Cucsa.301700.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.301700.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosomal protein L15
Location	scaffold02951 : 9483 .. 11617 (+)
Sequence length	839

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCTTGAACTTCTCTTTCCAATGGGTATGATACCGATCTCTTCTTCTTCCTTCTTCCGTTTAATTTTTCAGCGAGTAGGGAGTTTTTACACCCAAATTTTTAAAGACACTATCATGCGGTTTGTTCGTTCTTGTCATCTTCATAATCTTCCAATTTTGTTTGTTTATGGAGAAGCTTAGATTAGATTTTCTAATGTTCTTCTTTGATGAAATCGAAATATTTTCTTTTATCATTCTGATTTTTTAGCTTTCCTTTGGCATCTGGAAAAAATGGGGTAAAATTTAACGCATTGAATGGTTCTAGTATTTTGAACTGTTTTTATTTATTTATATTACTTGTATTTTAATACTCTCTCAAGTTAGATTGATTACATAATAGCTTGAATTAGATTATTATTTGTTGCTGTTTGATAACTTTGGAAATTTTCTTTtATTTTTCTGATTGTTTATGTTCTTGCTTGATATAATCGATTAAAGTTGTCAAGGATGTTTTTTTTttAGTGTTTTAAGATCTACTTCTGTTTTCTTAAGTAGGCTTAGGCTACTTGGTCATTTTTGTTTtCTTTTtCTTTTAGTTTAAATTTAGTTCTTATAGTGCAAAAATTTACAATTTAGTCCTGGAAAAGTTCACATGATTCCCTAGCTACTTTAATTTTTTTTTtAAATTGAGTGTATTCTTTGGTGTTGTGAATTTTTTAGCCCATCGAACCATTTTTGTTTTTTCATATCATTGCATTGAATTTATAAGGAGATTTTTGTTGAAATTTTTAAATCAATGTGTTTGCTTACCTTTTACTATTTTTAAAATCTTTCAGTTTAGATTGTTTATAGTGGAGCCTAGGTTAGATTGTTGCATGTTTATGGTTCGTGAAATGGAAAAAAAAAaCCCCTAATGTTCTCTATTCGCTTAGTTGACAATATTTGTAACTTGAAAAAATAGGGGCTTACAAGTATGTGTCGGAGCTATGGAGGAAGAAGCAGTCCGATGTTATGAGGTTTCTTCAGAGGGTAAGATGCTGGGAATATCGCCAACATCCTTCAATTGTCCGCGTCAATCATCCCACTCGCCCTGATAAAGCTCGGCGTCTGGGTTACAAGGCCAAGCAGGTAAGATAGTATGTAAGCATTTTCTTATAGAGTTATTTGCATCTAAGCTTACATGAGTTTTTTCCCTAGATGTTTTGGTTATCATGTCATTGGATTTTTTGGTATCCTTGTTTtATTTTCTTCCAAATGTTCTCATTTTATTCTGTATTTTACTGTTTGGAAGTTTTAGAGTAAATGTTGCATCTTTTTTTtGTCTAACTTGGATGGTATGATGGTTTTTtATGATGTTTGGAAGTTATAGAGTATGATATGATGGTTTTTGGGTTATGTACTTTGCTGCAGGGTTATGTCGTTTATAGGGTTCGTGTGAGACGTGGTGGTAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGAAAACCAACTAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGGTCAGTTGCTGAAGAACGAGCAGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTCGTACTGGATCAATGAGGTAATTGATTTTACACCCTTATTTCATTAGGTAACTTTAGGCCAGGAGCAATGATTGATACAAAATATTGATTACTCTCTTATTGACAAATTGAAATAGGATTCTACGTACAAATACTATGAAGTGATTTTGGTTGATGTTGCCCATAATGCCGTTCGCAATGACCCGAGAATCAACTGGATCTGCAACCCTGTCCACAAGCGCAGGGAGCTCAGAGGACTTACATCCGCAGGCAAGAAGTACAGGGGTCTTCGTGGAAAAGGACACTTGCACCACAAGGCCAGGCCTTCTCGCAGAGCAACCTGGAAGAGGAACAATACTCTATCCCTCCGTCGTTATCGTTGATTTTGGTATTTTTTTtCTCTGTTTTGTTATTTTTATTTCGAGCATTCTGTTTGGGGAATGTTGTGGCTTAAAGTTACTTCGATCTAGAAATTTTTGAACTATATAATTTGTGTCGAGGATTGTGAGGATCTTTCTAAACTAAGTGATCATTTTTGTTCTTATTATTGCAGCTCCCCTTTTTCTCTTTTTCCTTTTCAAAAGAA

