Cucsa.301810.7 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.301810.7
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA-binding family protein
Location	scaffold02951 : 73300 .. 78043 (+)
Sequence length	2104

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTAACCGTACTTTGGAGTCCCACCGTCGTCCCCAGCGCGAAACACAAAAACCCTAGCAGTGGCAATTGCCAAGAATCCGCAGGTTTTCTTCAAATCTCTCAATTTTTGTATGTTTCTCTCCTAATTTATAAATTCTTTAGCTATTACCAAGCTTTTGCTTCCAAAATCTTTGGAGTCACGGATCAATTTACAGAGACAGCGAAGTCGGAGAGTGTAGAAACAATCTCTCAAACTTCACAAGAACATCAGCAAACTCAATTACCCGAAGCAATAAGATAATGCGTCAATAGATACAATGGCAACACTGGCAGGTCAACCAACTCACCATCAACCAACTACGGTGGAGGAAGTTAGAACGCTTTGGATAGGGGATTTGCAGTACTGGGTCGATGAGTCTTACCTTAATTCTTGCTTTGCTCACACTGGGGAGGTTCGTTTGTTAGTTTTTTTTtCTTTCTTTCTTATTTATTATTATCTTTGTAACTTTGGTGTTGAATGGTGATGTTTGTAATCATAAATCCATTAGGATTTCATCAGTTTCTCTAGCTGATGACATTGTTGGTATGAAATTTAGATGTGGGTAAGTGGATTTTTGAGATTTTCTACTTTTAGTTAGGTCTTTTCGAATAATTTCTCCTGAAATTGTCTGGTGTTTGGAAGTAAATTTGGGTGTGTAAAATTAGAACGTGTTTGTATTTTGCCCTATTGGTACCGAGATCTGAAATATAGTGTGAGGGAGAGCCTCTCTTATGAACTTTCATGCCACTGAATGGGGATGAGTTTTGATGCACGAGAGCCGTGCTAGTAGAAACACCAATGTATAAAACTATAGTTTTTTATAGTTGTTTTGTTGTTATGTTCCAATACCCCATGCGAATTACGAATGTCTGATGTCTATTTGTTGTTTGTGTTCTAGAATTTGAGTAGGCACTTGTAACTCAGCTGCATTCAGACAAGAACATTCTGTAGTTTGTTGACTATGATATAAAATTTTTAGTACAGGTAATATCAATTAAAATTATTCGCAACAAGATCACTGGCCAGCCTGAAGGTTACGGGTTTGTGGAATTTGTATCTCATGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGAACTCAGATGCCTGGAACAGAGCAAACTTTCAGATTGAATTGGGCCTCCTTTGGAATTGGAGAAAGGCGCCCTGATGCTGGCCCTGAGCACTCTATTTTTGTGGGGGATTTGGCTCCTGATGTTACAGACTATCTGTTGCAAGAGACCTTTAGAGCGCAATATCCATCTGTTAGGGGTGCTAAAGTTGTGACTGATCCAAACACTGGACGTTCAAAGGGATATGGGTTTGTTAAATTTGCTGATGAAAATGAAAGGAATCGAGCTATGTCCGAAATGAATGGTGTTTACTGCTCAACTAGGCCTATGCGTATTAGTGCAGCAACTCCTAAAAAAACCATTGGTGTTCAGCAGCAATACAGTCTAGGTAAAGGTAATGAATAATGAATGTTCAGCATTGCCTTTTCTCTTCTTCATTTTGTTGTCTCACGTTTTCTTGGAGTGAGTACCATCTTTTTTACTATTCATCCATGTCTCCAACGCTTCTATCCAAATAAATAAATCAATCAATCAATTTTCCATTCCAAGTTTCCAGCGCTTCTAGCTTTTCTATTTGCATAATTATATGTTATGCTTCATACCTTTGCTAGTAGTCATAGTCATAGATATTAAACTTTTGGACTTAAAATTTGAATTTCACCTTTGTCTATGGGAGTTCTTTGTTAGATAGTGCTAAGATAATTtTTTTTTTTTTTtGCATCATCAAACCCATAGCTAGTAGTTAATAGGTTTGATCATTCTGAAATTTTAGTTGATATTAGCTAAATTAGTGTTCTTGGGTCTATGATGAAAATGTGTTAAGTTAATTGTTATTAATGTATATGTCAAAAGAGAATTTTTCTCTTATTGAATATTTTGGATAAATATGTTTAATCAATGTCAAAAATATTTTCTAAATGCCATGAGGGGAGAGGATATCTGCAAATTTCAAATAAAAGAGAATTCATTGTTAATGTATTCGTATTTTTTtCCTTTGCCCTTGAAAAAATCTTAGGATGGGATGGTAATTTCCTATTTTAAAACTTGTACTTACCAATGTGTCTCTTGTCTTAGCAATGTACCCAGTTCCAGCGTACACTACATCCGTTCCTGTGCTTCCAGCAGATTATGATGCAAATAACACAACAGTAAGTCAAGGCCAAGTGATAGTTTTACTACGTCTGGTTTCTATGCTCATCTCTTACTATATTGTGCTTTGTGCAGATATTTGTTGGTAACTTGGATCCTAATATTACAGAGGAGGAGTTGAAGCAAACTTTTTTGCAGTTTGGTGAGATTGCTTATGTGAAAATTCCTGCCGGGAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGTGTGTTTGCATGATTAATTTTATTGATGTAAGTTGAGTAAATTGCATCTCTCCTTGCTCCTGTTTCTATGCCTTGAAAGAAGCTTGTGAATAATAATAAGGTTCAGGGAGTGGGGGGAAAACCGTCGTATGGAATAGATGTTAAGTTTTTGTGTATGTACGATTCTCCAAGATATGTTATTGACTTCTTAGTTCACATGAACATTTGGAATTTTGATTTAATATGTTCTCCCTATTGTGTCCGTGCAGGGCTTCAGCTGAAGAAGCTATCCAAAAGATGCAAGGAAAGATAATTGGTCAACAAGTGGTTCGCACTTCTTGGGGTAGAAATCCAGCTGCCAAGCAGGTAATTGTGAACTTCCTATTGAATTCCAGAACAAATATTTTCCTAGATATACCAGCGTACTTTTTCCACTGTGGATGTGATATGTATTTATGAGTTTTTTTAATTCATGCTTTTGCTCGGGTTTAACTTACAAAACCGTGATTGCTCAATGAGTTTGTGCCTAAATCATTAGGTGTGTTTTCTTTTATTTAGCCTGTGAATTTGATATTTCATATTTATGGAAAAATGGCTCACATTCATCTTAGTAAATAATTTTTGCTAAAATACCATTTTGGTCTGTGTACTTTGAGGTTTTTCAATTGCAGTCCATGTATTTTCAATTGTCTAATTTTAGTTCATGTAATTTCAAGAAATCTTAAATTTAGTCTCTCAAATTCTAATGACTCAAAGTACAAGGACTATGTTTATTTTGAACAAACCTCAGAAGTATAAGGACTGGAAGTACATGGACTGTAGATATTTTGAAAGTACAAGAACTCAAATTGCTCAAATACTTTTTTTTTTTtGTGAACGTTACCCTAGTACGGAAATAGGATGTAAAGGAAAGGCCTGGAAAGTGGGGATGAGGTATACCTCAGAAAAGTACAAAGACAATCATCTTACAAACCTTTAGCAGACAGAATCATTTACCTAAACTATAATATATTGTTTTAAATATTTGCTTAGCTAAATGGGTATTTATTGGTACAGGAAAACGACTCCTTGGTAAAATTGATTATGCATGTTATCTTTCTGTTAGCAAGCTCTCACAAGTCACAACAGCCTGTTTAATGCTCATAGTGAACTAGAGCTCACTCTATTAGGTAGACTGATGAAATGGTGATGAAATGGTGATGAATTTCAGGACTTGACTACTTGGGGTCAGCAAGTTGATCCAAACCAGTGGAGCGCTTACTATGGGTATGGAGGGACTTATGATGCTTATGGATATGGAGTTGTACAAGATCCATCTTTATATGGTTATGGTGCTTATTCGGGTTATGCCTCATATCCTCAACAGGTAAGTTTTGTTTtCTTTAGAAGGCAAGAGCTCCATACTCTTCTATGGTAGATAGTGGGCAAAGTGATTGTTATAATCTATTTGTTTGCAGCCATTTTTCAATTGGAGTCTATTGGGTGAATTCTAATTGCCCTTTCAAGATGCTAAGGCTTAGAATCAGAATAAAATGAGTGGGAATCAAGAGCAATATATTTATAGAAAAAGGTTCATCTATCCAGAAAATGTATTTGCCTTTTTGATCTTGGAACTATTCATTTTAACTCTTTTCTTTTAGGTTGACGGCGTACAAGATTTGGCCACAGTAGCTGGTGCGGTCCCTTCCGTAGAACAAGGAGAGGAATGGAATGATACGTTGGATACCCCGGATGTTGATTGGTATGGCTTTCTCTTTTGTCTCTAATTAGCTACAATACAAGATTAGGAATGTACAAGTTTCTATTTTTATTTTAACTTTGCATTGACATCAAGTTGTAAATTTGGCAGTTTAAATGATGCATACCTCTCTAAACATGAAAGCGCTATTTTAGGCTGGCCGTTATGGTTGACTACTTCATCACTGGTTAGGCAAACATGAGTGTGGTTATTGTTTGTCGAAATAGGTTGGCAGCGCGTGAGGGAAACTGGAGAAAAACTACAGTATGTGCTTTATATGCTTGACCATACTCGTAGTTGATGACATTGACCCATTGCATGTATGGTATAATGTGTTTGATTTAATAATACATTTTTTACTATAGGAACGGGGTTGCCAAGGTTATGTGCTTCGATGTTCTATGTATTATGATGGTGCTCTCTACTATTTGGAAATGGAATTTTCATTATCAGGAGAACATCTGCTTTAATCTGTACTGTGTCTCATTATGCTGAAGTGGACTATTTGTATTTTGAACAGGCAGCTTAATTGTTGTCAGATTAAATTTAACAAAAAGAAAATGAAGCTGAAATGAAA

