Cucsa.301810.4 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.301810.4
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA-binding family protein
Location	scaffold02951 : 73300 .. 78038 (+)
Sequence length	1718

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTAACCGTACTTTGGAGTCCCACCGTCGTCCCCAGCGCGAAACACAAAAACCCTAGCAGTGGCAATTGCCAAGAATCCGCAGGTTTTCTTCAAATCTCTCAATTTTTGTATGTTTCTCTCCTAATTTATAAATTCTTTAGCTATTACCAAGCTTTTGCTTCCAAAATCTTTGGAGTCACGGATCAATTTACAGAGACAGCGAAGTCGGAGAGTGTAGAAACAATCTCTCAAACTTCACAAGAACATCAGCAAACTCAATTACCCGAAGCAATAAGATAATGCGTCAATAGATACAATGGCAACACTGGCAGGTCAACCAACTCACCATCAACCAACTACGGTGGAGGAAGTTAGAACGCTTTGGATAGGGGATTTGCAGTACTGGGTCGATGAGTCTTACCTTAATTCTTGCTTTGCTCACACTGGGGAGGTTCGTTTGTTAGTTTTTTTTtCTTTCTTTCTTATTTATTATTATCTTTGTAACTTTGGTGTTGAATGGTGATGTTTGTAATCATAAATCCATTAGGATTTCATCAGTTTCTCTAGCTGATGACATTGTTGGTATGAAATTTAGATGTGGGTAAGTGGATTTTTGAGATTTTCTACTTTTAGTTAGGTCTTTTCGAATAATTTCTCCTGAAATTGTCTGGTGTTTGGAAGTAAATTTGGGTGTGTAAAATTAGAACGTGTTTGTATTTTGCCCTATTGGTACCGAGATCTGAAATATAGTGTGAGGGAGAGCCTCTCTTATGAACTTTCATGCCACTGAATGGGGATGAGTTTTGATGCACGAGAGCCGTGCTAGTAGAAACACCAATGTATAAAACTATAGTTTTTTATAGTTGTTTTGTTGTTATGTTCCAATACCCCATGCGAATTACGAATGTCTGATGTCTATTTGTTGTTTGTGTTCTAGAATTTGAGTAGGCACTTGTAACTCAGCTGCATTCAGACAAGAACATTCTGTAGTTTGTTGACTATGATATAAAATTTTTAGTACAGGTAATATCAATTAAAATTATTCGCAACAAGATCACTGGCCAGCCTGAAGGTTACGGGTTTGTGGAATTTGTATCTCATGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGAACTCAGATGCCTGGAACAGAGCAAACTTTCAGATTGAATTGGGCCTCCTTTGGAATTGGAGAAAGGCGCCCTGATGCTGGCCCTGAGCACTCTATTTTTGTGGGGGATTTGGCTCCTGATGTTACAGACTATCTGTTGCAAGAGACCTTTAGAGCGCAATATCCATCTGTTAGGGGTGCTAAAGTTGTGACTGATCCAAACACTGGACGTTCAAAGGGATATGGGTTTGTTAAATTTGCTGATGAAAATGAAAGGAATCGAGCTATGTCCGAAATGAATGGTGTTTACTGCTCAACTAGGCCTATGCGTATTAGTGCAGCAACTCCTAAAAAAACCATTGGTGTTCAGCAGCAATACAGTCTAGGTAAAGGTAATGAATAATGAATGTTCAGCATTGCCTTTTCTCTTCTTCATTTTGTTGTCTCACGTTTTCTTGGAGTGAGTACCATCTTTTTTACTATTCATCCATGTCTCCAACGCTTCTATCCAAATAAATAAATCAATCAATCAATTTTCCATTCCAAGTTTCCAGCGCTTCTAGCTTTTCTATTTGCATAATTATATGTTATGCTTCATACCTTTGCTAGTAGTCATAGTCATAGATATTAAACTTTTGGACTTAAAATTTGAATTTCACCTTTGTCTATGGGAGTTCTTTGTTAGATAGTGCTAAGATAATTtTTTTTTTTTTTtGCATCATCAAACCCATAGCTAGTAGTTAATAGGTTTGATCATTCTGAAATTTTAGTTGATATTAGCTAAATTAGTGTTCTTGGGTCTATGATGAAAATGTGTTAAGTTAATTGTTATTAATGTATATGTCAAAAGAGAATTTTTCTCTTATTGAATATTTTGGATAAATATGTTTAATCAATGTCAAAAATATTTTCTAAATGCCATGAGGGGAGAGGATATCTGCAAATTTCAAATAAAAGAGAATTCATTGTTAATGTATTCGTATTTTTTtCCTTTGCCCTTGAAAAAATCTTAGGATGGGATGGTAATTTCCTATTTTAAAACTTGTACTTACCAATGTGTCTCTTGTCTTAGCAATGTACCCAGTTCCAGCGTACACTACATCCGTTCCTGTGCTTCCAGCAGATTATGATGCAAATAACACAACAGTAAGTCAAGGCCAAGTGATAGTTTTACTACGTCTGGTTTCTATGCTCATCTCTTACTATATTGTGCTTTGTGCAGATATTTGTTGGTAACTTGGATCCTAATATTACAGAGGAGGAGTTGAAGCAAACTTTTTTGCAGTTTGGTGAGATTGCTTATGTGAAAATTCCTGCCGGGAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGTGTGTTTGCATGATTAATTTTATTGATGTAAGTTGAGTAAATTGCATCTCTCCTTGCTCCTGTTTCTATGCCTTGAAAGAAGCTTGTGAATAATAATAAGGTTCAGGGAGTGGGGGGAAAACCGTCGTATGGAATAGATGTTAAGTTTTTGTGTATGTACGATTCTCCAAGATATGTTATTGACTTCTTAGTTCACATGAACATTTGGAATTTTGATTTAATATGTTCTCCCTATTGTGTCCGTGCAGGGCTTCAGCTGAAGAAGCTATCCAAAAGATGCAAGGAAAGATAATTGGTCAACAAGTGGTTCGCACTTCTTGGGGTAGAAATCCAGCTGCCAAGCAGGTAATTGTGAACTTCCTATTGAATTCCAGAACAAATATTTTCCTAGATATACCAGCGTACTTTTTCCACTGTGGATGTGATATGTATTTATGAGTTTTTTTAATTCATGCTTTTGCTCGGGTTTAACTTACAAAACCGTGATTGCTCAATGAGTTTGTGCCTAAATCATTAGGTGTGTTTTCTTTTATTTAGCCTGTGAATTTGATATTTCATATTTATGGAAAAATGGCTCACATTCATCTTAGTAAATAATTTTTGCTAAAATACCATTTTGGTCTGTGTACTTTGAGGTTTTTCAATTGCAGTCCATGTATTTTCAATTGTCTAATTTTAGTTCATGTAATTTCAAGAAATCTTAAATTTAGTCTCTCAAATTCTAATGACTCAAAGTACAAGGACTATGTTTATTTTGAACAAACCTCAGAAGTATAAGGACTGGAAGTACATGGACTGTAGATATTTTGAAAGTACAAGAACTCAAATTGCTCAAATACTTTTTTTTTTTtGTGAACGTTACCCTAGTACGGAAATAGGATGTAAAGGAAAGGCCTGGAAAGTGGGGATGAGGTATACCTCAGAAAAGTACAAAGACAATCATCTTACAAACCTTTAGCAGACAGAATCATTTACCTAAACTATAATATATTGTTTTAAATATTTGCTTAGCTAAATGGGTATTTATTGGTACAGGAAAACGACTCCTTGGTAAAATTGATTATGCATGTTATCTTTCTGTTAGCAAGCTCTCACAAGTCACAACAGCCTGTTTAATGCTCATAGTGAACTAGAGCTCACTCTATTAGGTAGACTGATGAAATGGTGATGAAATGGTGATGAATTTCAGGACTTGACTACTTGGGGTCAGCAAGTTGATCCAAACCAGTGGAGCGCTTACTATGGGTATGGAGGGACTTATGATGCTTATGGATATGGAGTTGTACAAGATCCATCTTTATATGGTTATGGTGCTTATTCGGGTTATGCCTCATATCCTCAACAGGTAAGTTTTGTTTtCTTTAGAAGGCAAGAGCTCCATACTCTTCTATGGTAGATAGTGGGCAAAGTGATTGTTATAATCTATTTGTTTGCAGCCATTTTTCAATTGGAGTCTATTGGGTGAATTCTAATTGCCCTTTCAAGATGCTAAGGCTTAGAATCAGAATAAAATGAGTGGGAATCAAGAGCAATATATTTATAGAAAAAGGTTCATCTATCCAGAAAATGTATTTGCCTTTTTGATCTTGGAACTATTCATTTTAACTCTTTTCTTTTAGGTTGACGGCGTACAAGATTTGGCCACAGTAGCTGGTGCGGTCCCTTCCGTAGAACAAGGAGAGGAATGGAATGATACGTTGGATACCCCGGATGTTGATTGGTATGGCTTTCTCTTTTGTCTCTAATTAGCTACAATACAAGATTAGGAATGTACAAGTTTCTATTTTTATTTTAACTTTGCATTGACATCAAGTTGTAAATTTGGCAGTTTAAATGATGCATACCTCTCTAAACATGAAAGCGCTATTTTAGGCTGGCCGTTATGGTTGACTACTTCATCACTGGTTAGGCAAACATGAGTGTGGTTATTGTTTGTCGAAATAGGTTGGCAGCGCGTGAGGGAAACTGGAGAAAAACTACAGTATGTGCTTTATATGCTTGACCATACTCGTAGTTGATGACATTGACCCATTGCATGTATGGTATAATGTGTTTGATTTAATAATACATTTTTTACTATAGGAACGGGGTTGCCAAGGTTATGTGCTTCGATGTTCTATGTATTATGATGGTGCTCTCTACTATTTGGAAATGGAATTTTCATTATCAGGAGAACATCTGCTTTAATCTGTACTGTGTCTCATTATGCTGAAGTGGACTATTTGTATTTTGAACAGGCAGCTTAATTGTTGTCAGATTAAATTTAACAAAAAGAAAATGAAGCTGAAA

