Cucsa.301810.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.301810.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA-binding family protein
Location	scaffold02951 : 73300 .. 78038 (+)
Sequence length	1835

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTAACCGTACTTTGGAGTCCCACCGTCGTCCCCAGCGCGAAACACAAAAACCCTAGCAGTGGCAATTGCCAAGAATCCGCAGGTTTTCTTCAAATCTCTCAATTTTTGTATGTTTCTCTCCTAATTTATAAATTCTTTAGCTATTACCAAGCTTTTGCTTCCAAAATCTTTGGAGTCACGGATCAATTTACAGAGACAGCGAAGTCGGAGAGTGTAGAAACAATCTCTCAAACTTCACAAGAACATCAGCAAACTCAATTACCCGAAGCAATAAGATAATGCGTCAATAGATACAATGGCAACACTGGCAGGTCAACCAACTCACCATCAACCAACTACGGTGGAGGAAGTTAGAACGCTTTGGATAGGGGATTTGCAGTACTGGGTCGATGAGTCTTACCTTAATTCTTGCTTTGCTCACACTGGGGAGGTTCGTTTGTTAGTTTTTTTTtCTTTCTTTCTTATTTATTATTATCTTTGTAACTTTGGTGTTGAATGGTGATGTTTGTAATCATAAATCCATTAGGATTTCATCAGTTTCTCTAGCTGATGACATTGTTGGTATGAAATTTAGATGTGGGTAAGTGGATTTTTGAGATTTTCTACTTTTAGTTAGGTCTTTTCGAATAATTTCTCCTGAAATTGTCTGGTGTTTGGAAGTAAATTTGGGTGTGTAAAATTAGAACGTGTTTGTATTTTGCCCTATTGGTACCGAGATCTGAAATATAGTGTGAGGGAGAGCCTCTCTTATGAACTTTCATGCCACTGAATGGGGATGAGTTTTGATGCACGAGAGCCGTGCTAGTAGAAACACCAATGTATAAAACTATAGTTTTTTATAGTTGTTTTGTTGTTATGTTCCAATACCCCATGCGAATTACGAATGTCTGATGTCTATTTGTTGTTTGTGTTCTAGAATTTGAGTAGGCACTTGTAACTCAGCTGCATTCAGACAAGAACATTCTGTAGTTTGTTGACTATGATATAAAATTTTTAGTACAGGTAATATCAATTAAAATTATTCGCAACAAGATCACTGGCCAGCCTGAAGGTTACGGGTTTGTGGAATTTGTATCTCATGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGAACTCAGATGCCTGGAACAGAGCAAACTTTCAGATTGAATTGGGCCTCCTTTGGAATTGGAGAAAGGCGCCCTGATGCTGGCCCTGAGCACTCTATTTTTGTGGGGGATTTGGCTCCTGATGTTACAGACTATCTGTTGCAAGAGACCTTTAGAGCGCAATATCCATCTGTTAGGGGTGCTAAAGTTGTGACTGATCCAAACACTGGACGTTCAAAGGGATATGGGTTTGTTAAATTTGCTGATGAAAATGAAAGGAATCGAGCTATGTCCGAAATGAATGGTGTTTACTGCTCAACTAGGCCTATGCGTATTAGTGCAGCAACTCCTAAAAAAACCATTGGTGTTCAGCAGCAATACAGTCTAGGTAAAGGTAATGAATAATGAATGTTCAGCATTGCCTTTTCTCTTCTTCATTTTGTTGTCTCACGTTTTCTTGGAGTGAGTACCATCTTTTTTACTATTCATCCATGTCTCCAACGCTTCTATCCAAATAAATAAATCAATCAATCAATTTTCCATTCCAAGTTTCCAGCGCTTCTAGCTTTTCTATTTGCATAATTATATGTTATGCTTCATACCTTTGCTAGTAGTCATAGTCATAGATATTAAACTTTTGGACTTAAAATTTGAATTTCACCTTTGTCTATGGGAGTTCTTTGTTAGATAGTGCTAAGATAATTtTTTTTTTTTTTtGCATCATCAAACCCATAGCTAGTAGTTAATAGGTTTGATCATTCTGAAATTTTAGTTGATATTAGCTAAATTAGTGTTCTTGGGTCTATGATGAAAATGTGTTAAGTTAATTGTTATTAATGTATATGTCAAAAGAGAATTTTTCTCTTATTGAATATTTTGGATAAATATGTTTAATCAATGTCAAAAATATTTTCTAAATGCCATGAGGGGAGAGGATATCTGCAAATTTCAAATAAAAGAGAATTCATTGTTAATGTATTCGTATTTTTTtCCTTTGCCCTTGAAAAAATCTTAGGATGGGATGGTAATTTCCTATTTTAAAACTTGTACTTACCAATGTGTCTCTTGTCTTAGCAATGTACCCAGTTCCAGCGTACACTACATCCGTTCCTGTGCTTCCAGCAGATTATGATGCAAATAACACAACAGTAAGTCAAGGCCAAGTGATAGTTTTACTACGTCTGGTTTCTATGCTCATCTCTTACTATATTGTGCTTTGTGCAGATATTTGTTGGTAACTTGGATCCTAATATTACAGAGGAGGAGTTGAAGCAAACTTTTTTGCAGTTTGGTGAGATTGCTTATGTGAAAATTCCTGCCGGGAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGTGTGTTTGCATGATTAATTTTATTGATGTAAGTTGAGTAAATTGCATCTCTCCTTGCTCCTGTTTCTATGCCTTGAAAGAAGCTTGTGAATAATAATAAGGTTCAGGGAGTGGGGGGAAAACCGTCGTATGGAATAGATGTTAAGTTTTTGTGTATGTACGATTCTCCAAGATATGTTATTGACTTCTTAGTTCACATGAACATTTGGAATTTTGATTTAATATGTTCTCCCTATTGTGTCCGTGCAGGGCTTCAGCTGAAGAAGCTATCCAAAAGATGCAAGGAAAGATAATTGGTCAACAAGTGGTTCGCACTTCTTGGGGTAGAAATCCAGCTGCCAAGCAGGTAATTGTGAACTTCCTATTGAATTCCAGAACAAATATTTTCCTAGATATACCAGCGTACTTTTTCCACTGTGGATGTGATATGTATTTATGAGTTTTTTTAATTCATGCTTTTGCTCGGGTTTAACTTACAAAACCGTGATTGCTCAATGAGTTTGTGCCTAAATCATTAGGTGTGTTTTCTTTTATTTAGCCTGTGAATTTGATATTTCATATTTATGGAAAAATGGCTCACATTCATCTTAGTAAATAATTTTTGCTAAAATACCATTTTGGTCTGTGTACTTTGAGGTTTTTCAATTGCAGTCCATGTATTTTCAATTGTCTAATTTTAGTTCATGTAATTTCAAGAAATCTTAAATTTAGTCTCTCAAATTCTAATGACTCAAAGTACAAGGACTATGTTTATTTTGAACAAACCTCAGAAGTATAAGGACTGGAAGTACATGGACTGTAGATATTTTGAAAGTACAAGAACTCAAATTGCTCAAATACTTTTTTTTTTTtGTGAACGTTACCCTAGTACGGAAATAGGATGTAAAGGAAAGGCCTGGAAAGTGGGGATGAGGTATACCTCAGAAAAGTACAAAGACAATCATCTTACAAACCTTTAGCAGACAGAATCATTTACCTAAACTATAATATATTGTTTTAAATATTTGCTTAGCTAAATGGGTATTTATTGGTACAGGAAAACGACTCCTTGGTAAAATTGATTATGCATGTTATCTTTCTGTTAGCAAGCTCTCACAAGTCACAACAGCCTGTTTAATGCTCATAGTGAACTAGAGCTCACTCTATTAGGTAGACTGATGAAATGGTGATGAAATGGTGATGAATTTCAGGACTTGACTACTTGGGGTCAGCAAGTTGATCCAAACCAGTGGAGCGCTTACTATGGGTATGGAGGGACTTATGATGCTTATGGATATGGAGTTGTACAAGATCCATCTTTATATGGTTATGGTGCTTATTCGGGTTATGCCTCATATCCTCAACAGGTAAGTTTTGTTTtCTTTAGAAGGCAAGAGCTCCATACTCTTCTATGGTAGATAGTGGGCAAAGTGATTGTTATAATCTATTTGTTTGCAGCCATTTTTCAATTGGAGTCTATTGGGTGAATTCTAATTGCCCTTTCAAGATGCTAAGGCTTAGAATCAGAATAAAATGAGTGGGAATCAAGAGCAATATATTTATAGAAAAAGGTTCATCTATCCAGAAAATGTATTTGCCTTTTTGATCTTGGAACTATTCATTTTAACTCTTTTCTTTTAGGTTGACGGCGTACAAGATTTGGCCACAGTAGCTGGTGCGGTCCCTTCCGTAGAACAAGGAGAGGAATGGAATGATACGTTGGATACCCCGGATGTTGATTGGTATGGCTTTCTCTTTTGTCTCTAATTAGCTACAATACAAGATTAGGAATGTACAAGTTTCTATTTTTATTTTAACTTTGCATTGACATCAAGTTGTAAATTTGGCAGTTTAAATGATGCATACCTCTCTAAACATGAAAGCGCTATTTTAGGCTGGCCGTTATGGTTGACTACTTCATCACTGGTTAGGCAAACATGAGTGTGGTTATTGTTTGTCGAAATAGGTTGGCAGCGCGTGAGGGAAACTGGAGAAAAACTACAGTATGTGCTTTATATGCTTGACCATACTCGTAGTTGATGACATTGACCCATTGCATGTATGGTATAATGTGTTTGATTTAATAATACATTTTTTACTATAGGAACGGGGTTGCCAAGGTTATGTGCTTCGATGTTCTATGTATTATGATGGTGCTCTCTACTATTTGGAAATGGAATTTTCATTATCAGGAGAACATCTGCTTTAATCTGTACTGTGTCTCATTATGCTGAAGTGGACTATTTGTATTTTGAACAGGCAGCTTAATTGTTGTCAGATTAAATTTAACAAAAAGAAAATGAAGCTGAAA