mRNA sequence

TATTAACCGTACTTTGGAGTCCCACCGTCGTCCCCAGCGCGAAACACAAAAACCCTAGCAGTGGCAATTGCCAAGAATCCGCAGAGACAGCGAAGTCGGAGAGTGTAGAAACAATCTCTCAAACTTCACAAGAACATCAGCAAACTCAATTACCCGAAGCAATAAGATAATGCGTCAATAGATACAATGGCAACACTGGCAGGTCAACCAACTCACCATCAACCAACTACGGTGGAGGAAGTTAGAACGCTTTGGATAGGGGATTTGCAGTACTGGGTCGATGAGTCTTACCTTAATTCTTGCTTTGCTCACACTGGGGAGGTAATATCAATTAAAATTATTCGCAACAAGATCACTGGCCAGCCTGAAGGTTACGGGTTTGTGGAATTTGTATCTCATGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGAACTCAGATGCCTGGAACAGAGCAAACTTTCAGATTGAATTGGGCCTCCTTTGGAATTGGAGAAAGGCGCCCTGATGCTGGCCCTGAGCACTCTATTTTTGTGGGGGATTTGGCTCCTGATGTTACAGACTATCTGTTGCAAGAGACCTTTAGAGCGCAATATCCATCTGTTAGGGGTGCTAAAGTTGTGACTGATCCAAACACTGGACGTTCAAAGGGATATGGGTTTGTTAAATTTGCTGATGAAAATGAAAGGAATCGAGCTATGTCCGAAATGAATGGTGTTTACTGCTCAACTAGGCCTATGCGTATTAGTGCAGCAACTCCTAAAAAAACCATTGGTGTTCAGCAGCAATACAGTCTAGGTAAAGCAATGTACCCAGTTCCAGCGTACACTACATCCGTTCCTGTGCTTCCAGCAGATTATGATGCAAATAACACAACAATATTTGTTGGTAACTTGGATCCTAATATTACAGAGGAGGAGTTGAAGCAAACTTTTTTGCAGTTTGGTGAGATTGCTTATGTGAAAATTCCTGCCGGGAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCTTCAGCTGAAGAAGCTATCCAAAAGATGCAAGGAAAGATAATTGGTCAACAAGTGGTTCGCACTTCTTGGGGTAGAAATCCAGCTGCCAAGCAGGACTTGACTACTTGGGGTCAGCAAGTTGATCCAAACCAGTGGAGCGCTTACTATGGGTATGGAGGGACTTATGATGCTTATGGATATGGAGTTGTACAAGATCCATCTTTATATGGTTATGGTGCTTATTCGGGTTATGCCTCATATCCTCAACAGGTAAGTTTTGTTTTCTTTAGAAGGCAAGAGCTCCATACTCTTCTATGGTAGATAGTGGGCAAAGTGATTGTTATAATCTATTTGTTTGCAGCCATTTTTCAATTGGAGTCTATTGGGTGAATTCTAATTGCCCTTTCAAGATGCTAAGGCTTAGAATCAGAATAAAATGAGTGGGAATCAAGAGCAATATATTTATAGAAAAAGGTTCATCTATCCAGAAAATGTATTTGCCTTTTTGATCTTGGAACTATTCATTTTAACTCTTTTCTTTTAGGTTGACGGCGTACAAGATTTGGCCACAGTAGCTGGTGCGGTCCCTTCCGTAGAACAAGGAGAGGAATGGAATGATACGTTGGATACCCCGGATGTTGATTGTTTAAATGATGCATACCTCTCTAAACATGAAAGCGCTATTTTAGGCTGGCCGTTATGGTTGACTACTTCATCACTGGTTAGGCAAACATGAGTGTGGTTATTGTTTGTCGAAATAGGTTGGCAGCGCGTGAGGGAAACTGGAGAAAAACTACAGTATGTGCTTTATATGCTTGACCATACTCGTAGTTGATGACATTGACCCATTGCATGTATGGTATAATGTGTTTGATTTAATAATACATTTTTTACTATAGGAACGGGGTTGCCAAGGTTATGTGCTTCGATGTTCTATGTATTATGATGGTGCTCTCTACTATTTGGAAATGGAATTTTCATTATCAGGAGAACATCTGCTTTAATCTGTACTGTGTCTCATTATGCTGAAGTGGACTATTTGTATTTTGAACAGGCAGCTTAATTGTTGTCAGATTAAATTTAACAAAAAGAAAATGAAGCTGAAATGAAA