mRNA sequence

TATTAACCGTACTTTGGAGTCCCACCGTCGTCCCCAGCGCGAAACACAAAAACCCTAGCAGTGGCAATTGCCAAGAATCCGCAGAGACAGCGAAGTCGGAGAGTGTAGAAACAATCTCTCAAACTTCACAAGAACATCAGCAAACTCAATTACCCGAAGCAATAAGATAATGCGTCAATAGATACAATGGCAACACTGGCAGGTCAACCAACTCACCATCAACCAACTACGGTGGAGGAAGTTAGAACGCTTTGGATAGGGGATTTGCAGTACTGGGTCGATGAGTCTTACCTTAATTCTTGCTTTGCTCACACTGGGGAGGTAATATCAATTAAAATTATTCGCAACAAGATCACTGGCCAGCCTGAAGGTTACGGGTTTGTGGAATTTGTATCTCATGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGAACTCAGATGCCTGGAACAGAGCAAACTTTCAGATTGAATTGGGCCTCCTTTGGAATTGGAGAAAGGCGCCCTGATGCTGGCCCTGAGCACTCTATTTTTGTGGGGGATTTGGCTCCTGATGTTACAGACTATCTGTTGCAAGAGACCTTTAGAGCGCAATATCCATCTGTTAGGGGTGCTAAAGTTGTGACTGATCCAAACACTGGACGTTCAAAGGGATATGGGTTTGTTAAATTTGCTGATGAAAATGAAAGGAATCGAGCTATGTCCGAAATGAATGGTGTTTACTGCTCAACTAGGCCTATGCGTATTAGTGCAGCAACTCCTAAAAAAACCATTGGTGTTCAGCAGCAATACAGTCTAGCAATGTACCCAGTTCCAGCGTACACTACATCCGTTCCTGTGCTTCCAGCAGATTATGATGCAAATAACACAACAATATTTGTTGGTAACTTGGATCCTAATATTACAGAGGAGGAGTTGAAGCAAACTTTTTTGCAGTTTGGTGAGATTGCTTATGTGAAAATTCCTGCCGGGAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCTTCAGCTGAAGAAGCTATCCAAAAGATGCAAGGAAAGATAATTGGTCAACAAGTGGTTCGCACTTCTTGGGGTAGAAATCCAGCTGCCAAGCAGGACTTGACTACTTGGGGTCAGCAAGTTGATCCAAACCAGTGGAGCGCTTACTATGGGTATGGAGGGACTTATGATGCTTATGGATATGGAGTTGTACAAGATCCATCTTTATATGGTTATGGTGCTTATTCGGGTTATGCCTCATATCCTCAACAGGTTGACGGCGTACAAGATTTGGCCACAGTAGCTGGTGCGGTCCCTTCCGTAGAACAAGGAGAGGAATGGAATGATACGTTGGATACCCCGGATGTTGATTGTTTAAATGATGCATACCTCTCTAAACATGAAAGCGCTATTTTAGGCTGGCCGTTATGGTTGACTACTTCATCACTGGTTAGGCAAACATGAGTGTGGTTATTGTTTGTCGAAATAGGTTGGCAGCGCGTGAGGGAAACTGGAGAAAAACTACAGAACGGGGTTGCCAAGGTTATGTGCTTCGATGTTCTATGTATTATGATGGTGCTCTCTACTATTTGGAAATGGAATTTTCATTATCAGGAGAACATCTGCTTTAATCTGTACTGTGTCTCATTATGCTGAAGTGGACTATTTGTATTTTGAACAGGCAGCTTAATTGTTGTCAGATTAAATTTAACAAAAAGAAAATGAAGCTGAAA