mRNA sequence

TATTAACCGTACTTTGGAGTCCCACCGTCGTCCCCAGCGCGAAACACAAAAACCCTAGCAGTGGCAATTGCCAAGAATCCGCAGGTTTTCTTCAAATCTCTCAATTTTTGTATGTTTCTCTCCTAATTTATAAATTCTTTAGCTATTACCAAGCTTTTGCTTCCAAAATCTTTGGAGTCACGGATCAATTTACAGAGACAGCGAAGTCGGAGAGTGTAGAAACAATCTCTCAAACTTCACAAGAACATCAGCAAACTCAATTACCCGAAGCAATAAGATAATGCGTCAATAGATACAATGGCAACACTGGCAGGTCAACCAACTCACCATCAACCAACTACGGTGGAGGAAGTTAGAACGCTTTGGATAGGGGATTTGCAGTACTGGGTCGATGAGTCTTACCTTAATTCTTGCTTTGCTCACACTGGGGAGGTAATATCAATTAAAATTATTCGCAACAAGATCACTGGCCAGCCTGAAGGTTACGGGTTTGTGGAATTTGTATCTCATGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGAACTCAGATGCCTGGAACAGAGCAAACTTTCAGATTGAATTGGGCCTCCTTTGGAATTGGAGAAAGGCGCCCTGATGCTGGCCCTGAGCACTCTATTTTTGTGGGGGATTTGGCTCCTGATGTTACAGACTATCTGTTGCAAGAGACCTTTAGAGCGCAATATCCATCTGTTAGGGGTGCTAAAGTTGTGACTGATCCAAACACTGGACGTTCAAAGGGATATGGGTTTGTTAAATTTGCTGATGAAAATGAAAGGAATCGAGCTATGTCCGAAATGAATGGTGTTTACTGCTCAACTAGGCCTATGCGTATTAGTGCAGCAACTCCTAAAAAAACCATTGGTGTTCAGCAGCAATACAGTCTAGGTAAAGCAATGTACCCAGTTCCAGCGTACACTACATCCGTTCCTGTGCTTCCAGCAGATTATGATGCAAATAACACAACAATATTTGTTGGTAACTTGGATCCTAATATTACAGAGGAGGAGTTGAAGCAAACTTTTTTGCAGTTTGGTGAGATTGCTTATGTGAAAATTCCTGCCGGGAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCTTCAGCTGAAGAAGCTATCCAAAAGATGCAAGGAAAGATAATTGGTCAACAAGTGGTTCGCACTTCTTGGGGTAGAAATCCAGCTGCCAAGCAGGACTTGACTACTTGGGGTCAGCAAGTTGATCCAAACCAGTGGAGCGCTTACTATGGGTATGGAGGGACTTATGATGCTTATGGATATGGAGTTGTACAAGATCCATCTTTATATGGTTATGGTGCTTATTCGGGTTATGCCTCATATCCTCAACAGGTTGACGGCGTACAAGATTTGGCCACAGTAGCTGGTGCGGTCCCTTCCGTAGAACAAGGAGAGGAATGGAATGATACGTTGGATACCCCGGATGTTGATTGTTTAAATGATGCATACCTCTCTAAACATGAAAGCGCTATTTTAGGCTGGCCGTTATGGTTGACTACTTCATCACTGGTTAGGCAAACATGAGTGTGGTTATTGTTTGTCGAAATAGGTTGGCAGCGCGTGAGGGAAACTGGAGAAAAACTACAGAACGGGGTTGCCAAGGTTATGTGCTTCGATGTTCTATGTATTATGATGGTGCTCTCTACTATTTGGAAATGGAATTTTCATTATCAGGAGAACATCTGCTTTAATCTGTACTGTGTCTCATTATGCTGAAGTGGACTATTTGTATTTTGAACAGGCAGCTTAATTGTTGTCAGATTAAATTTAACAAAAAGAAAATGAAGCTGAAA