mRNA sequence

AACCTTGAACTTCTCTTTCCAATGGGGGCTTACAAGTATGTGTCGGAGCTATGGAGGAAGAAGCAGTCCGATGTTATGAGGTTTCTTCAGAGGGTAAGATGCTGGGAATATCGCCAACATCCTTCAATTGTCCGCGTCAATCATCCCACTCGCCCTGATAAAGCTCGGCGTCTGGGTTACAAGGCCAAGCAGGGTTATGTCGTTTATAGGGTTCGTGTGAGACGTGGTGGTAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGAAAACCAACTAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGGTCAGTTGCTGAAGAACGAGCAGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTCGTACTGGATCAATGAGGATTCTACGTACAAATACTATGAAGTGATTTTGGTTGATGTTGCCCATAATGCCGTTCGCAATGACCCGAGAATCAACTGGATCTGCAACCCTGTCCACAAGCGCAGGGAGCTCAGAGGACTTACATCCGCAGGCAAGAAGTACAGGGGTCTTCGTGGAAAAGGACACTTGCACCACAAGGCCAGGCCTTCTCGCAGAGCAACCTGGAAGAGGAACAATACTCTATCCCTCCGTCGTTATCGTTGATTTTGGTATTTTTTTTCTCTGTTTTGTTATTTTTATTTCGAGCATTCTGTTTGGGGAATGTTGTGGCTTAAAGTTACTTCGATCTAGAAATTTTTGAACTATATAATTTGTGTCGAGGATTGTGAGGATCTTTCTAAACTAAGTGATCATTTTTGTTCTTATTATTGCAGCTCCCCTTTTTCTCTTTTTCCTTTTCAAAAGAA

Coding sequence (CDS)

ATGGGGGCTTACAAGTATGTGTCGGAGCTATGGAGGAAGAAGCAGTCCGATGTTATGAGGTTTCTTCAGAGGGTAAGATGCTGGGAATATCGCCAACATCCTTCAATTGTCCGCGTCAATCATCCCACTCGCCCTGATAAAGCTCGGCGTCTGGGTTACAAGGCCAAGCAGGGTTATGTCGTTTATAGGGTTCGTGTGAGACGTGGTGGTAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGAAAACCAACTAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGGTCAGTTGCTGAAGAACGAGCAGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTCGTACTGGATCAATGAGGATTCTACGTACAAATACTATGAAGTGATTTTGGTTGATGTTGCCCATAATGCCGTTCGCAATGACCCGAGAATCAACTGGATCTGCAACCCTGTCCACAAGCGCAGGGAGCTCAGAGGACTTACATCCGCAGGCAAGAAGTACAGGGGTCTTCGTGGAAAAGGACACTTGCACCACAAGGCCAGGCCTTCTCGCAGAGCAACCTGGAAGAGGAACAATACTCTATCCCTCCGTCGTTATCGTTGA

Protein sequence

MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR*

Homology

[Close]