Coding sequence (CDS)

ATGGCAACACTGGCAGGTCAACCAACTCACCATCAACCAACTACGGTGGAGGAAGTTAGAACGCTTTGGATAGGGGATTTGCAGTACTGGGTCGATGAGTCTTACCTTAATTCTTGCTTTGCTCACACTGGGGAGGTAATATCAATTAAAATTATTCGCAACAAGATCACTGGCCAGCCTGAAGGTTACGGGTTTGTGGAATTTGTATCTCATGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGAACTCAGATGCCTGGAACAGAGCAAACTTTCAGATTGAATTGGGCCTCCTTTGGAATTGGAGAAAGGCGCCCTGATGCTGGCCCTGAGCACTCTATTTTTGTGGGGGATTTGGCTCCTGATGTTACAGACTATCTGTTGCAAGAGACCTTTAGAGCGCAATATCCATCTGTTAGGGGTGCTAAAGTTGTGACTGATCCAAACACTGGACGTTCAAAGGGATATGGGTTTGTTAAATTTGCTGATGAAAATGAAAGGAATCGAGCTATGTCCGAAATGAATGGTGTTTACTGCTCAACTAGGCCTATGCGTATTAGTGCAGCAACTCCTAAAAAAACCATTGGTGTTCAGCAGCAATACAGTCTAGCAATGTACCCAGTTCCAGCGTACACTACATCCGTTCCTGTGCTTCCAGCAGATTATGATGCAAATAACACAACAATATTTGTTGGTAACTTGGATCCTAATATTACAGAGGAGGAGTTGAAGCAAACTTTTTTGCAGTTTGGTGAGATTGCTTATGTGAAAATTCCTGCCGGGAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCTTCAGCTGAAGAAGCTATCCAAAAGATGCAAGGAAAGATAATTGGTCAACAAGTGGTTCGCACTTCTTGGGGTAGAAATCCAGCTGCCAAGCAGGACTTGACTACTTGGGGTCAGCAAGTTGATCCAAACCAGTGGAGCGCTTACTATGGGTATGGAGGGACTTATGATGCTTATGGATATGGAGTTGTACAAGATCCATCTTTATATGGTTATGGTGCTTATTCGGGTTATGCCTCATATCCTCAACAGGTTGACGGCGTACAAGATTTGGCCACAGTAGCTGGTGCGGTCCCTTCCGTAGAACAAGGAGAGGAATGGAATGATACGTTGGATACCCCGGATGTTGATTGTTTAAATGATGCATACCTCTCTAAACATGAAAGCGCTATTTTAGGCTGGCCGTTATGGTTGACTACTTCATCACTGGTTAGGCAAACATGA

Protein sequence

MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVRQT*

Homology

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BLAST of Cucsa.301810.4 vs. Swiss-Prot
Match: R47BP_ARATH (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 4.1e-162
Identity = 290/420 (69.05%), Postives = 329/420 (78.33%), Query Frame = 1


Query: 7   QPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFV 66
           Q ++H P T+EEVRTLWIGDLQYWVDE+YL SCF+ TGE++S+K+IRNKITGQPEGYGF+
Sbjct: 11  QGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFI 70

Query: 67  EFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 126
           EF+SHAAAER LQTYNGTQMPGTE TFRLNWASFG G++  DAGP+HSIFVGDLAPDVTD
Sbjct: 71  EFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTD 130

Query: 127 YLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMR 186
           YLLQETFR  Y SVRGAKVVTDP+TGRSKGYGFVKFA+E+ERNRAM+EMNG+YCSTRPMR
Sbjct: 131 YLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMR 190

Query: 187 ISAATPKKTIGVQQQY-SLAMYPVP-----AYTTSVPVLPADYDANNTTIFVGNLDPNIT 246
           ISAATPKK +GVQQQY + A+YPV      A      V P + D   TTI V NLD N+T
Sbjct: 191 ISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVT 250

Query: 247 EEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRN 306
           EEELK+ F Q GE+ YVKIPA KG G+VQF TR SAEEA+Q+MQG++IGQQ VR SW +N
Sbjct: 251 EEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKN 310

Query: 307 PAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVDG 366
           P   QD   W  Q DPNQW+ YYGYG  YDAY YG  QDPS+Y YG Y GY  YPQQ +G
Sbjct: 311 PG--QD--GWVTQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGY-GYPQYPQQGEG 370

Query: 367 VQDLA-TVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVRQ 420
            QD++ + AG V   EQ  E  D L TPDVD LN AYLS H SAILG P+W  TSSL  Q
Sbjct: 371 TQDISNSAAGGVAGAEQ--ELYDPLATPDVDKLNAAYLSVHASAILGRPMWQRTSSLTSQ 422

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BLAST of Cucsa.301810.4 vs. Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 1.2e-116
Identity = 222/359 (61.84%), Postives = 261/359 (72.70%), Query Frame = 1


Query: 1   MATLAGQPTHHQPT-TVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQ 60
           MAT    P+   PT    EVR+LWIGDLQYW+DE+YL++CF HTGE++S K+IRNK TGQ
Sbjct: 67  MATTNPNPS---PTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQ 126

Query: 61  PEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGD 120
            EGYGF+EF SHAAAE ILQTYNGT MP  EQ FR+NWAS G GERR D+  EH+IFVGD
Sbjct: 127 SEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA-EHTIFVGD 186