Coding sequence (CDS)

ATGGCAACACTGGCAGGTCAACCAACTCACCATCAACCAACTACGGTGGAGGAAGTTAGAACGCTTTGGATAGGGGATTTGCAGTACTGGGTCGATGAGTCTTACCTTAATTCTTGCTTTGCTCACACTGGGGAGGTAATATCAATTAAAATTATTCGCAACAAGATCACTGGCCAGCCTGAAGGTTACGGGTTTGTGGAATTTGTATCTCATGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGAACTCAGATGCCTGGAACAGAGCAAACTTTCAGATTGAATTGGGCCTCCTTTGGAATTGGAGAAAGGCGCCCTGATGCTGGCCCTGAGCACTCTATTTTTGTGGGGGATTTGGCTCCTGATGTTACAGACTATCTGTTGCAAGAGACCTTTAGAGCGCAATATCCATCTGTTAGGGGTGCTAAAGTTGTGACTGATCCAAACACTGGACGTTCAAAGGGATATGGGTTTGTTAAATTTGCTGATGAAAATGAAAGGAATCGAGCTATGTCCGAAATGAATGGTGTTTACTGCTCAACTAGGCCTATGCGTATTAGTGCAGCAACTCCTAAAAAAACCATTGGTGTTCAGCAGCAATACAGTCTAGGTAAAGCAATGTACCCAGTTCCAGCGTACACTACATCCGTTCCTGTGCTTCCAGCAGATTATGATGCAAATAACACAACAATATTTGTTGGTAACTTGGATCCTAATATTACAGAGGAGGAGTTGAAGCAAACTTTTTTGCAGTTTGGTGAGATTGCTTATGTGAAAATTCCTGCCGGGAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCTTCAGCTGAAGAAGCTATCCAAAAGATGCAAGGAAAGATAATTGGTCAACAAGTGGTTCGCACTTCTTGGGGTAGAAATCCAGCTGCCAAGCAGGACTTGACTACTTGGGGTCAGCAAGTTGATCCAAACCAGTGGAGCGCTTACTATGGGTATGGAGGGACTTATGATGCTTATGGATATGGAGTTGTACAAGATCCATCTTTATATGGTTATGGTGCTTATTCGGGTTATGCCTCATATCCTCAACAGGTAAGTTTTGTTTtCTTTAGAAGGCAAGAGCTCCATACTCTTCTATGGTAG

Protein sequence

MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVSFVFFRRQELHTLLW*

Homology

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BLAST of Cucsa.301810.7 vs. Swiss-Prot
Match: R47BP_ARATH (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 1.6e-146
Identity = 256/358 (71.51%), Postives = 290/358 (81.01%), Query Frame = 1


Query: 7   QPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFV 66
           Q ++H P T+EEVRTLWIGDLQYWVDE+YL SCF+ TGE++S+K+IRNKITGQPEGYGF+
Sbjct: 11  QGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFI 70

Query: 67  EFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 126
           EF+SHAAAER LQTYNGTQMPGTE TFRLNWASFG G++  DAGP+HSIFVGDLAPDVTD
Sbjct: 71  EFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTD 130

Query: 127 YLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMR 186
           YLLQETFR  Y SVRGAKVVTDP+TGRSKGYGFVKFA+E+ERNRAM+EMNG+YCSTRPMR
Sbjct: 131 YLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMR 190

Query: 187 ISAATPKKTIGVQQQYSLGKAMYPVP-----AYTTSVPVLPADYDANNTTIFVGNLDPNI 246
           ISAATPKK +GVQQQY + KA+YPV      A      V P + D   TTI V NLD N+
Sbjct: 191 ISAATPKKNVGVQQQY-VTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNV 250

Query: 247 TEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGR 306
           TEEELK+ F Q GE+ YVKIPA KG G+VQF TR SAEEA+Q+MQG++IGQQ VR SW +
Sbjct: 251 TEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 310

Query: 307 NPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           NP   QD   W  Q DPNQW+ YYGYG  YDAY YG  QDPS+Y YG Y GY  YPQQ
Sbjct: 311 NPG--QD--GWVTQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGY-GYPQYPQQ 361