BLAST of Cucsa.301700.1 vs. Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 2.8e-108
Identity = 183/204 (89.71%), Postives = 193/204 (94.61%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+ HPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           IN+DSTYKYYEV+LVD AH  +RNDPRINWICN VHK RELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           +HKARPS+RATWKRNNTLSLRRYR
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 2.8e-108
Identity = 187/204 (91.67%), Postives = 195/204 (95.59%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+  PTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYYE+ILVD AHNAVRNDPRINWICNPVHK RELRGLTS GKK RGLRGKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           +HK RPSRRATWK+NN+LSLRRYR
Sbjct: 181 NHKNRPSRRATWKKNNSLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 4.8e-108
Identity = 186/204 (91.18%), Postives = 195/204 (95.59%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+  PTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYYE+ILVD AHNAVRNDPRINWICNPVHK RELRGLTS GKK RGLRGKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           +HK RPSRRATWK+NN++SLRRYR
Sbjct: 181 NHKNRPSRRATWKKNNSISLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.4e-107
Identity = 187/204 (91.67%), Postives = 193/204 (94.61%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAY YVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRV  PTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKY+EVILVD AH A+RNDPRINWICNPVHK RELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           H+KA PSRRA WKRN TLSL RYR
Sbjct: 181 HNKAPPSRRANWKRNQTLSLPRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.0e-106
Identity = 181/204 (88.73%), Postives = 193/204 (94.61%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKY+ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRV  P+RPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           IN+DSTYKYYE+ILVD AH+A+R DPRINWICN VHK RELRGLTSAGKKYRGLRG+GHL
Sbjct: 121 INQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           +HKARPS+RATWKRNNTLSLRRYR
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. TrEMBL
Match: A0A0A0KKP5_CUCSA (Ribosomal protein L15 OS=Cucumis sativus GN=Csa_5G162630 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 1.2e-116
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. TrEMBL
Match: A0A0A0KU38_CUCSA (Ribosomal protein L15 OS=Cucumis sativus GN=Csa_3G112770 PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 9.8e-116
Identity = 202/204 (99.02%), Postives = 203/204 (99.51%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHK RELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. TrEMBL
Match: A0A0D2PUM3_GOSRA (Ribosomal protein L15 OS=Gossypium raimondii GN=B456_001G049600 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 1.8e-114
Identity = 199/204 (97.55%), Postives = 202/204 (99.02%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKY+EVILVD AHNA+RNDPRINWICNPVHK RELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. TrEMBL
Match: A0A0B0PCZ3_GOSAR (Ribosomal protein L15 OS=Gossypium arboreum GN=F383_08565 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 1.8e-114
Identity = 199/204 (97.55%), Postives = 202/204 (99.02%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKY+EVILVD AHNA+RNDPRINWICNPVHK RELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYFEVILVDPAHNAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. TrEMBL
Match: A0A0B0MN21_GOSAR (Ribosomal protein L15 OS=Gossypium arboreum GN=F383_00145 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 4.1e-114
Identity = 198/204 (97.06%), Postives = 201/204 (98.53%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKY+EVILVD AHNA+RNDPRINWICNPVHK RELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYFEVILVDTAHNAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRA WKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRANWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. TAIR10
Match: AT4G16720.1 (AT4G16720.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 392.5 bits (1007), Expect = 1.6e-109
Identity = 187/204 (91.67%), Postives = 195/204 (95.59%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+  PTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYYE+ILVD AHNAVRNDPRINWICNPVHK RELRGLTS GKK RGLRGKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           +HK RPSRRATWK+NN+LSLRRYR
Sbjct: 181 NHKNRPSRRATWKKNNSLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. TAIR10
Match: AT4G17390.1 (AT4G17390.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 391.7 bits (1005), Expect = 2.7e-109
Identity = 186/204 (91.18%), Postives = 195/204 (95.59%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+  PTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           +NEDSTYKYYE+ILVD AHNAVRNDPRINWICNPVHK RELRGLTS GKK RGLRGKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           +HK RPSRRATWK+NN++SLRRYR
Sbjct: 181 NHKNRPSRRATWKKNNSISLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. NCBI nr
Match: gi|700195088|gb|KGN50265.1| (hypothetical protein Csa_5G162630 [Cucumis sativus])

HSP 1 Score: 427.2 bits (1097), Expect = 1.7e-116
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. NCBI nr
Match: gi|778700136|ref|XP_011654821.1| (PREDICTED: 60S ribosomal protein L15-2 [Cucumis sativus])

HSP 1 Score: 427.2 bits (1097), Expect = 1.7e-116
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 23  MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 82

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW
Sbjct: 83  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 142

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL
Sbjct: 143 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 202

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 203 HHKARPSRRATWKRNNTLSLRRYR 226

[Close]

BLAST of Cucsa.301700.1 vs. NCBI nr
Match: gi|449458361|ref|XP_004146916.1| (PREDICTED: 60S ribosomal protein L15-1 [Cucumis sativus])