Query: 121 LAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVY 180
           LA DVTDY+LQETF++ Y SVRGAKVVTD  TGRSKGYGFVKFADE+E+ RAM+EMNGV 
Sbjct: 187 LAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVL 246

Query: 181 CSTRPMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNI 240
           CSTRPMRI  A  KK +G  Q+   A Y  P  T        + D NNTTIFVG LDP +
Sbjct: 247 CSTRPMRIGPAANKKPVGTPQK---ATYQNPQAT------QGESDPNNTTIFVGGLDPTV 306

Query: 241 TEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGR 300
            EE L+Q F  +GE+ +VKI AGK CGFVQFGTRASAE+A+  + G  +G Q +R SWGR
Sbjct: 307 AEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGR 366

Query: 301 NPAAKQ-DLTTWGQQVDPNQWSAYYGYGGTYDAYGYG-VVQDPSLYGYGAYSGYASYPQ 357
           +P++KQ D T WG         AYYGYG  Y+AYGY    QDP++Y YG Y GYA+Y Q
Sbjct: 367 SPSSKQTDQTQWG-----GSGGAYYGYGQGYEAYGYAPPAQDPNMY-YGNYPGYANYQQ 406

[Close]

BLAST of Cucsa.301810.4 vs. Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 5.6e-111
Identity = 206/351 (58.69%), Postives = 255/351 (72.65%), Query Frame = 1


Query: 8   PTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVE 67
           PT  Q ++ E+ +T+WIGDLQ W+DESYL+SCF+  GEVIS+KIIRNK TGQ E YGFVE
Sbjct: 73  PTQIQSSS-EDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVE 132

Query: 68  FVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDY 127
           F +HAAAE++LQ+YNGT MP TEQ FRLNWA F  GE+R + G + SIFVGDLA DVTD 
Sbjct: 133 FNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDT 192

Query: 128 LLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRI 187
           +L++TF ++YPS++GAKVV D NTG SKGYGFV+F DE+ER+RAM+EMNGVYCS+R MRI
Sbjct: 193 MLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRI 252

Query: 188 SAATPKKTIGVQQQYSLAMYPVPAYTTSVPVL---PADYDANNTTIFVGNLDPNITEEEL 247
             ATPKK    +Q  S A+     Y ++        +D D++NTTIFVG LD  +T+EEL
Sbjct: 253 GVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEEL 312

Query: 248 KQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAK 307
           +Q+F QFGE+  VKIPAGKGCGFVQF  R+SA+EAIQK+ G IIG+Q VR SWGR+PA K
Sbjct: 313 RQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANK 372

Query: 308 QDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVV--QDPSLYGYGAYSGYAS 354
           Q  T  G     +QW+  Y     Y  YGYG    QD  +Y  GA  G +S
Sbjct: 373 QMRTDSG-----SQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASS 417

[Close]

BLAST of Cucsa.301810.4 vs. Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.9e-106
Identity = 197/347 (56.77%), Postives = 249/347 (71.76%), Query Frame = 1


Query: 5   AGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYG 64
           A  P   QPTT +E+RTLWIGDLQYW+DE++L  CFAHTGE++S K+IRNK TGQ EGYG
Sbjct: 47  AAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106

Query: 65  FVEFVSHAAAERILQTYNGTQMPG-TEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPD 124
           F+EF SHAAAER+LQT+N   +P   +Q FRLNWAS   G++R D+ P+++IFVGDLA D
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAAD 166

Query: 125 VTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTR 184
           VTDY+L ETFRA YPSV+GAKVV D  TGR+KGYGFV+F+DE+E+ RAM+EMNGV CSTR
Sbjct: 167 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTR 226

Query: 185 PMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEE 244
           PMRI  A  KK +  Q+          +Y +S   +  D D NNTT+FVG LD ++T++ 
Sbjct: 227 PMRIGPAASKKGVTGQRD---------SYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDH 286

Query: 245 LKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAA 304
           LK  F Q+GEI +VKIPAGK CGFVQF  ++ AEEA++ + G  +G   VR SWGR+P+ 
Sbjct: 287 LKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSN 346

Query: 305 KQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSG 351
           K       Q  DP+Q+  Y GYG   + YGY + QDP+ Y YG YSG
Sbjct: 347 K-------QSGDPSQF-YYGGYGQGQEQYGYTMPQDPNAY-YGGYSG 374

[Close]

BLAST of Cucsa.301810.4 vs. Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 2.3e-104
Identity = 195/351 (55.56%), Postives = 238/351 (67.81%), Query Frame = 1


Query: 13  PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
           P +  +V++LWIGDLQ W+DE+Y+ S FA +GE  S K+IRNK+TGQ EGYGF+EFVSH+
Sbjct: 53  PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHS 112

Query: 73  AAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDYLLQE 132
            AER+LQTYNG  MP TEQTFRLNWA  G GE+R    GP+H+IFVGDLAP+VTDY+L +
Sbjct: 113 VAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSD 172

Query: 133 TFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAAT 192
           TF+  Y SV+GAKVV D  TGRSKGYGFV+FADENE+ RAM+EMNG YCSTRPMRI  A 
Sbjct: 173 TFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA 232

Query: 193 PKKTIGVQQQYSLAMYPVPA-YTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQ 252
            K  + +Q          PA Y  +      D D NNTTIFVG LD N+T++ELK  F Q
Sbjct: 233 NKNALPMQ----------PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQ 292

Query: 253 FGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLTTW 312
           FGE+ +VKIP GK CGFVQ+  +ASAE A+  + G  +G Q +R SWGR+P  + D   W
Sbjct: 293 FGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQW 352

Query: 313 GQQVDPNQWSAYYGY-GGTYDAYGYGV---VQDPSLYGYGAYSGYASYPQQ 358
                      YYGY       YGY      QDP+ Y YG Y+GY +Y QQ
Sbjct: 353 -------NGGGYYGYPPQPQGGYGYAAQPPTQDPNAY-YGGYTGYGNYQQQ 385

[Close]

BLAST of Cucsa.301810.4 vs. TrEMBL
Match: A0A0A0KKV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162020 PE=4 SV=1)

HSP 1 Score: 700.7 bits (1807), Expect = 1.1e-198
Identity = 353/395 (89.37%), Postives = 358/395 (90.63%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSL--AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSL  AMYPVPAYTTSVPVLPADYDANNTT+   N    
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTLVNNNKVQG 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGF-VQFGTRASAEEAIQKMQGKIIGQQVVRTSW 300
           +            G+ +Y         G  V+F   ASAEEAIQKMQGKIIGQQVVRTSW
Sbjct: 241 VG-----------GKPSY---------GIDVKFLCMASAEEAIQKMQGKIIGQQVVRTSW 300