Coding sequence (CDS)

ATGGCAACACTGGCAGGTCAACCAACTCACCATCAACCAACTACGGTGGAGGAAGTTAGAACGCTTTGGATAGGGGATTTGCAGTACTGGGTCGATGAGTCTTACCTTAATTCTTGCTTTGCTCACACTGGGGAGGTAATATCAATTAAAATTATTCGCAACAAGATCACTGGCCAGCCTGAAGGTTACGGGTTTGTGGAATTTGTATCTCATGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGAACTCAGATGCCTGGAACAGAGCAAACTTTCAGATTGAATTGGGCCTCCTTTGGAATTGGAGAAAGGCGCCCTGATGCTGGCCCTGAGCACTCTATTTTTGTGGGGGATTTGGCTCCTGATGTTACAGACTATCTGTTGCAAGAGACCTTTAGAGCGCAATATCCATCTGTTAGGGGTGCTAAAGTTGTGACTGATCCAAACACTGGACGTTCAAAGGGATATGGGTTTGTTAAATTTGCTGATGAAAATGAAAGGAATCGAGCTATGTCCGAAATGAATGGTGTTTACTGCTCAACTAGGCCTATGCGTATTAGTGCAGCAACTCCTAAAAAAACCATTGGTGTTCAGCAGCAATACAGTCTAGGTAAAGCAATGTACCCAGTTCCAGCGTACACTACATCCGTTCCTGTGCTTCCAGCAGATTATGATGCAAATAACACAACAATATTTGTTGGTAACTTGGATCCTAATATTACAGAGGAGGAGTTGAAGCAAACTTTTTTGCAGTTTGGTGAGATTGCTTATGTGAAAATTCCTGCCGGGAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCTTCAGCTGAAGAAGCTATCCAAAAGATGCAAGGAAAGATAATTGGTCAACAAGTGGTTCGCACTTCTTGGGGTAGAAATCCAGCTGCCAAGCAGGACTTGACTACTTGGGGTCAGCAAGTTGATCCAAACCAGTGGAGCGCTTACTATGGGTATGGAGGGACTTATGATGCTTATGGATATGGAGTTGTACAAGATCCATCTTTATATGGTTATGGTGCTTATTCGGGTTATGCCTCATATCCTCAACAGGTTGACGGCGTACAAGATTTGGCCACAGTAGCTGGTGCGGTCCCTTCCGTAGAACAAGGAGAGGAATGGAATGATACGTTGGATACCCCGGATGTTGATTGTTTAAATGATGCATACCTCTCTAAACATGAAAGCGCTATTTTAGGCTGGCCGTTATGGTTGACTACTTCATCACTGGTTAGGCAAACATGA

Protein sequence

MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVRQT*

Homology

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BLAST of Cucsa.301810.2 vs. Swiss-Prot
Match: R47BP_ARATH (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 1.1e-162
Identity = 291/421 (69.12%), Postives = 330/421 (78.38%), Query Frame = 1


Query: 7   QPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFV 66
           Q ++H P T+EEVRTLWIGDLQYWVDE+YL SCF+ TGE++S+K+IRNKITGQPEGYGF+
Sbjct: 11  QGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFI 70

Query: 67  EFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 126
           EF+SHAAAER LQTYNGTQMPGTE TFRLNWASFG G++  DAGP+HSIFVGDLAPDVTD
Sbjct: 71  EFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTD 130

Query: 127 YLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMR 186
           YLLQETFR  Y SVRGAKVVTDP+TGRSKGYGFVKFA+E+ERNRAM+EMNG+YCSTRPMR
Sbjct: 131 YLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMR 190

Query: 187 ISAATPKKTIGVQQQYSLGKAMYPVP-----AYTTSVPVLPADYDANNTTIFVGNLDPNI 246
           ISAATPKK +GVQQQY + KA+YPV      A      V P + D   TTI V NLD N+
Sbjct: 191 ISAATPKKNVGVQQQY-VTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNV 250

Query: 247 TEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGR 306
           TEEELK+ F Q GE+ YVKIPA KG G+VQF TR SAEEA+Q+MQG++IGQQ VR SW +
Sbjct: 251 TEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 310

Query: 307 NPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVD 366
           NP   QD   W  Q DPNQW+ YYGYG  YDAY YG  QDPS+Y YG Y GY  YPQQ +
Sbjct: 311 NPG--QD--GWVTQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGY-GYPQYPQQGE 370

Query: 367 GVQDLA-TVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR 422
           G QD++ + AG V   EQ  E  D L TPDVD LN AYLS H SAILG P+W  TSSL  
Sbjct: 371 GTQDISNSAAGGVAGAEQ--ELYDPLATPDVDKLNAAYLSVHASAILGRPMWQRTSSLTS 422

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BLAST of Cucsa.301810.2 vs. Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 6.9e-117
Identity = 223/361 (61.77%), Postives = 261/361 (72.30%), Query Frame = 1


Query: 1   MATLAGQPTHHQPT-TVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQ 60
           MAT    P+   PT    EVR+LWIGDLQYW+DE+YL++CF HTGE++S K+IRNK TGQ
Sbjct: 67  MATTNPNPS---PTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQ 126

Query: 61  PEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGD 120
            EGYGF+EF SHAAAE ILQTYNGT MP  EQ FR+NWAS G GERR D+  EH+IFVGD
Sbjct: 127 SEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA-EHTIFVGD 186

Query: 121 LAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVY 180
           LA DVTDY+LQETF++ Y SVRGAKVVTD  TGRSKGYGFVKFADE+E+ RAM+EMNGV 
Sbjct: 187 LAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVL 246

Query: 181 CSTRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDP 240
           CSTRPMRI  A  KK +G  Q     KA Y  P  T        + D NNTTIFVG LDP
Sbjct: 247 CSTRPMRIGPAANKKPVGTPQ-----KATYQNPQAT------QGESDPNNTTIFVGGLDP 306