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BLAST of Cucsa.301810.7 vs. Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 6.1e-117
Identity = 223/361 (61.77%), Postives = 261/361 (72.30%), Query Frame = 1


Query: 1   MATLAGQPTHHQPT-TVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQ 60
           MAT    P+   PT    EVR+LWIGDLQYW+DE+YL++CF HTGE++S K+IRNK TGQ
Sbjct: 67  MATTNPNPS---PTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQ 126

Query: 61  PEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGD 120
            EGYGF+EF SHAAAE ILQTYNGT MP  EQ FR+NWAS G GERR D+  EH+IFVGD
Sbjct: 127 SEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA-EHTIFVGD 186

Query: 121 LAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVY 180
           LA DVTDY+LQETF++ Y SVRGAKVVTD  TGRSKGYGFVKFADE+E+ RAM+EMNGV 
Sbjct: 187 LAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVL 246

Query: 181 CSTRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDP 240
           CSTRPMRI  A  KK +G  Q     KA Y  P  T        + D NNTTIFVG LDP
Sbjct: 247 CSTRPMRIGPAANKKPVGTPQ-----KATYQNPQAT------QGESDPNNTTIFVGGLDP 306

Query: 241 NITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSW 300
            + EE L+Q F  +GE+ +VKI AGK CGFVQFGTRASAE+A+  + G  +G Q +R SW
Sbjct: 307 TVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSW 366

Query: 301 GRNPAAKQ-DLTTWGQQVDPNQWSAYYGYGGTYDAYGYG-VVQDPSLYGYGAYSGYASYP 359
           GR+P++KQ D T WG         AYYGYG  Y+AYGY    QDP++Y YG Y GYA+Y 
Sbjct: 367 GRSPSSKQTDQTQWG-----GSGGAYYGYGQGYEAYGYAPPAQDPNMY-YGNYPGYANYQ 406

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BLAST of Cucsa.301810.7 vs. Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.5e-110
Identity = 210/364 (57.69%), Postives = 261/364 (71.70%), Query Frame = 1


Query: 8   PTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVE 67
           PT  Q ++ E+ +T+WIGDLQ W+DESYL+SCF+  GEVIS+KIIRNK TGQ E YGFVE
Sbjct: 73  PTQIQSSS-EDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVE 132

Query: 68  FVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDY 127
           F +HAAAE++LQ+YNGT MP TEQ FRLNWA F  GE+R + G + SIFVGDLA DVTD 
Sbjct: 133 FNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDT 192

Query: 128 LLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRI 187
           +L++TF ++YPS++GAKVV D NTG SKGYGFV+F DE+ER+RAM+EMNGVYCS+R MRI
Sbjct: 193 MLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRI 252

Query: 188 SAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVL---PADYDANNTTIFVGNLDPNITEE 247
             ATPKK     +QYS  +A+     Y ++        +D D++NTTIFVG LD  +T+E
Sbjct: 253 GVATPKKP-SAHEQYS-SQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDE 312

Query: 248 ELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPA 307
           EL+Q+F QFGE+  VKIPAGKGCGFVQF  R+SA+EAIQK+ G IIG+Q VR SWGR+PA
Sbjct: 313 ELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPA 372

Query: 308 AKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVV--QDPSLYGYGAYSG-----YASYP 362
            KQ  T  G     +QW+  Y     Y  YGYG    QD  +Y  GA  G     Y ++ 
Sbjct: 373 NKQMRTDSG-----SQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQ 428

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BLAST of Cucsa.301810.7 vs. Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 2.8e-106
Identity = 197/349 (56.45%), Postives = 249/349 (71.35%), Query Frame = 1


Query: 5   AGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYG 64
           A  P   QPTT +E+RTLWIGDLQYW+DE++L  CFAHTGE++S K+IRNK TGQ EGYG
Sbjct: 47  AAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106

Query: 65  FVEFVSHAAAERILQTYNGTQMPG-TEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPD 124
           F+EF SHAAAER+LQT+N   +P   +Q FRLNWAS   G++R D+ P+++IFVGDLA D
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAAD 166

Query: 125 VTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTR 184
           VTDY+L ETFRA YPSV+GAKVV D  TGR+KGYGFV+F+DE+E+ RAM+EMNGV CSTR
Sbjct: 167 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTR 226

Query: 185 PMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITE 244
           PMRI  A  KK +  Q+            +Y +S   +  D D NNTT+FVG LD ++T+
Sbjct: 227 PMRIGPAASKKGVTGQRD-----------SYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 286

Query: 245 EELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNP 304
           + LK  F Q+GEI +VKIPAGK CGFVQF  ++ AEEA++ + G  +G   VR SWGR+P
Sbjct: 287 DHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSP 346

Query: 305 AAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSG 353
           + K       Q  DP+Q+  Y GYG   + YGY + QDP+ Y YG YSG
Sbjct: 347 SNK-------QSGDPSQF-YYGGYGQGQEQYGYTMPQDPNAY-YGGYSG 374

[Close]

BLAST of Cucsa.301810.7 vs. Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 3.5e-104
Identity = 195/353 (55.24%), Postives = 238/353 (67.42%), Query Frame = 1


Query: 13  PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
           P +  +V++LWIGDLQ W+DE+Y+ S FA +GE  S K+IRNK+TGQ EGYGF+EFVSH+
Sbjct: 53  PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHS 112

Query: 73  AAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDYLLQE 132
            AER+LQTYNG  MP TEQTFRLNWA  G GE+R    GP+H+IFVGDLAP+VTDY+L +
Sbjct: 113 VAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSD 172

Query: 133 TFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAAT 192
           TF+  Y SV+GAKVV D  TGRSKGYGFV+FADENE+ RAM+EMNG YCSTRPMRI  A 
Sbjct: 173 TFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA 232

Query: 193 PKKTIGVQQQYSLGKAMYPVPA-YTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTF 252
            K  + +Q            PA Y  +      D D NNTTIFVG LD N+T++ELK  F
Sbjct: 233 NKNALPMQ------------PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIF 292

Query: 253 LQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLT 312
            QFGE+ +VKIP GK CGFVQ+  +ASAE A+  + G  +G Q +R SWGR+P  + D  
Sbjct: 293 GQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQA 352