Query: 301 GRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           GRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ
Sbjct: 301 GRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360

Query: 361 VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCL 393
           VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVD L
Sbjct: 361 VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDWL 375

[Close]

BLAST of Cucsa.301810.4 vs. TrEMBL
Match: M5WM59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005940mg PE=4 SV=1)

HSP 1 Score: 693.7 bits (1789), Expect = 1.4e-196
Identity = 339/416 (81.49%), Postives = 366/416 (87.98%), Query Frame = 1


Query: 7   QPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFV 66
           Q  HHQPT+VEEVRTLWIGDLQYWVDE+YL +CFAHTGEVISIKIIRNKITGQPEGYGFV
Sbjct: 20  QHHHHQPTSVEEVRTLWIGDLQYWVDENYLTTCFAHTGEVISIKIIRNKITGQPEGYGFV 79

Query: 67  EFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 126
           EFVSHAAAER+L  YNGT MPGTEQ FRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD
Sbjct: 80  EFVSHAAAERVLHAYNGTLMPGTEQNFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 139

Query: 127 YLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMR 186
           ++LQETFR QY SVRGAKVVTDPNTGRSKGYGFVKFADE ERNRAM+EMNGVYCSTR MR
Sbjct: 140 FMLQETFRTQYSSVRGAKVVTDPNTGRSKGYGFVKFADETERNRAMTEMNGVYCSTRQMR 199

Query: 187 ISAATPKKTIGVQQQY-SLAMYPVPAYTT-SVPVLPADYDANNTTIFVGNLDPNITEEEL 246
           ISAATPKKT G QQQY +  +YP PAYTT +VPVLPADYDANNTTIFVGNLDPN+TEEEL
Sbjct: 200 ISAATPKKTTGFQQQYGATKVYPNPAYTTPAVPVLPADYDANNTTIFVGNLDPNVTEEEL 259

Query: 247 KQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAK 306
           KQ+F+QFGEI YVKIP GKGCGFVQFGTRASAEEAIQ+MQG +IGQQVVR SWGR+P AK
Sbjct: 260 KQSFMQFGEIPYVKIPVGKGCGFVQFGTRASAEEAIQRMQGMMIGQQVVRISWGRSPTAK 319

Query: 307 QDLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVDGVQD 366
           QD+  ++ QQVDP+QW+AYYGYG  YDAY YG  QDPSLY YGAY+GY  YPQQV+GVQD
Sbjct: 320 QDVPGSFAQQVDPSQWAAYYGYGQGYDAYAYGATQDPSLYAYGAYAGYGQYPQQVEGVQD 379

Query: 367 LATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVRQ 420
           LA + G VPSVEQ EE +D L TPDVD LN AYLS H  AILG P+WL TSS  +Q
Sbjct: 380 LAAMGGTVPSVEQREELDDPLATPDVDKLNAAYLSVHGRAILGRPMWLRTSSFTQQ 435

[Close]

BLAST of Cucsa.301810.4 vs. TrEMBL
Match: A0A061GTF5_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1)

HSP 1 Score: 676.4 bits (1744), Expect = 2.2e-191
Identity = 328/418 (78.47%), Postives = 359/418 (85.89%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MAT+A    HH PT++EEVRTLWIGDLQ+WVDESYLNSCFAHTGE++SIKIIRNKITGQP
Sbjct: 1   MATIAASQHHHHPTSLEEVRTLWIGDLQFWVDESYLNSCFAHTGELVSIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGT MPGT+Q FRLNWASFGIGERR D GPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTPMPGTDQMFRLNWASFGIGERRTDPGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRA YPSVRGAKVVTDPNTGRSKGYGFVKF+DE ERNRAM+EMNGVYC
Sbjct: 121 APDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDEIERNRAMTEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSL--AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STR MRISAATPKK  G QQQY++  A+YP PAYTT V VLP D D+ NTTIF+GNLDPN
Sbjct: 181 STRAMRISAATPKKPTGFQQQYAVAKAVYPAPAYTTPVQVLPPDNDSTNTTIFIGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           +TEEELKQ F   G+I YVKIPA KGCGFVQF TR SAEEAIQ+MQG++IGQQ+VR SWG
Sbjct: 241 VTEEELKQLFSPLGDIVYVKIPAAKGCGFVQFATRTSAEEAIQRMQGQMIGQQLVRISWG 300

Query: 301 RNPAAKQDLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           R+P AKQDL  +WG Q DP+QWSAYYGYG +YDAY YG  QDPSLY YGAY+GYA YPQQ
Sbjct: 301 RSPTAKQDLPGSWGTQADPSQWSAYYGYGQSYDAYAYGATQDPSLYAYGAYAGYAQYPQQ 360

Query: 361 VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSS 416
           V+G QD+A +AGA P++EQ +E  D L TPDVD LN  YLS H SAILG PLWL T S
Sbjct: 361 VEGSQDMAAMAGAFPALEQRDESYDPLATPDVDKLNTTYLSVHGSAILGRPLWLRTFS 418

[Close]

BLAST of Cucsa.301810.4 vs. TrEMBL
Match: A0A061GZ97_THECC (RNA-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1)

HSP 1 Score: 673.3 bits (1736), Expect = 1.9e-190
Identity = 327/418 (78.23%), Postives = 357/418 (85.41%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MAT+A    HH PT++EEVRTLWIGDLQ+WVDESYLNSCFAHTGE++SIKIIRNKITGQP
Sbjct: 1   MATIAASQHHHHPTSLEEVRTLWIGDLQFWVDESYLNSCFAHTGELVSIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGT MPGT+Q FRLNWASFGIGERR D GPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTPMPGTDQMFRLNWASFGIGERRTDPGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRA YPSVRGAKVVTDPNTGRSKGYGFVKF+DE ERNRAM+EMNGVYC
Sbjct: 121 APDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDEIERNRAMTEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSL--AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STR MRISAATPKK  G QQQY++  A+YP PAYTT V VLP D D+ NTTIF+GNLDPN
Sbjct: 181 STRAMRISAATPKKPTGFQQQYAVAKAVYPAPAYTTPVQVLPPDNDSTNTTIFIGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           +TEEELKQ F   G+I YVKIPA KGCGFVQF TR SAEEAIQ+MQG++IGQQ+VR SWG
Sbjct: 241 VTEEELKQLFSPLGDIVYVKIPAAKGCGFVQFATRTSAEEAIQRMQGQMIGQQLVRISWG 300