Query: 241 NITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSW 300
            + EE L+Q F  +GE+ +VKI AGK CGFVQFGTRASAE+A+  + G  +G Q +R SW
Sbjct: 307 TVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSW 366

Query: 301 GRNPAAKQ-DLTTWGQQVDPNQWSAYYGYGGTYDAYGYG-VVQDPSLYGYGAYSGYASYP 359
           GR+P++KQ D T WG         AYYGYG  Y+AYGY    QDP++Y YG Y GYA+Y 
Sbjct: 367 GRSPSSKQTDQTQWG-----GSGGAYYGYGQGYEAYGYAPPAQDPNMY-YGNYPGYANYQ 406

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BLAST of Cucsa.301810.2 vs. Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 2.8e-110
Identity = 207/353 (58.64%), Postives = 257/353 (72.80%), Query Frame = 1


Query: 8   PTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVE 67
           PT  Q ++ E+ +T+WIGDLQ W+DESYL+SCF+  GEVIS+KIIRNK TGQ E YGFVE
Sbjct: 73  PTQIQSSS-EDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVE 132

Query: 68  FVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDY 127
           F +HAAAE++LQ+YNGT MP TEQ FRLNWA F  GE+R + G + SIFVGDLA DVTD 
Sbjct: 133 FNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDT 192

Query: 128 LLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRI 187
           +L++TF ++YPS++GAKVV D NTG SKGYGFV+F DE+ER+RAM+EMNGVYCS+R MRI
Sbjct: 193 MLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRI 252

Query: 188 SAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVL---PADYDANNTTIFVGNLDPNITEE 247
             ATPKK     +QYS  +A+     Y ++        +D D++NTTIFVG LD  +T+E
Sbjct: 253 GVATPKKP-SAHEQYS-SQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDE 312

Query: 248 ELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPA 307
           EL+Q+F QFGE+  VKIPAGKGCGFVQF  R+SA+EAIQK+ G IIG+Q VR SWGR+PA
Sbjct: 313 ELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPA 372

Query: 308 AKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVV--QDPSLYGYGAYSGYAS 356
            KQ  T  G     +QW+  Y     Y  YGYG    QD  +Y  GA  G +S
Sbjct: 373 NKQMRTDSG-----SQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASS 417

[Close]

BLAST of Cucsa.301810.2 vs. Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 3.2e-106
Identity = 197/349 (56.45%), Postives = 249/349 (71.35%), Query Frame = 1


Query: 5   AGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYG 64
           A  P   QPTT +E+RTLWIGDLQYW+DE++L  CFAHTGE++S K+IRNK TGQ EGYG
Sbjct: 47  AAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106

Query: 65  FVEFVSHAAAERILQTYNGTQMPG-TEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPD 124
           F+EF SHAAAER+LQT+N   +P   +Q FRLNWAS   G++R D+ P+++IFVGDLA D
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAAD 166

Query: 125 VTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTR 184
           VTDY+L ETFRA YPSV+GAKVV D  TGR+KGYGFV+F+DE+E+ RAM+EMNGV CSTR
Sbjct: 167 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTR 226

Query: 185 PMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITE 244
           PMRI  A  KK +  Q+            +Y +S   +  D D NNTT+FVG LD ++T+
Sbjct: 227 PMRIGPAASKKGVTGQRD-----------SYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 286

Query: 245 EELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNP 304
           + LK  F Q+GEI +VKIPAGK CGFVQF  ++ AEEA++ + G  +G   VR SWGR+P
Sbjct: 287 DHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSP 346

Query: 305 AAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSG 353
           + K       Q  DP+Q+  Y GYG   + YGY + QDP+ Y YG YSG
Sbjct: 347 SNK-------QSGDPSQF-YYGGYGQGQEQYGYTMPQDPNAY-YGGYSG 374

[Close]

BLAST of Cucsa.301810.2 vs. Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 3.9e-104
Identity = 195/353 (55.24%), Postives = 238/353 (67.42%), Query Frame = 1


Query: 13  PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
           P +  +V++LWIGDLQ W+DE+Y+ S FA +GE  S K+IRNK+TGQ EGYGF+EFVSH+
Sbjct: 53  PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHS 112

Query: 73  AAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDYLLQE 132
            AER+LQTYNG  MP TEQTFRLNWA  G GE+R    GP+H+IFVGDLAP+VTDY+L +
Sbjct: 113 VAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSD 172

Query: 133 TFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAAT 192
           TF+  Y SV+GAKVV D  TGRSKGYGFV+FADENE+ RAM+EMNG YCSTRPMRI  A 
Sbjct: 173 TFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA 232

Query: 193 PKKTIGVQQQYSLGKAMYPVPA-YTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTF 252
            K  + +Q            PA Y  +      D D NNTTIFVG LD N+T++ELK  F
Sbjct: 233 NKNALPMQ------------PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIF 292

Query: 253 LQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLT 312
            QFGE+ +VKIP GK CGFVQ+  +ASAE A+  + G  +G Q +R SWGR+P  + D  
Sbjct: 293 GQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQA 352

Query: 313 TWGQQVDPNQWSAYYGY-GGTYDAYGYGV---VQDPSLYGYGAYSGYASYPQQ 360
            W           YYGY       YGY      QDP+ Y YG Y+GY +Y QQ
Sbjct: 353 QW-------NGGGYYGYPPQPQGGYGYAAQPPTQDPNAY-YGGYTGYGNYQQQ 385

[Close]

BLAST of Cucsa.301810.2 vs. TrEMBL
Match: A0A0A0KKV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162020 PE=4 SV=1)

HSP 1 Score: 709.9 bits (1831), Expect = 1.8e-201
Identity = 355/395 (89.87%), Postives = 360/395 (91.14%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTT+   N    
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTLVNNNKVQG 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGF-VQFGTRASAEEAIQKMQGKIIGQQVVRTSW 300
           +            G+ +Y         G  V+F   ASAEEAIQKMQGKIIGQQVVRTSW
Sbjct: 241 VG-----------GKPSY---------GIDVKFLCMASAEEAIQKMQGKIIGQQVVRTSW 300

Query: 301 GRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           GRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ
Sbjct: 301 GRNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360

Query: 361 VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCL 395
           VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVD L
Sbjct: 361 VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDWL 375

[Close]

BLAST of Cucsa.301810.2 vs. TrEMBL
Match: M5WM59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005940mg PE=4 SV=1)