Query: 313 TWGQQVDPNQWSAYYGY-GGTYDAYGYGV---VQDPSLYGYGAYSGYASYPQQ 360
            W           YYGY       YGY      QDP+ Y YG Y+GY +Y QQ
Sbjct: 353 QW-------NGGGYYGYPPQPQGGYGYAAQPPTQDPNAY-YGGYTGYGNYQQQ 385

[Close]

BLAST of Cucsa.301810.7 vs. TrEMBL
Match: A0A0A0KKV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162020 PE=4 SV=1)

HSP 1 Score: 644.4 bits (1661), Expect = 8.4e-182
Identity = 323/364 (88.74%), Postives = 328/364 (90.11%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTT+   N    
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTLVNNNKVQG 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGF-VQFGTRASAEEAIQKMQGKIIGQQVVRTSW 300
           +            G+ +Y         G  V+F   ASAEEAIQKMQGKIIGQQVVRTSW
Sbjct: 241 VG-----------GKPSY---------GIDVKFLCMASAEEAIQKMQGKIIGQQVVRTSW 300

Query: 301 GRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           GRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ
Sbjct: 301 GRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 344

Query: 361 VSFV 364
           V  V
Sbjct: 361 VDGV 344

[Close]

BLAST of Cucsa.301810.7 vs. TrEMBL
Match: W9SPF1_9ROSA (Polyadenylate-binding protein RBP47B OS=Morus notabilis GN=L484_017881 PE=4 SV=1)

HSP 1 Score: 633.3 bits (1632), Expect = 1.9e-178
Identity = 301/355 (84.79%), Postives = 325/355 (91.55%), Query Frame = 1


Query: 10  HHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFV 69
           HHQPTTVEEVRTLWIGDLQ+WVDE+YLNSCF+HTGEV+SIKIIRNKITGQPEGYGFVEFV
Sbjct: 26  HHQPTTVEEVRTLWIGDLQFWVDENYLNSCFSHTGEVVSIKIIRNKITGQPEGYGFVEFV 85

Query: 70  SHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPD-AGPEHSIFVGDLAPDVTDYL 129
           SHAAAERILQ+YNGT+MPGTEQTFRLNWASFGIGERRPD AG EHSIFVGDLAPDVTDYL
Sbjct: 86  SHAAAERILQSYNGTKMPGTEQTFRLNWASFGIGERRPDAAGVEHSIFVGDLAPDVTDYL 145

Query: 130 LQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRIS 189
           LQETFR QYPSVRGAKVVTDPNTGRSKGYGFVKF+DE+ERNRAM+EMNGVYCSTRPMRIS
Sbjct: 146 LQETFRVQYPSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMTEMNGVYCSTRPMRIS 205

Query: 190 AATPKKTIGVQQQYSLGKAMYPVPAYTT-SVPVLPADYDANNTTIFVGNLDPNITEEELK 249
           AATPKKT G QQQY+  KA+YP PAYTT +VP +PADYD NNTTIFVGNLDPN++EEELK
Sbjct: 206 AATPKKTTGFQQQYAAAKAVYPYPAYTTPAVPAVPADYDTNNTTIFVGNLDPNVSEEELK 265

Query: 250 QTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQ 309
           QTFL FGEI YVKIP GKGCGF+QFG R SAEEAIQKMQGK+IGQQ+VR SWGR+P AKQ
Sbjct: 266 QTFLHFGEIVYVKIPMGKGCGFIQFGARTSAEEAIQKMQGKMIGQQIVRVSWGRSPTAKQ 325

Query: 310 DLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVS 362
           D + +WGQQVDP+QWSAYYGYG  YDAY YG   DPSLY Y AY+GY+ YPQQ S
Sbjct: 326 DASGSWGQQVDPSQWSAYYGYGQGYDAYAYGATHDPSLYAYSAYAGYSQYPQQAS 380

[Close]

BLAST of Cucsa.301810.7 vs. TrEMBL
Match: M5WM59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005940mg PE=4 SV=1)

HSP 1 Score: 620.9 bits (1600), Expect = 1.0e-174
Identity = 301/359 (83.84%), Postives = 322/359 (89.69%), Query Frame = 1


Query: 7   QPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFV 66
           Q  HHQPT+VEEVRTLWIGDLQYWVDE+YL +CFAHTGEVISIKIIRNKITGQPEGYGFV
Sbjct: 20  QHHHHQPTSVEEVRTLWIGDLQYWVDENYLTTCFAHTGEVISIKIIRNKITGQPEGYGFV 79

Query: 67  EFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 126
           EFVSHAAAER+L  YNGT MPGTEQ FRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD
Sbjct: 80  EFVSHAAAERVLHAYNGTLMPGTEQNFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 139

Query: 127 YLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMR 186
           ++LQETFR QY SVRGAKVVTDPNTGRSKGYGFVKFADE ERNRAM+EMNGVYCSTR MR
Sbjct: 140 FMLQETFRTQYSSVRGAKVVTDPNTGRSKGYGFVKFADETERNRAMTEMNGVYCSTRQMR 199

Query: 187 ISAATPKKTIGVQQQYSLGKAMYPVPAYTT-SVPVLPADYDANNTTIFVGNLDPNITEEE 246
           ISAATPKKT G QQQY   K +YP PAYTT +VPVLPADYDANNTTIFVGNLDPN+TEEE
Sbjct: 200 ISAATPKKTTGFQQQYGATK-VYPNPAYTTPAVPVLPADYDANNTTIFVGNLDPNVTEEE 259

Query: 247 LKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAA 306
           LKQ+F+QFGEI YVKIP GKGCGFVQFGTRASAEEAIQ+MQG +IGQQVVR SWGR+P A
Sbjct: 260 LKQSFMQFGEIPYVKIPVGKGCGFVQFGTRASAEEAIQRMQGMMIGQQVVRISWGRSPTA 319

Query: 307 KQDLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVSFV 364
           KQD+  ++ QQVDP+QW+AYYGYG  YDAY YG  QDPSLY YGAY+GY  YPQQV  V
Sbjct: 320 KQDVPGSFAQQVDPSQWAAYYGYGQGYDAYAYGATQDPSLYAYGAYAGYGQYPQQVEGV 377

[Close]