Query: 301 RNPAAKQDLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           R+P AKQDL  +WG Q DP+QWSAYYGYG +YDAY YG  QDPSLY YGAY+GYA YPQQ
Sbjct: 301 RSPTAKQDLPGSWGTQADPSQWSAYYGYGQSYDAYAYGATQDPSLYAYGAYAGYAQYPQQ 360

Query: 361 VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSS 416
             G QD+A +AGA P++EQ +E  D L TPDVD LN  YLS H SAILG PLWL T S
Sbjct: 361 ARGSQDMAAMAGAFPALEQRDESYDPLATPDVDKLNTTYLSVHGSAILGRPLWLRTFS 418

[Close]

BLAST of Cucsa.301810.4 vs. TrEMBL
Match: D7SL59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02040 PE=4 SV=1)

HSP 1 Score: 667.5 bits (1721), Expect = 1.0e-188
Identity = 334/420 (79.52%), Postives = 361/420 (85.95%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           ++++A    + QPT+VEEVRTLWIGDLQYWVDE+YL+SCFAHTGEVISIKIIRNKITGQP
Sbjct: 22  VSSMASAQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQP 81

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQ YNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 82  EGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 141

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGR+KGYGFVKF+DE ERNRAM+EMNGVYC
Sbjct: 142 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYC 201

Query: 181 STRPMRISAATPKKTIGVQQQYSL---AMYPVPAYTT-SVPVLPADYDANNTTIFVGNLD 240
           STRPMRISAATPKKT G QQQY+    A+YP PAYTT  +  LPAD D NNTTIFVGNLD
Sbjct: 202 STRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLD 261

Query: 241 PNITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTS 300
           PN+TEEELKQ F QFGE+ YVKIPAG+GCGFVQFGTR SAEEAIQ+MQG +IGQ VVR S
Sbjct: 262 PNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRIS 321

Query: 301 WGRNPAAKQDLT-TWGQQVDPNQW-SAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASY 360
           WGR+P AKQDL  +WGQQ DP+QW SAYYGYG  YDAY YG  QDPSLY YGAY+GY  Y
Sbjct: 322 WGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDAYPYGATQDPSLYAYGAYAGYLQY 381

Query: 361 PQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTS 415
           PQQ      LA +AGAVP+VEQ +E  D L TPDVD LN AYL+ H SAILG  LWL TS
Sbjct: 382 PQQAR--YYLAAMAGAVPAVEQRDELYDPLATPDVDKLNAAYLAVHGSAILGRSLWLKTS 439

[Close]

BLAST of Cucsa.301810.4 vs. TAIR10
Match: AT5G19350.1 (AT5G19350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 572.4 bits (1474), Expect = 2.3e-163
Identity = 290/420 (69.05%), Postives = 329/420 (78.33%), Query Frame = 1


Query: 7   QPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFV 66
           Q ++H P T+EEVRTLWIGDLQYWVDE+YL SCF+ TGE++S+K+IRNKITGQPEGYGF+
Sbjct: 11  QGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFI 70

Query: 67  EFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 126
           EF+SHAAAER LQTYNGTQMPGTE TFRLNWASFG G++  DAGP+HSIFVGDLAPDVTD
Sbjct: 71  EFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTD 130

Query: 127 YLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMR 186
           YLLQETFR  Y SVRGAKVVTDP+TGRSKGYGFVKFA+E+ERNRAM+EMNG+YCSTRPMR
Sbjct: 131 YLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMR 190

Query: 187 ISAATPKKTIGVQQQY-SLAMYPVP-----AYTTSVPVLPADYDANNTTIFVGNLDPNIT 246
           ISAATPKK +GVQQQY + A+YPV      A      V P + D   TTI V NLD N+T
Sbjct: 191 ISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVT 250

Query: 247 EEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRN 306
           EEELK+ F Q GE+ YVKIPA KG G+VQF TR SAEEA+Q+MQG++IGQQ VR SW +N
Sbjct: 251 EEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKN 310

Query: 307 PAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVDG 366
           P   QD   W  Q DPNQW+ YYGYG  YDAY YG  QDPS+Y YG Y GY  YPQQ +G
Sbjct: 311 PG--QD--GWVTQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGY-GYPQYPQQGEG 370

Query: 367 VQDLA-TVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVRQ 420
            QD++ + AG V   EQ  E  D L TPDVD LN AYLS H SAILG P+W  TSSL  Q
Sbjct: 371 TQDISNSAAGGVAGAEQ--ELYDPLATPDVDKLNAAYLSVHASAILGRPMWQRTSSLTSQ 422

[Close]

BLAST of Cucsa.301810.4 vs. TAIR10
Match: AT1G11650.2 (AT1G11650.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 387.5 bits (994), Expect = 1.1e-107
Identity = 197/347 (56.77%), Postives = 249/347 (71.76%), Query Frame = 1


Query: 5   AGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYG 64
           A  P   QPTT +E+RTLWIGDLQYW+DE++L  CFAHTGE++S K+IRNK TGQ EGYG
Sbjct: 47  AAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106

Query: 65  FVEFVSHAAAERILQTYNGTQMPG-TEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPD 124
           F+EF SHAAAER+LQT+N   +P   +Q FRLNWAS   G++R D+ P+++IFVGDLA D
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAAD 166

Query: 125 VTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTR 184
           VTDY+L ETFRA YPSV+GAKVV D  TGR+KGYGFV+F+DE+E+ RAM+EMNGV CSTR
Sbjct: 167 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTR 226

Query: 185 PMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEE 244
           PMRI  A  KK +  Q+          +Y +S   +  D D NNTT+FVG LD ++T++ 
Sbjct: 227 PMRIGPAASKKGVTGQRD---------SYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDH 286

Query: 245 LKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAA 304
           LK  F Q+GEI +VKIPAGK CGFVQF  ++ AEEA++ + G  +G   VR SWGR+P+ 
Sbjct: 287 LKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSN 346

Query: 305 KQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSG 351
           K       Q  DP+Q+  Y GYG   + YGY + QDP+ Y YG YSG
Sbjct: 347 K-------QSGDPSQF-YYGGYGQGQEQYGYTMPQDPNAY-YGGYSG 374