HSP 1 Score: 694.9 bits (1792), Expect = 6.1e-197
Identity = 340/417 (81.53%), Postives = 366/417 (87.77%), Query Frame = 1


Query: 7   QPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFV 66
           Q  HHQPT+VEEVRTLWIGDLQYWVDE+YL +CFAHTGEVISIKIIRNKITGQPEGYGFV
Sbjct: 20  QHHHHQPTSVEEVRTLWIGDLQYWVDENYLTTCFAHTGEVISIKIIRNKITGQPEGYGFV 79

Query: 67  EFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 126
           EFVSHAAAER+L  YNGT MPGTEQ FRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD
Sbjct: 80  EFVSHAAAERVLHAYNGTLMPGTEQNFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 139

Query: 127 YLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMR 186
           ++LQETFR QY SVRGAKVVTDPNTGRSKGYGFVKFADE ERNRAM+EMNGVYCSTR MR
Sbjct: 140 FMLQETFRTQYSSVRGAKVVTDPNTGRSKGYGFVKFADETERNRAMTEMNGVYCSTRQMR 199

Query: 187 ISAATPKKTIGVQQQYSLGKAMYPVPAYTT-SVPVLPADYDANNTTIFVGNLDPNITEEE 246
           ISAATPKKT G QQQY   K +YP PAYTT +VPVLPADYDANNTTIFVGNLDPN+TEEE
Sbjct: 200 ISAATPKKTTGFQQQYGATK-VYPNPAYTTPAVPVLPADYDANNTTIFVGNLDPNVTEEE 259

Query: 247 LKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAA 306
           LKQ+F+QFGEI YVKIP GKGCGFVQFGTRASAEEAIQ+MQG +IGQQVVR SWGR+P A
Sbjct: 260 LKQSFMQFGEIPYVKIPVGKGCGFVQFGTRASAEEAIQRMQGMMIGQQVVRISWGRSPTA 319

Query: 307 KQDLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVDGVQ 366
           KQD+  ++ QQVDP+QW+AYYGYG  YDAY YG  QDPSLY YGAY+GY  YPQQV+GVQ
Sbjct: 320 KQDVPGSFAQQVDPSQWAAYYGYGQGYDAYAYGATQDPSLYAYGAYAGYGQYPQQVEGVQ 379

Query: 367 DLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVRQ 422
           DLA + G VPSVEQ EE +D L TPDVD LN AYLS H  AILG P+WL TSS  +Q
Sbjct: 380 DLAAMGGTVPSVEQREELDDPLATPDVDKLNAAYLSVHGRAILGRPMWLRTSSFTQQ 435

[Close]

BLAST of Cucsa.301810.2 vs. TrEMBL
Match: A0A061GTF5_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1)

HSP 1 Score: 683.3 bits (1762), Expect = 1.8e-193
Identity = 329/418 (78.71%), Postives = 360/418 (86.12%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MAT+A    HH PT++EEVRTLWIGDLQ+WVDESYLNSCFAHTGE++SIKIIRNKITGQP
Sbjct: 1   MATIAASQHHHHPTSLEEVRTLWIGDLQFWVDESYLNSCFAHTGELVSIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGT MPGT+Q FRLNWASFGIGERR D GPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTPMPGTDQMFRLNWASFGIGERRTDPGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRA YPSVRGAKVVTDPNTGRSKGYGFVKF+DE ERNRAM+EMNGVYC
Sbjct: 121 APDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDEIERNRAMTEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STR MRISAATPKK  G QQQY++ KA+YP PAYTT V VLP D D+ NTTIF+GNLDPN
Sbjct: 181 STRAMRISAATPKKPTGFQQQYAVAKAVYPAPAYTTPVQVLPPDNDSTNTTIFIGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           +TEEELKQ F   G+I YVKIPA KGCGFVQF TR SAEEAIQ+MQG++IGQQ+VR SWG
Sbjct: 241 VTEEELKQLFSPLGDIVYVKIPAAKGCGFVQFATRTSAEEAIQRMQGQMIGQQLVRISWG 300

Query: 301 RNPAAKQDLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           R+P AKQDL  +WG Q DP+QWSAYYGYG +YDAY YG  QDPSLY YGAY+GYA YPQQ
Sbjct: 301 RSPTAKQDLPGSWGTQADPSQWSAYYGYGQSYDAYAYGATQDPSLYAYGAYAGYAQYPQQ 360

Query: 361 VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSS 418
           V+G QD+A +AGA P++EQ +E  D L TPDVD LN  YLS H SAILG PLWL T S
Sbjct: 361 VEGSQDMAAMAGAFPALEQRDESYDPLATPDVDKLNTTYLSVHGSAILGRPLWLRTFS 418

[Close]

BLAST of Cucsa.301810.2 vs. TrEMBL
Match: A0A061GZ97_THECC (RNA-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1)

HSP 1 Score: 680.2 bits (1754), Expect = 1.6e-192
Identity = 328/418 (78.47%), Postives = 358/418 (85.65%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MAT+A    HH PT++EEVRTLWIGDLQ+WVDESYLNSCFAHTGE++SIKIIRNKITGQP
Sbjct: 1   MATIAASQHHHHPTSLEEVRTLWIGDLQFWVDESYLNSCFAHTGELVSIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGT MPGT+Q FRLNWASFGIGERR D GPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTPMPGTDQMFRLNWASFGIGERRTDPGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRA YPSVRGAKVVTDPNTGRSKGYGFVKF+DE ERNRAM+EMNGVYC
Sbjct: 121 APDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDEIERNRAMTEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STR MRISAATPKK  G QQQY++ KA+YP PAYTT V VLP D D+ NTTIF+GNLDPN
Sbjct: 181 STRAMRISAATPKKPTGFQQQYAVAKAVYPAPAYTTPVQVLPPDNDSTNTTIFIGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           +TEEELKQ F   G+I YVKIPA KGCGFVQF TR SAEEAIQ+MQG++IGQQ+VR SWG
Sbjct: 241 VTEEELKQLFSPLGDIVYVKIPAAKGCGFVQFATRTSAEEAIQRMQGQMIGQQLVRISWG 300

Query: 301 RNPAAKQDLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQ 360
           R+P AKQDL  +WG Q DP+QWSAYYGYG +YDAY YG  QDPSLY YGAY+GYA YPQQ
Sbjct: 301 RSPTAKQDLPGSWGTQADPSQWSAYYGYGQSYDAYAYGATQDPSLYAYGAYAGYAQYPQQ 360

Query: 361 VDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSS 418
             G QD+A +AGA P++EQ +E  D L TPDVD LN  YLS H SAILG PLWL T S
Sbjct: 361 ARGSQDMAAMAGAFPALEQRDESYDPLATPDVDKLNTTYLSVHGSAILGRPLWLRTFS 418

