATTCAAGCTTTTGGAAATTCTTAAACGAGGCGAGGAGTTCCCAAACTGTGAAGTGAAAGATGTTGCCTTACCAGAAAGTAAATATATCCTGCCTTCCCCAGAGTTTGGGGAGGACACCTGGGATTATAAGAACCATCGCTGGTCCAAAAAGAAATCCAATCTTTGTACTTATGAGTGCTGGAAATGTCAAAAACCGGGACACCTTGCTGAAGATTGTTTGGTGAAAACCAGTAACCAGGCAATGCAACAAATGACTTCCAATCCTGTACCTGGTGATCTCCTTGGACTATACAAAAGATGTTACCAGATGGGAAAGAATTTGTCAAATGCACTATGCAATGAATGCAGCTGTTCATATAGTTTGGCGACATGTCTTGATTGTAACACTGTTTACTGTGACAGGTCATTTAAATGA MGSRTNFYKNPSISYKKDLHLSSALQNLRAYNIATGNAPPTDVQVQSPPVPVVKKNENRKRQREPELCGTQMYDVGNSDGPMSHQDYIERRRKEANKSQPYETLTEDVLVASSSGLNLVDYESDESVSSDGAEKPDVQNSSLLNDYKEVESKTEQRFAVAGEPVCVVCGRYGEYICDETNDDICSMECKFKLLEILKRGEEFPNCEVKDVALPESKYILPSPEFGEDTWDYKNHRWSKKKSNLCTYECWKCQKPGHLAEDCLVKTSNQAMQQMTSNPVPGDLLGLYKRCYQMGKNLSNALCNECSCSYSLATCLDCNTVYCDRSFK*
BLAST of Cucsa.301870.1 vs. Swiss-Prot
Match: DDX59_MOUSE (Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 3.2e-13 Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. Swiss-Prot
Match: DDX59_HUMAN (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 3.5e-12 Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. Swiss-Prot
Match: RH41_ARATH (DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana GN=RH41 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 6.1e-12 Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2) HSP 1 Score: 72.8 bits (177), Expect = 7.9e-12 Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. Swiss-Prot
Match: DDX59_RAT (Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus GN=Ddx59 PE=2 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 3.0e-11 Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. TrEMBL
Match: A0A0A0KP93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G161960 PE=4 SV=1) HSP 1 Score: 677.9 bits (1748), Expect = 6.0e-192 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. TrEMBL
Match: A0A061GBD0_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_015986 PE=4 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 1.4e-100 Identity = 183/325 (56.31%), Postives = 236/325 (72.62%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. TrEMBL
Match: A0A0D2QEE9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G213300 PE=4 SV=1) HSP 1 Score: 359.4 bits (921), Expect = 4.7e-96 Identity = 182/326 (55.83%), Postives = 235/326 (72.09%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. TrEMBL
Match: A0A0D2NWC7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G213300 PE=4 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 8.0e-96 Identity = 182/325 (56.00%), Postives = 234/325 (72.00%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. TrEMBL
Match: A0A061G590_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_015986 PE=4 SV=1) HSP 1 Score: 357.8 bits (917), Expect = 1.4e-95 Identity = 183/357 (51.26%), Postives = 236/357 (66.11%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. TAIR10
Match: AT3G02065.2 (AT3G02065.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 73.2 bits (178), Expect = 3.4e-13 Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. NCBI nr
Match: gi|778700032|ref|XP_011654799.1| (PREDICTED: uncharacterized protein LOC101212105 [Cucumis sativus]) HSP 1 Score: 677.9 bits (1748), Expect = 8.6e-192 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. NCBI nr
Match: gi|659073507|ref|XP_008437097.1| (PREDICTED: uncharacterized protein LOC103482617 [Cucumis melo]) HSP 1 Score: 629.4 bits (1622), Expect = 3.5e-177 Identity = 300/322 (93.17%), Postives = 308/322 (95.65%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. NCBI nr
Match: gi|764584629|ref|XP_011464425.1| (PREDICTED: uncharacterized protein LOC101306820 [Fragaria vesca subsp. vesca]) HSP 1 Score: 376.3 bits (965), Expect = 5.3e-101 Identity = 191/328 (58.23%), Postives = 233/328 (71.04%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. NCBI nr
Match: gi|590676881|ref|XP_007039863.1| (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 [Theobroma cacao]) HSP 1 Score: 374.4 bits (960), Expect = 2.0e-100 Identity = 183/325 (56.31%), Postives = 236/325 (72.62%), Query Frame = 1
BLAST of Cucsa.301870.1 vs. NCBI nr
Match: gi|731380243|ref|XP_010662430.1| (PREDICTED: uncharacterized protein LOC100255681 [Vitis vinifera]) HSP 1 Score: 374.0 bits (959), Expect = 2.6e-100 Identity = 187/337 (55.49%), Postives = 235/337 (69.73%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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