[Close]

BLAST of Cucsa.301810.4 vs. TAIR10
Match: AT5G54900.1 (AT5G54900.1 RNA-binding protein 45A)

HSP 1 Score: 380.6 bits (976), Expect = 1.3e-105
Identity = 195/351 (55.56%), Postives = 238/351 (67.81%), Query Frame = 1


Query: 13  PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
           P +  +V++LWIGDLQ W+DE+Y+ S FA +GE  S K+IRNK+TGQ EGYGF+EFVSH+
Sbjct: 53  PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHS 112

Query: 73  AAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDYLLQE 132
            AER+LQTYNG  MP TEQTFRLNWA  G GE+R    GP+H+IFVGDLAP+VTDY+L +
Sbjct: 113 VAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSD 172

Query: 133 TFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAAT 192
           TF+  Y SV+GAKVV D  TGRSKGYGFV+FADENE+ RAM+EMNG YCSTRPMRI  A 
Sbjct: 173 TFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA 232

Query: 193 PKKTIGVQQQYSLAMYPVPA-YTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQ 252
            K  + +Q          PA Y  +      D D NNTTIFVG LD N+T++ELK  F Q
Sbjct: 233 NKNALPMQ----------PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQ 292

Query: 253 FGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLTTW 312
           FGE+ +VKIP GK CGFVQ+  +ASAE A+  + G  +G Q +R SWGR+P  + D   W
Sbjct: 293 FGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQW 352

Query: 313 GQQVDPNQWSAYYGY-GGTYDAYGYGV---VQDPSLYGYGAYSGYASYPQQ 358
                      YYGY       YGY      QDP+ Y YG Y+GY +Y QQ
Sbjct: 353 -------NGGGYYGYPPQPQGGYGYAAQPPTQDPNAY-YGGYTGYGNYQQQ 385

[Close]

BLAST of Cucsa.301810.4 vs. TAIR10
Match: AT1G47500.1 (AT1G47500.1 RNA-binding protein 47C')

HSP 1 Score: 377.5 bits (968), Expect = 1.1e-104
Identity = 204/354 (57.63%), Postives = 246/354 (69.49%), Query Frame = 1


Query: 11  HQPTTVEEVRTLWIGDLQYWVDESYLNSCF--AHTGEVISIKIIRNKITGQPEGYGFVEF 70
           HQ     E +T+W+GDLQ W+DE+YLNS F  A   E++S+K+IRNK  G  EGYGFVEF
Sbjct: 94  HQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEF 153

Query: 71  VSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDY 130
            SH  A+++LQ +NG  MP T+Q FRLNWASF  GE+R  + GP+ SIFVGDLAPDV+D 
Sbjct: 154 ESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDA 213

Query: 131 LLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRI 190
           LL ETF  +YPSV+ AKVV D NTGRSKGYGFV+F DENER +AM+EMNGV CS+R MRI
Sbjct: 214 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273

Query: 191 SAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQT 250
             ATP+KT G QQQ      P  A+T S      + D  NTTIFVG LD ++T+E+LKQ 
Sbjct: 274 GPATPRKTNGYQQQG--GYMPSGAFTRS------EGDTINTTIFVGGLDSSVTDEDLKQP 333

Query: 251 FLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDL 310
           F +FGEI  VKIP GKGCGFVQF  R +AEEA++K+ G +IG+Q VR SWGRNPA KQ  
Sbjct: 334 FSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 393

Query: 311 TTWGQQ-VDPNQWSAYYGYGGTYDAYGYGVVQ-DPSLYGYGA-YSGYASYPQQV 359
             +G Q VDP     YYG G  Y+ YGY V Q DP +Y     Y  Y  + QQV
Sbjct: 394 DKYGNQWVDP-----YYG-GQFYNGYGYMVPQPDPRMYPAAPYYPMYGGHQQQV 433

[Close]

BLAST of Cucsa.301810.4 vs. TAIR10
Match: AT1G47490.1 (AT1G47490.1 RNA-binding protein 47C)

HSP 1 Score: 372.9 bits (956), Expect = 2.7e-103
Identity = 199/354 (56.21%), Postives = 245/354 (69.21%), Query Frame = 1


Query: 11  HQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGE--VISIKIIRNKITGQPEGYGFVEF 70
           HQ     E +T+W+GDL +W+DE+YLNS FA   E  ++S+K+IRNK  G  EGYGFVEF
Sbjct: 92  HQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEF 151

Query: 71  VSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDY 130
            SH  A+++L+ +NGT MP T+Q FRLNWASF  GE+R  + GP+ SIFVGDL+PDV+D 
Sbjct: 152 ESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDN 211

Query: 131 LLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRI 190
           LL ETF  +YPSV+ AKVV D NTGRSKGYGFV+F DENER +AM+EMNGV CS+R MRI
Sbjct: 212 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271

Query: 191 SAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQT 250
             ATP+KT G QQQ          Y  +  +   + D  NTTIFVG LD ++T+E+LKQ 
Sbjct: 272 GPATPRKTNGYQQQ--------GGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQP 331

Query: 251 FLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDL 310
           F +FGEI  VKIP GKGCGFVQF  R +AEEA++K+ G +IG+Q VR SWGRNPA KQ  
Sbjct: 332 FNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 391

Query: 311 TTWGQQ-VDPNQWSAYYGYGGTYDAYGYGVVQ-DPSLYGYGA-YSGYASYPQQV 359
             +G Q VDP     YYG G  Y+ YGY V Q DP +Y     Y  Y  + QQV
Sbjct: 392 DKYGNQWVDP-----YYG-GQFYNGYGYMVPQPDPRMYPAAPYYPMYGGHQQQV 431

[Close]

BLAST of Cucsa.301810.4 vs. NCBI nr
Match: gi|449469386|ref|XP_004152401.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis sativus])

HSP 1 Score: 864.0 bits (2231), Expect = 1.1e-247
Identity = 420/422 (99.53%), Postives = 420/422 (99.53%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSL--AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSL  AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV 360
           RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV
Sbjct: 301 RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV 360

Query: 361 DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR 420
           DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR
Sbjct: 361 DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR 420

[Close]

BLAST of Cucsa.301810.4 vs. NCBI nr
Match: gi|778700075|ref|XP_011654805.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Cucumis sativus])