[Close]

BLAST of Cucsa.301810.2 vs. TrEMBL
Match: A0A0B0N9B4_GOSAR (Polyadenylate-binding RBP47B'-like protein OS=Gossypium arboreum GN=F383_13589 PE=4 SV=1)

HSP 1 Score: 671.4 bits (1731), Expect = 7.2e-190
Identity = 330/420 (78.57%), Postives = 354/420 (84.29%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MAT+     HH PT++EEVRTLWIGDLQ+WVDESYLNSCFAHTGE++SIKIIRNKITGQP
Sbjct: 1   MATITATQQHHHPTSLEEVRTLWIGDLQFWVDESYLNSCFAHTGELVSIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSH AAERILQTYNGT MPGT+Q FRLNWASFGIGERR D G EHSIFVGDL
Sbjct: 61  EGYGFVEFVSHQAAERILQTYNGTPMPGTDQMFRLNWASFGIGERRTDPGLEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           A DVTDYLLQETFRA YPSVRGAKVVTDPNTGRSKGYGFVKFADE ERNRAM+EMNGVYC
Sbjct: 121 ASDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNRAMTEMNGVYC 180

Query: 181 STRPMRISAATPKK-TIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDP 240
           STR MRISAATPKK T G QQQY++ KA+YPVPAYTT + VLP D D  NTTIFVGNLDP
Sbjct: 181 STRAMRISAATPKKTTAGFQQQYAVAKAVYPVPAYTTPMQVLPPDNDNTNTTIFVGNLDP 240

Query: 241 NITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSW 300
           N+TEEELKQ F   GEI YVKIPA KGCGFVQF TR SAEEAIQ+MQG++IGQQVVR SW
Sbjct: 241 NVTEEELKQFFSPLGEIVYVKIPAAKGCGFVQFATRTSAEEAIQRMQGQMIGQQVVRISW 300

Query: 301 GRNPAAKQDLT-TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQ 360
           GR+P AKQDL   WG QVDPNQWSAYYGYG  YDAY YG  QDPSLY YGAY+GYA Y Q
Sbjct: 301 GRSPTAKQDLPGAWGTQVDPNQWSAYYGYGQGYDAYAYGATQDPSLYAYGAYAGYAQYSQ 360

Query: 361 QVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSL 419
           Q++G Q++A +  AVP VEQ EE  D L TPDVD LN  YLS H SAI+G PLWL TS L
Sbjct: 361 QIEGSQEMAAITAAVPGVEQREESYDPLATPDVDKLNATYLSVHGSAIVGRPLWLRTSFL 420

[Close]

BLAST of Cucsa.301810.2 vs. TAIR10
Match: AT5G19350.1 (AT5G19350.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 574.3 bits (1479), Expect = 6.1e-164
Identity = 291/421 (69.12%), Postives = 330/421 (78.38%), Query Frame = 1


Query: 7   QPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFV 66
           Q ++H P T+EEVRTLWIGDLQYWVDE+YL SCF+ TGE++S+K+IRNKITGQPEGYGF+
Sbjct: 11  QGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFI 70

Query: 67  EFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 126
           EF+SHAAAER LQTYNGTQMPGTE TFRLNWASFG G++  DAGP+HSIFVGDLAPDVTD
Sbjct: 71  EFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTD 130

Query: 127 YLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMR 186
           YLLQETFR  Y SVRGAKVVTDP+TGRSKGYGFVKFA+E+ERNRAM+EMNG+YCSTRPMR
Sbjct: 131 YLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMR 190

Query: 187 ISAATPKKTIGVQQQYSLGKAMYPVP-----AYTTSVPVLPADYDANNTTIFVGNLDPNI 246
           ISAATPKK +GVQQQY + KA+YPV      A      V P + D   TTI V NLD N+
Sbjct: 191 ISAATPKKNVGVQQQY-VTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNV 250

Query: 247 TEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGR 306
           TEEELK+ F Q GE+ YVKIPA KG G+VQF TR SAEEA+Q+MQG++IGQQ VR SW +
Sbjct: 251 TEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 310

Query: 307 NPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQVD 366
           NP   QD   W  Q DPNQW+ YYGYG  YDAY YG  QDPS+Y YG Y GY  YPQQ +
Sbjct: 311 NPG--QD--GWVTQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGY-GYPQYPQQGE 370

Query: 367 GVQDLA-TVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR 422
           G QD++ + AG V   EQ  E  D L TPDVD LN AYLS H SAILG P+W  TSSL  
Sbjct: 371 GTQDISNSAAGGVAGAEQ--ELYDPLATPDVDKLNAAYLSVHASAILGRPMWQRTSSLTS 422

[Close]

BLAST of Cucsa.301810.2 vs. TAIR10
Match: AT1G11650.2 (AT1G11650.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 386.7 bits (992), Expect = 1.8e-107
Identity = 197/349 (56.45%), Postives = 249/349 (71.35%), Query Frame = 1


Query: 5   AGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYG 64
           A  P   QPTT +E+RTLWIGDLQYW+DE++L  CFAHTGE++S K+IRNK TGQ EGYG
Sbjct: 47  AAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106

Query: 65  FVEFVSHAAAERILQTYNGTQMPG-TEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPD 124
           F+EF SHAAAER+LQT+N   +P   +Q FRLNWAS   G++R D+ P+++IFVGDLA D
Sbjct: 107 FIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAAD 166

Query: 125 VTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTR 184
           VTDY+L ETFRA YPSV+GAKVV D  TGR+KGYGFV+F+DE+E+ RAM+EMNGV CSTR
Sbjct: 167 VTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTR 226

Query: 185 PMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITE 244
           PMRI  A  KK +  Q+            +Y +S   +  D D NNTT+FVG LD ++T+
Sbjct: 227 PMRIGPAASKKGVTGQRD-----------SYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 286

Query: 245 EELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNP 304
           + LK  F Q+GEI +VKIPAGK CGFVQF  ++ AEEA++ + G  +G   VR SWGR+P
Sbjct: 287 DHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSP 346

Query: 305 AAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSG 353
           + K       Q  DP+Q+  Y GYG   + YGY + QDP+ Y YG YSG
Sbjct: 347 SNK-------QSGDPSQF-YYGGYGQGQEQYGYTMPQDPNAY-YGGYSG 374

[Close]

BLAST of Cucsa.301810.2 vs. TAIR10
Match: AT5G54900.1 (AT5G54900.1 RNA-binding protein 45A)

HSP 1 Score: 379.8 bits (974), Expect = 2.2e-105
Identity = 195/353 (55.24%), Postives = 238/353 (67.42%), Query Frame = 1