BLAST of Cucsa.301810.7 vs. TrEMBL
Match: A0A061GTF5_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 3.8e-174
Identity = 294/361 (81.44%), Postives = 319/361 (88.37%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MAT+A    HH PT++EEVRTLWIGDLQ+WVDESYLNSCFAHTGE++SIKIIRNKITGQP
Sbjct: 1   MATIAASQHHHHPTSLEEVRTLWIGDLQFWVDESYLNSCFAHTGELVSIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGT MPGT+Q FRLNWASFGIGERR D GPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTPMPGTDQMFRLNWASFGIGERRTDPGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRA YPSVRGAKVVTDPNTGRSKGYGFVKF+DE ERNRAM+EMNGVYC
Sbjct: 121 APDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDEIERNRAMTEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STR MRISAATPKK  G QQQY++ KA+YP PAYTT V VLP D D+ NTTIF+GNLDPN
Sbjct: 181 STRAMRISAATPKKPTGFQQQYAVAKAVYPAPAYTTPVQVLPPDNDSTNTTIFIGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           +TEEELKQ F   G+I YVKIPA KGCGFVQF TR SAEEAIQ+MQG++IGQQ+VR SWG
Sbjct: 241 VTEEELKQLFSPLGDIVYVKIPAAKGCGFVQFATRTSAEEAIQRMQGQMIGQQLVRISWG 300

Query: 301 RNPAAKQDLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           R+P AKQDL  +WG Q DP+QWSAYYGYG +YDAY YG  QDPSLY YGAY+GYA YPQQ
Sbjct: 301 RSPTAKQDLPGSWGTQADPSQWSAYYGYGQSYDAYAYGATQDPSLYAYGAYAGYAQYPQQ 360

[Close]

BLAST of Cucsa.301810.7 vs. TrEMBL
Match: D7SL59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02040 PE=4 SV=1)

HSP 1 Score: 618.6 bits (1594), Expect = 4.9e-174
Identity = 301/366 (82.24%), Postives = 325/366 (88.80%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           ++++A    + QPT+VEEVRTLWIGDLQYWVDE+YL+SCFAHTGEVISIKIIRNKITGQP
Sbjct: 22  VSSMASAQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQP 81

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQ YNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 82  EGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 141

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGR+KGYGFVKF+DE ERNRAM+EMNGVYC
Sbjct: 142 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYC 201

Query: 181 STRPMRISAATPKKTIGVQQQY-SLGKAMYPVPAYTT-SVPVLPADYDANNTTIFVGNLD 240
           STRPMRISAATPKKT G QQQY +  KA+YP PAYTT  +  LPAD D NNTTIFVGNLD
Sbjct: 202 STRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLD 261

Query: 241 PNITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTS 300
           PN+TEEELKQ F QFGE+ YVKIPAG+GCGFVQFGTR SAEEAIQ+MQG +IGQ VVR S
Sbjct: 262 PNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRIS 321

Query: 301 WGRNPAAKQDLT-TWGQQVDPNQW-SAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASY 360
           WGR+P AKQDL  +WGQQ DP+QW SAYYGYG  YDAY YG  QDPSLY YGAY+GY  Y
Sbjct: 322 WGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDAYPYGATQDPSLYAYGAYAGYLQY 381

Query: 361 PQQVSF 363
           PQQ  +
Sbjct: 382 PQQARY 387

[Close]

BLAST of Cucsa.301810.7 vs. TAIR10
Match: AT5G19350.1 (AT5G19350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 520.4 bits (1339), Expect = 9.3e-148
Identity = 256/358 (71.51%), Postives = 290/358 (81.01%), Query Frame = 1


Query: 7   QPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFV 66
           Q ++H P T+EEVRTLWIGDLQYWVDE+YL SCF+ TGE++S+K+IRNKITGQPEGYGF+
Sbjct: 11  QGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFI 70

Query: 67  EFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 126
           EF+SHAAAER LQTYNGTQMPGTE TFRLNWASFG G++  DAGP+HSIFVGDLAPDVTD
Sbjct: 71  EFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTD 130

Query: 127 YLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMR 186
           YLLQETFR  Y SVRGAKVVTDP+TGRSKGYGFVKFA+E+ERNRAM+EMNG+YCSTRPMR
Sbjct: 131 YLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMR 190

Query: 187 ISAATPKKTIGVQQQYSLGKAMYPVP-----AYTTSVPVLPADYDANNTTIFVGNLDPNI 246
           ISAATPKK +GVQQQY + KA+YPV      A      V P + D   TTI V NLD N+
Sbjct: 191 ISAATPKKNVGVQQQY-VTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNV 250

Query: 247 TEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGR 306
           TEEELK+ F Q GE+ YVKIPA KG G+VQF TR SAEEA+Q+MQG++IGQQ VR SW +
Sbjct: 251 TEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 310

Query: 307 NPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           NP   QD   W  Q DPNQW+ YYGYG  YDAY YG  QDPS+Y YG Y GY  YPQQ
Sbjct: 311 NPG--QD--GWVTQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGY-GYPQYPQQ 361

[Close]

BLAST of Cucsa.301810.7 vs. TAIR10
Match: AT1G11650.2 (AT1G11650.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 386.7 bits (992), Expect = 1.6e-107
Identity = 197/349 (56.45%), Postives = 249/349 (71.35%), Query Frame = 1


Query: 5   AGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYG 64
           A  P   QPTT +E+RTLWIGDLQYW+DE++L  CFAHTGE++S K+IRNK TGQ EGYG
Sbjct: 47  AAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106

Query: 65  FVEFVSHAAAERILQTYNGTQMPG-TEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPD 124
           F+EF SHAAAER+LQT+N   +P   +Q FRLNWAS   G++R D+ P+++IFVGDLA D
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAAD 166

Query: 125 VTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTR 184
           VTDY+L ETFRA YPSV+GAKVV D  TGR+KGYGFV+F+DE+E+ RAM+EMNGV CSTR
Sbjct: 167 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTR 226

Query: 185 PMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITE 244
           PMRI  A  KK +  Q+            +Y +S   +  D D NNTT+FVG LD ++T+
Sbjct: 227 PMRIGPAASKKGVTGQRD-----------SYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 286