HSP 1 Score: 862.8 bits (2228), Expect = 2.4e-247
Identity = 420/425 (98.82%), Postives = 420/425 (98.82%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNIT 240
           STRPMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNIT
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNIT 240

Query: 241 EEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRN 300
           EEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRN
Sbjct: 241 EEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRN 300

Query: 301 PAAKQ-----DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYP 360
           PAAKQ     DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYP
Sbjct: 301 PAAKQENDSLDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYP 360

Query: 361 QQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSS 420
           QQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSS
Sbjct: 361 QQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSS 420

[Close]

BLAST of Cucsa.301810.4 vs. NCBI nr
Match: gi|778700063|ref|XP_011654802.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis sativus])

HSP 1 Score: 857.8 bits (2215), Expect = 7.8e-246
Identity = 420/427 (98.36%), Postives = 420/427 (98.36%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSL--AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSL  AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQ-----DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360
           RNPAAKQ     DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS
Sbjct: 301 RNPAAKQENDSLDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360

Query: 361 YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT 420
           YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT
Sbjct: 361 YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT 420

[Close]

BLAST of Cucsa.301810.4 vs. NCBI nr
Match: gi|659073474|ref|XP_008437079.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis melo])

HSP 1 Score: 855.5 bits (2209), Expect = 3.9e-245
Identity = 417/422 (98.82%), Postives = 417/422 (98.82%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSL--AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSL  AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV 360
           RNPAAKQDL TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLY YGAYSGYASYPQQV
Sbjct: 301 RNPAAKQDLATWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYAYGAYSGYASYPQQV 360

Query: 361 DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR 420
           DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVD LNDAYLSKHESAILGWPLWLTTSSLVR
Sbjct: 361 DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDYLNDAYLSKHESAILGWPLWLTTSSLVR 420

[Close]

BLAST of Cucsa.301810.4 vs. NCBI nr
Match: gi|659073472|ref|XP_008437078.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Cucumis melo])

HSP 1 Score: 854.4 bits (2206), Expect = 8.6e-245
Identity = 417/425 (98.12%), Postives = 417/425 (98.12%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNIT 240
           STRPMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNIT
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNIT 240

Query: 241 EEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRN 300
           EEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRN
Sbjct: 241 EEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRN 300

Query: 301 PAAKQ-----DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYP 360
           PAAKQ     DL TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLY YGAYSGYASYP
Sbjct: 301 PAAKQEIDSLDLATWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYAYGAYSGYASYP 360

Query: 361 QQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSS 420
           QQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVD LNDAYLSKHESAILGWPLWLTTSS
Sbjct: 361 QQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDYLNDAYLSKHESAILGWPLWLTTSS 420

The following BLAST results are available for this feature:

BLAST of Cucsa.301810.4 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R47BP_ARATH	4.1e-162	69.05	Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV...	[more]
RBP45_NICPL	1.2e-116	61.84	Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 S...	[more]
RBP47_NICPL	5.6e-111	58.69	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 S...	[more]
RB45B_ARATH	1.9e-106	56.77	Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1	[more]
RB45A_ARATH	2.3e-104	55.56	Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1	[more]

BLAST of Cucsa.301810.4 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKV7_CUCSA	1.1e-198	89.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162020 PE=4 SV=1	[more]
M5WM59_PRUPE	1.4e-196	81.49	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005940mg PE=4 SV=1	[more]
A0A061GTF5_THECC	2.2e-191	78.47	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1	[more]
A0A061GZ97_THECC	1.9e-190	78.23	RNA-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1	[more]
D7SL59_VITVI	1.0e-188	79.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02040 PE=4 SV=...	[more]

BLAST of Cucsa.301810.4 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19350.1	2.3e-163	69.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G11650.2	1.1e-107	56.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54900.1	1.3e-105	55.56	RNA-binding protein 45A	[more]
AT1G47500.1	1.1e-104	57.63	RNA-binding protein 47C'	[more]
AT1G47490.1	2.7e-103	56.21	RNA-binding protein 47C	[more]

BLAST of Cucsa.301810.4 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469386\|ref\|XP_004152401.1\|	1.1e-247	99.53	PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis sativus]	[more]
gi\|778700075\|ref\|XP_011654805.1\|	2.4e-247	98.82	PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Cucumis sativus]	[more]
gi\|778700063\|ref\|XP_011654802.1\|	7.8e-246	98.36	PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis sativus]	[more]
gi\|659073474\|ref\|XP_008437079.1\|	3.9e-245	98.82	PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis melo]	[more]
gi\|659073472\|ref\|XP_008437078.1\|	8.6e-245	98.12	PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.301810	Cucsa.301810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.4	Cucsa.301810.4-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.4.five_prime_UTR.1	Cucsa.301810.4.five_prime_UTR.1	five_prime_UTR
Cucsa.301810.4.five_prime_UTR.2	Cucsa.301810.4.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.4.CDS.1	Cucsa.301810.4.CDS.1	CDS
Cucsa.301810.4.CDS.2	Cucsa.301810.4.CDS.2	CDS
Cucsa.301810.4.CDS.3	Cucsa.301810.4.CDS.3	CDS
Cucsa.301810.4.CDS.4	Cucsa.301810.4.CDS.4	CDS
Cucsa.301810.4.CDS.5	Cucsa.301810.4.CDS.5	CDS
Cucsa.301810.4.CDS.6	Cucsa.301810.4.CDS.6	CDS
Cucsa.301810.4.CDS.7	Cucsa.301810.4.CDS.7	CDS
Cucsa.301810.4.CDS.8	Cucsa.301810.4.CDS.8	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.4.three_prime_UTR.1	Cucsa.301810.4.three_prime_UTR.1	three_prime_UTR
Cucsa.301810.4.three_prime_UTR.2	Cucsa.301810.4.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 115..180 score: 1.5E-16coord: 22..90 score: 1.5E-14coord: 230..293 score: 4.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 229..296 score: 1.3E-22coord: 21..96 score: 2.8E-14coord: 114..188 score: 3.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 20..100 score: 15.409coord: 113..192 score: 17.455coord: 228..300 score: 17
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 220..314 score: 1.7E-23coord: 7..98 score: 6.6E-21coord: 106..194 score: 1.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 112..302 score: 1.22E-44coord: 8..88 score: 8.96
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 90..359 score: 6.1E
None	No IPR available	PANTHER	PTHR24012:SF333	POLYADENYLATE-BINDING PROTEIN RBP45B-RELATED	coord: 90..359 score: 6.1E