Query: 13  PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
           P +  +V++LWIGDLQ W+DE+Y+ S FA +GE  S K+IRNK+TGQ EGYGF+EFVSH+
Sbjct: 53  PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHS 112

Query: 73  AAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDYLLQE 132
            AER+LQTYNG  MP TEQTFRLNWA  G GE+R    GP+H+IFVGDLAP+VTDY+L +
Sbjct: 113 VAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSD 172

Query: 133 TFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAAT 192
           TF+  Y SV+GAKVV D  TGRSKGYGFV+FADENE+ RAM+EMNG YCSTRPMRI  A 
Sbjct: 173 TFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA 232

Query: 193 PKKTIGVQQQYSLGKAMYPVPA-YTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTF 252
            K  + +Q            PA Y  +      D D NNTTIFVG LD N+T++ELK  F
Sbjct: 233 NKNALPMQ------------PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIF 292

Query: 253 LQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLT 312
            QFGE+ +VKIP GK CGFVQ+  +ASAE A+  + G  +G Q +R SWGR+P  + D  
Sbjct: 293 GQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQA 352

Query: 313 TWGQQVDPNQWSAYYGY-GGTYDAYGYGV---VQDPSLYGYGAYSGYASYPQQ 360
            W           YYGY       YGY      QDP+ Y YG Y+GY +Y QQ
Sbjct: 353 QW-------NGGGYYGYPPQPQGGYGYAAQPPTQDPNAY-YGGYTGYGNYQQQ 385

[Close]

BLAST of Cucsa.301810.2 vs. TAIR10
Match: AT1G47500.1 (AT1G47500.1 RNA-binding protein 47C')

HSP 1 Score: 377.1 bits (967), Expect = 1.4e-104
Identity = 204/356 (57.30%), Postives = 246/356 (69.10%), Query Frame = 1


Query: 11  HQPTTVEEVRTLWIGDLQYWVDESYLNSCF--AHTGEVISIKIIRNKITGQPEGYGFVEF 70
           HQ     E +T+W+GDLQ W+DE+YLNS F  A   E++S+K+IRNK  G  EGYGFVEF
Sbjct: 94  HQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEF 153

Query: 71  VSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDY 130
            SH  A+++LQ +NG  MP T+Q FRLNWASF  GE+R  + GP+ SIFVGDLAPDV+D 
Sbjct: 154 ESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDA 213

Query: 131 LLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRI 190
           LL ETF  +YPSV+ AKVV D NTGRSKGYGFV+F DENER +AM+EMNGV CS+R MRI
Sbjct: 214 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273

Query: 191 SAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELK 250
             ATP+KT G QQQ        P  A+T S      + D  NTTIFVG LD ++T+E+LK
Sbjct: 274 GPATPRKTNGYQQQ----GGYMPSGAFTRS------EGDTINTTIFVGGLDSSVTDEDLK 333

Query: 251 QTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQ 310
           Q F +FGEI  VKIP GKGCGFVQF  R +AEEA++K+ G +IG+Q VR SWGRNPA KQ
Sbjct: 334 QPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 393

Query: 311 DLTTWGQQ-VDPNQWSAYYGYGGTYDAYGYGVVQ-DPSLYGYGA-YSGYASYPQQV 361
               +G Q VDP     YYG G  Y+ YGY V Q DP +Y     Y  Y  + QQV
Sbjct: 394 PRDKYGNQWVDP-----YYG-GQFYNGYGYMVPQPDPRMYPAAPYYPMYGGHQQQV 433

[Close]

BLAST of Cucsa.301810.2 vs. TAIR10
Match: AT1G47490.1 (AT1G47490.1 RNA-binding protein 47C)

HSP 1 Score: 372.1 bits (954), Expect = 4.6e-103
Identity = 199/356 (55.90%), Postives = 245/356 (68.82%), Query Frame = 1


Query: 11  HQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGE--VISIKIIRNKITGQPEGYGFVEF 70
           HQ     E +T+W+GDL +W+DE+YLNS FA   E  ++S+K+IRNK  G  EGYGFVEF
Sbjct: 92  HQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEF 151

Query: 71  VSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPEHSIFVGDLAPDVTDY 130
            SH  A+++L+ +NGT MP T+Q FRLNWASF  GE+R  + GP+ SIFVGDL+PDV+D 
Sbjct: 152 ESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDN 211

Query: 131 LLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRI 190
           LL ETF  +YPSV+ AKVV D NTGRSKGYGFV+F DENER +AM+EMNGV CS+R MRI
Sbjct: 212 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271

Query: 191 SAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELK 250
             ATP+KT G QQQ            Y  +  +   + D  NTTIFVG LD ++T+E+LK
Sbjct: 272 GPATPRKTNGYQQQ----------GGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLK 331

Query: 251 QTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQ 310
           Q F +FGEI  VKIP GKGCGFVQF  R +AEEA++K+ G +IG+Q VR SWGRNPA KQ
Sbjct: 332 QPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 391

Query: 311 DLTTWGQQ-VDPNQWSAYYGYGGTYDAYGYGVVQ-DPSLYGYGA-YSGYASYPQQV 361
               +G Q VDP     YYG G  Y+ YGY V Q DP +Y     Y  Y  + QQV
Sbjct: 392 PRDKYGNQWVDP-----YYG-GQFYNGYGYMVPQPDPRMYPAAPYYPMYGGHQQQV 431

[Close]

BLAST of Cucsa.301810.2 vs. NCBI nr
Match: gi|449469386|ref|XP_004152401.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis sativus])

HSP 1 Score: 873.2 bits (2255), Expect = 1.8e-250
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV 360
           RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV
Sbjct: 301 RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV 360

Query: 361 DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR 420
           DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR
Sbjct: 361 DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR 420

Query: 421 QT 423
           QT
Sbjct: 421 QT 422

[Close]

BLAST of Cucsa.301810.2 vs. NCBI nr
Match: gi|778700063|ref|XP_011654802.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis sativus])

HSP 1 Score: 867.1 bits (2239), Expect = 1.3e-248
Identity = 422/427 (98.83%), Postives = 422/427 (98.83%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQ-----DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360
           RNPAAKQ     DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS
Sbjct: 301 RNPAAKQENDSLDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360

Query: 361 YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT 420
           YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT
Sbjct: 361 YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT 420

Query: 421 SSLVRQT 423
           SSLVRQT
Sbjct: 421 SSLVRQT 427

[Close]

BLAST of Cucsa.301810.2 vs. NCBI nr
Match: gi|659073474|ref|XP_008437079.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis melo])