Query: 245 EELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNP 304
           + LK  F Q+GEI +VKIPAGK CGFVQF  ++ AEEA++ + G  +G   VR SWGR+P
Sbjct: 287 DHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSP 346

Query: 305 AAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSG 353
           + K       Q  DP+Q+  Y GYG   + YGY + QDP+ Y YG YSG
Sbjct: 347 SNK-------QSGDPSQF-YYGGYGQGQEQYGYTMPQDPNAY-YGGYSG 374

[Close]

BLAST of Cucsa.301810.7 vs. TAIR10
Match: AT5G54900.1 (AT5G54900.1 RNA-binding protein 45A)

HSP 1 Score: 379.8 bits (974), Expect = 2.0e-105
Identity = 195/353 (55.24%), Postives = 238/353 (67.42%), Query Frame = 1


Query: 13  PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
           P +  +V++LWIGDLQ W+DE+Y+ S FA +GE  S K+IRNK+TGQ EGYGF+EFVSH+
Sbjct: 53  PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHS 112

Query: 73  AAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDYLLQE 132
            AER+LQTYNG  MP TEQTFRLNWA  G GE+R    GP+H+IFVGDLAP+VTDY+L +
Sbjct: 113 VAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSD 172

Query: 133 TFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAAT 192
           TF+  Y SV+GAKVV D  TGRSKGYGFV+FADENE+ RAM+EMNG YCSTRPMRI  A 
Sbjct: 173 TFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA 232

Query: 193 PKKTIGVQQQYSLGKAMYPVPA-YTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTF 252
            K  + +Q            PA Y  +      D D NNTTIFVG LD N+T++ELK  F
Sbjct: 233 NKNALPMQ------------PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIF 292

Query: 253 LQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLT 312
            QFGE+ +VKIP GK CGFVQ+  +ASAE A+  + G  +G Q +R SWGR+P  + D  
Sbjct: 293 GQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQA 352

Query: 313 TWGQQVDPNQWSAYYGY-GGTYDAYGYGV---VQDPSLYGYGAYSGYASYPQQ 360
            W           YYGY       YGY      QDP+ Y YG Y+GY +Y QQ
Sbjct: 353 QW-------NGGGYYGYPPQPQGGYGYAAQPPTQDPNAY-YGGYTGYGNYQQQ 385

[Close]

BLAST of Cucsa.301810.7 vs. TAIR10
Match: AT1G47500.1 (AT1G47500.1 RNA-binding protein 47C')

HSP 1 Score: 378.6 bits (971), Expect = 4.4e-105
Identity = 205/357 (57.42%), Postives = 247/357 (69.19%), Query Frame = 1


Query: 11  HQPTTVEEVRTLWIGDLQYWVDESYLNSCF--AHTGEVISIKIIRNKITGQPEGYGFVEF 70
           HQ     E +T+W+GDLQ W+DE+YLNS F  A   E++S+K+IRNK  G  EGYGFVEF
Sbjct: 94  HQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEF 153

Query: 71  VSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDY 130
            SH  A+++LQ +NG  MP T+Q FRLNWASF  GE+R  + GP+ SIFVGDLAPDV+D 
Sbjct: 154 ESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDA 213

Query: 131 LLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRI 190
           LL ETF  +YPSV+ AKVV D NTGRSKGYGFV+F DENER +AM+EMNGV CS+R MRI
Sbjct: 214 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273

Query: 191 SAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELK 250
             ATP+KT G QQQ        P  A+T S      + D  NTTIFVG LD ++T+E+LK
Sbjct: 274 GPATPRKTNGYQQQ----GGYMPSGAFTRS------EGDTINTTIFVGGLDSSVTDEDLK 333

Query: 251 QTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQ 310
           Q F +FGEI  VKIP GKGCGFVQF  R +AEEA++K+ G +IG+Q VR SWGRNPA KQ
Sbjct: 334 QPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 393

Query: 311 DLTTWGQQ-VDPNQWSAYYGYGGTYDAYGYGVVQ-DPSLYGYGA-YSGYASYPQQVS 362
               +G Q VDP     YYG G  Y+ YGY V Q DP +Y     Y  Y  + QQVS
Sbjct: 394 PRDKYGNQWVDP-----YYG-GQFYNGYGYMVPQPDPRMYPAAPYYPMYGGHQQQVS 434

[Close]

BLAST of Cucsa.301810.7 vs. TAIR10
Match: AT1G47490.1 (AT1G47490.1 RNA-binding protein 47C)

HSP 1 Score: 373.6 bits (958), Expect = 1.4e-103
Identity = 200/357 (56.02%), Postives = 246/357 (68.91%), Query Frame = 1


Query: 11  HQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGE--VISIKIIRNKITGQPEGYGFVEF 70
           HQ     E +T+W+GDL +W+DE+YLNS FA   E  ++S+K+IRNK  G  EGYGFVEF
Sbjct: 92  HQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEF 151

Query: 71  VSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDY 130
            SH  A+++L+ +NGT MP T+Q FRLNWASF  GE+R  + GP+ SIFVGDL+PDV+D 
Sbjct: 152 ESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDN 211

Query: 131 LLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRI 190
           LL ETF  +YPSV+ AKVV D NTGRSKGYGFV+F DENER +AM+EMNGV CS+R MRI
Sbjct: 212 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271

Query: 191 SAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELK 250
             ATP+KT G QQQ            Y  +  +   + D  NTTIFVG LD ++T+E+LK
Sbjct: 272 GPATPRKTNGYQQQ----------GGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLK 331

Query: 251 QTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQ 310
           Q F +FGEI  VKIP GKGCGFVQF  R +AEEA++K+ G +IG+Q VR SWGRNPA KQ
Sbjct: 332 QPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 391

Query: 311 DLTTWGQQ-VDPNQWSAYYGYGGTYDAYGYGVVQ-DPSLYGYGA-YSGYASYPQQVS 362
               +G Q VDP     YYG G  Y+ YGY V Q DP +Y     Y  Y  + QQVS
Sbjct: 392 PRDKYGNQWVDP-----YYG-GQFYNGYGYMVPQPDPRMYPAAPYYPMYGGHQQQVS 432

[Close]

BLAST of Cucsa.301810.7 vs. NCBI nr
Match: gi|449469386|ref|XP_004152401.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis sativus])