HSP 1 Score: 864.8 bits (2233), Expect = 6.4e-248
Identity = 419/422 (99.29%), Postives = 419/422 (99.29%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASYPQQV 360
           RNPAAKQDL TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLY YGAYSGYASYPQQV
Sbjct: 301 RNPAAKQDLATWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYAYGAYSGYASYPQQV 360

Query: 361 DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTSSLVR 420
           DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVD LNDAYLSKHESAILGWPLWLTTSSLVR
Sbjct: 361 DGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDYLNDAYLSKHESAILGWPLWLTTSSLVR 420

Query: 421 QT 423
           QT
Sbjct: 421 QT 422

[Close]

BLAST of Cucsa.301810.2 vs. NCBI nr
Match: gi|659073468|ref|XP_008437076.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis melo])

HSP 1 Score: 858.6 bits (2217), Expect = 4.6e-246
Identity = 419/427 (98.13%), Postives = 419/427 (98.13%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQ-----DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360
           RNPAAKQ     DL TWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLY YGAYSGYAS
Sbjct: 301 RNPAAKQEIDSLDLATWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYAYGAYSGYAS 360

Query: 361 YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT 420
           YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVD LNDAYLSKHESAILGWPLWLTT
Sbjct: 361 YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDYLNDAYLSKHESAILGWPLWLTT 420

Query: 421 SSLVRQT 423
           SSLVRQT
Sbjct: 421 SSLVRQT 427

[Close]

BLAST of Cucsa.301810.2 vs. NCBI nr
Match: gi|778700075|ref|XP_011654805.1| (PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Cucumis sativus])

HSP 1 Score: 857.8 bits (2215), Expect = 7.8e-246
Identity = 420/427 (98.36%), Postives = 420/427 (98.36%), Query Frame = 1


Query: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60
           MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP
Sbjct: 1   MATLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQP 60

Query: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120
           EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL
Sbjct: 61  EGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDL 120

Query: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180
           APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC
Sbjct: 121 APDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYC 180

Query: 181 STRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240
           STRPMRISAATPKKTIGVQQQYSL  AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN
Sbjct: 181 STRPMRISAATPKKTIGVQQQYSL--AMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPN 240

Query: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300
           ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG
Sbjct: 241 ITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 300

Query: 301 RNPAAKQ-----DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360
           RNPAAKQ     DLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS
Sbjct: 301 RNPAAKQENDSLDLTTWGQQVDPNQWSAYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYAS 360

Query: 361 YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT 420
           YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT
Sbjct: 361 YPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTT 420

Query: 421 SSLVRQT 423
           SSLVRQT
Sbjct: 421 SSLVRQT 425

The following BLAST results are available for this feature:

BLAST of Cucsa.301810.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R47BP_ARATH	1.1e-162	69.12	Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV...	[more]
RBP45_NICPL	6.9e-117	61.77	Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 S...	[more]
RBP47_NICPL	2.8e-110	58.64	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 S...	[more]
RB45B_ARATH	3.2e-106	56.45	Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1	[more]
RB45A_ARATH	3.9e-104	55.24	Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1	[more]

BLAST of Cucsa.301810.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKV7_CUCSA	1.8e-201	89.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162020 PE=4 SV=1	[more]
M5WM59_PRUPE	6.1e-197	81.53	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005940mg PE=4 SV=1	[more]
A0A061GTF5_THECC	1.8e-193	78.71	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1	[more]
A0A061GZ97_THECC	1.6e-192	78.47	RNA-binding family protein isoform 3 OS=Theobroma cacao GN=TCM_040677 PE=4 SV=1	[more]
A0A0B0N9B4_GOSAR	7.2e-190	78.57	Polyadenylate-binding RBP47B'-like protein OS=Gossypium arboreum GN=F383_13589 P...	[more]

BLAST of Cucsa.301810.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19350.1	6.1e-164	69.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G11650.2	1.8e-107	56.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54900.1	2.2e-105	55.24	RNA-binding protein 45A	[more]
AT1G47500.1	1.4e-104	57.30	RNA-binding protein 47C'	[more]
AT1G47490.1	4.6e-103	55.90	RNA-binding protein 47C	[more]

BLAST of Cucsa.301810.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469386\|ref\|XP_004152401.1\|	1.8e-250	100.00	PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis sativus]	[more]
gi\|778700063\|ref\|XP_011654802.1\|	1.3e-248	98.83	PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis sativus]	[more]
gi\|659073474\|ref\|XP_008437079.1\|	6.4e-248	99.29	PREDICTED: polyadenylate-binding protein RBP47B' isoform X3 [Cucumis melo]	[more]
gi\|659073468\|ref\|XP_008437076.1\|	4.6e-246	98.13	PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Cucumis melo]	[more]
gi\|778700075\|ref\|XP_011654805.1\|	7.8e-246	98.36	PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.301810	Cucsa.301810	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.2	Cucsa.301810.2-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.2.five_prime_UTR.1	Cucsa.301810.2.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.2.CDS.1	Cucsa.301810.2.CDS.1	CDS
Cucsa.301810.2.CDS.2	Cucsa.301810.2.CDS.2	CDS
Cucsa.301810.2.CDS.3	Cucsa.301810.2.CDS.3	CDS
Cucsa.301810.2.CDS.4	Cucsa.301810.2.CDS.4	CDS
Cucsa.301810.2.CDS.5	Cucsa.301810.2.CDS.5	CDS
Cucsa.301810.2.CDS.6	Cucsa.301810.2.CDS.6	CDS
Cucsa.301810.2.CDS.7	Cucsa.301810.2.CDS.7	CDS
Cucsa.301810.2.CDS.8	Cucsa.301810.2.CDS.8	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301810.2.three_prime_UTR.1	Cucsa.301810.2.three_prime_UTR.1	three_prime_UTR
Cucsa.301810.2.three_prime_UTR.2	Cucsa.301810.2.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 115..180 score: 1.6E-16coord: 22..90 score: 1.5E-14coord: 232..295 score: 4.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 231..298 score: 1.3E-22coord: 21..96 score: 2.8E-14coord: 114..188 score: 3.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 20..100 score: 15.409coord: 113..192 score: 17.455coord: 230..302 score: 17
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 106..195 score: 1.5E-22coord: 222..316 score: 1.5E-23coord: 7..99 score: 6.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 112..304 score: 1.37E-44coord: 8..88 score: 8.69
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 90..361 score: 5.1E
None	No IPR available	PANTHER	PTHR24012:SF333	POLYADENYLATE-BINDING PROTEIN RBP45B-RELATED	coord: 90..361 score: 5.1E