HSP 1 Score: 746.1 bits (1925), Expect = 2.9e-212
Identity = 361/363 (99.45%), Postives = 361/363 (99.45%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV 360
           RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV
Sbjct: 301 RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV 360

Query: 361 SFV 364
             V
Sbjct: 361 DGV 363

[Close]

BLAST of Cucsa.301810.7 vs. NCBI nr
Match: gi|659073474|ref|XP_008437079.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis melo])

HSP 1 Score: 741.9 bits (1914), Expect = 5.6e-211
Identity = 359/363 (98.90%), Postives = 359/363 (98.90%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV 360
           RNPAAKQDL TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLY YGAYSGYASYPQQV
Sbjct: 301 RNPAAKQDLATWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYAYGAYSGYASYPQQV 360

Query: 361 SFV 364
             V
Sbjct: 361 DGV 363

[Close]

BLAST of Cucsa.301810.7 vs. NCBI nr
Match: gi|778700063|ref|XP_011654802.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis sativus])

HSP 1 Score: 740.0 bits (1909), Expect = 2.1e-210
Identity = 361/368 (98.10%), Postives = 361/368 (98.10%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQ-----DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360
           RNPAAKQ     DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS
Sbjct: 301 RNPAAKQENDSLDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360

Query: 361 YPQQVSFV 364
           YPQQV  V
Sbjct: 361 YPQQVDGV 368

[Close]

BLAST of Cucsa.301810.7 vs. NCBI nr
Match: gi|778700080|ref|XP_011654806.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X4 [Cucumis sativus])

HSP 1 Score: 738.8 bits (1906), Expect = 4.7e-210
Identity = 360/367 (98.09%), Postives = 360/367 (98.09%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQ-----DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360
           RNPAAKQ     DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS
Sbjct: 301 RNPAAKQENDSLDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360

Query: 361 YPQQVSF 363
           YPQQ  F
Sbjct: 361 YPQQPFF 367

[Close]

BLAST of Cucsa.301810.7 vs. NCBI nr
Match: gi|659073468|ref|XP_008437076.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis melo])

HSP 1 Score: 735.7 bits (1898), Expect = 4.0e-209
Identity = 359/368 (97.55%), Postives = 359/368 (97.55%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQ-----DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360
           RNPAAKQ     DL TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLY YGAYSGYAS
Sbjct: 301 RNPAAKQEIDSLDLATWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYAYGAYSGYAS 360

Query: 361 YPQQVSFV 364
           YPQQV  V
Sbjct: 361 YPQQVDGV 368

The following BLAST results are available for this feature:

BLAST of Cucsa.301810.7 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R47BP_ARATH	1.6e-146	71.51	Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV...	[more]
RBP45_NICPL	6.1e-117	61.77	Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 S...	[more]
RBP47_NICPL	1.5e-110	57.69	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 S...	[more]
RB45B_ARATH	2.8e-106	56.45	Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1	[more]
RB45A_ARATH	3.5e-104	55.24	Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1	[more]

BLAST of Cucsa.301810.7 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKV7_CUCSA	8.4e-182	88.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162020 PE=4 SV=1	[more]
W9SPF1_9ROSA	1.9e-178	84.79	Polyadenylate-binding protein RBP47B OS=Morus notabilis GN=L484_017881 PE=4 SV=1	[more]
M5WM59_PRUPE	1.0e-174	83.84	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005940mg PE=4 SV=1	[more]
A0A061GTF5_THECC	3.8e-174	81.44	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1	[more]
D7SL59_VITVI	4.9e-174	82.24	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02040 PE=4 SV=...	[more]

BLAST of Cucsa.301810.7 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19350.1	9.3e-148	71.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G11650.2	1.6e-107	56.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54900.1	2.0e-105	55.24	RNA-binding protein 45A	[more]
AT1G47500.1	4.4e-105	57.42	RNA-binding protein 47C'	[more]
AT1G47490.1	1.4e-103	56.02	RNA-binding protein 47C	[more]

BLAST of Cucsa.301810.7 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469386\|ref\|XP_004152401.1\|	2.9e-212	99.45	PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis sativus]	[more]
gi\|659073474\|ref\|XP_008437079.1\|	5.6e-211	98.90	PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis melo]	[more]
gi\|778700063\|ref\|XP_011654802.1\|	2.1e-210	98.10	PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis sativus]	[more]
gi\|778700080\|ref\|XP_011654806.1\|	4.7e-210	98.09	PREDICTED: polyadenylate-binding protein RBP47B' isoform X4 [Cucumis sativus]	[more]
gi\|659073468\|ref\|XP_008437076.1\|	4.0e-209	97.55	PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.301810	Cucsa.301810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.7	Cucsa.301810.7-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.7.five_prime_UTR.1	Cucsa.301810.7.five_prime_UTR.1	five_prime_UTR
Cucsa.301810.7.five_prime_UTR.2	Cucsa.301810.7.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.7.CDS.1	Cucsa.301810.7.CDS.1	CDS
Cucsa.301810.7.CDS.2	Cucsa.301810.7.CDS.2	CDS
Cucsa.301810.7.CDS.3	Cucsa.301810.7.CDS.3	CDS
Cucsa.301810.7.CDS.4	Cucsa.301810.7.CDS.4	CDS
Cucsa.301810.7.CDS.5	Cucsa.301810.7.CDS.5	CDS
Cucsa.301810.7.CDS.6	Cucsa.301810.7.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.7.three_prime_UTR.1	Cucsa.301810.7.three_prime_UTR.1	three_prime_UTR
Cucsa.301810.7.three_prime_UTR.2	Cucsa.301810.7.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 22..90 score: 1.2E-14coord: 115..180 score: 1.3E-16coord: 232..295 score: 3.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 231..298 score: 1.3E-22coord: 21..96 score: 2.8E-14coord: 114..188 score: 3.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 20..100 score: 15.409coord: 113..192 score: 17.455coord: 230..302 score: 17
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 7..99 score: 5.0E-21coord: 106..195 score: 1.2E-22coord: 222..316 score: 1.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 112..304 score: 1.29E-44coord: 8..88 score: 6.99
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 90..362 score: 3.0E
None	No IPR available	PANTHER	PTHR24012:SF333	POLYADENYLATE-BINDING PROTEIN RBP45B-RELATED	coord: 90..362 score: 3.0E