HSP 1 Score: 424.1 bits (1089), Expect = 1.4e-115
Identity = 202/204 (99.02%), Postives = 203/204 (99.51%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHK RELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. NCBI nr
Match: gi|659073434|ref|XP_008437057.1| (PREDICTED: 60S ribosomal protein L15-2 isoform X2 [Cucumis melo])

HSP 1 Score: 422.5 bits (1085), Expect = 4.1e-115
Identity = 201/204 (98.53%), Postives = 202/204 (99.02%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYYEVILVDVAHNA+RNDPRI WICNPVHK RELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYYEVILVDVAHNAIRNDPRIKWICNPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Cucsa.301700.1 vs. NCBI nr
Match: gi|659102593|ref|XP_008452210.1| (PREDICTED: 60S ribosomal protein L15-2-like [Cucumis melo])

HSP 1 Score: 420.2 bits (1079), Expect = 2.0e-114
Identity = 200/204 (98.04%), Postives = 201/204 (98.53%), Query Frame = 1


Query: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60
           MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEDSTYKYYEVILVDVAHNAVRNDPRINWICNPVHKRRELRGLTSAGKKYRGLRGKGHL 180
           INEDSTYKYYEVILVDVAHNA+RNDPRI WIC PVHK RELRGLTSAGKKYRGLRGKGHL
Sbjct: 121 INEDSTYKYYEVILVDVAHNAIRNDPRIKWICKPVHKHRELRGLTSAGKKYRGLRGKGHL 180

Query: 181 HHKARPSRRATWKRNNTLSLRRYR 205
           HHKARPSRRATWKRNNTLSLRRYR
Sbjct: 181 HHKARPSRRATWKRNNTLSLRRYR 204

The following BLAST results are available for this feature:

BLAST of Cucsa.301700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL15B_PICMA	2.8e-108	89.71	60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1	[more]
RL151_ARATH	2.8e-108	91.67	60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1	[more]
RL152_ARATH	4.8e-108	91.18	60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1	[more]
RL15_PETHY	1.4e-107	91.67	60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1	[more]
RL15A_PICMA	2.0e-106	88.73	60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1	[more]

BLAST of Cucsa.301700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKP5_CUCSA	1.2e-116	100.00	Ribosomal protein L15 OS=Cucumis sativus GN=Csa_5G162630 PE=3 SV=1	[more]
A0A0A0KU38_CUCSA	9.8e-116	99.02	Ribosomal protein L15 OS=Cucumis sativus GN=Csa_3G112770 PE=3 SV=1	[more]
A0A0D2PUM3_GOSRA	1.8e-114	97.55	Ribosomal protein L15 OS=Gossypium raimondii GN=B456_001G049600 PE=3 SV=1	[more]
A0A0B0PCZ3_GOSAR	1.8e-114	97.55	Ribosomal protein L15 OS=Gossypium arboreum GN=F383_08565 PE=3 SV=1	[more]
A0A0B0MN21_GOSAR	4.1e-114	97.06	Ribosomal protein L15 OS=Gossypium arboreum GN=F383_00145 PE=3 SV=1	[more]

BLAST of Cucsa.301700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16720.1	1.6e-109	91.67	Ribosomal protein L23/L15e family protein	[more]
AT4G17390.1	2.7e-109	91.18	Ribosomal protein L23/L15e family protein	[more]

BLAST of Cucsa.301700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195088\|gb\|KGN50265.1\|	1.7e-116	100.00	hypothetical protein Csa_5G162630 [Cucumis sativus]	[more]
gi\|778700136\|ref\|XP_011654821.1\|	1.7e-116	100.00	PREDICTED: 60S ribosomal protein L15-2 [Cucumis sativus]	[more]
gi\|449458361\|ref\|XP_004146916.1\|	1.4e-115	99.02	PREDICTED: 60S ribosomal protein L15-1 [Cucumis sativus]	[more]
gi\|659073434\|ref\|XP_008437057.1\|	4.1e-115	98.53	PREDICTED: 60S ribosomal protein L15-2 isoform X2 [Cucumis melo]	[more]
gi\|659102593\|ref\|XP_008452210.1\|	2.0e-114	98.04	PREDICTED: 60S ribosomal protein L15-2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000439	Ribosomal_L15e
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR020925	Ribosomal_L15e_CS
IPR024794	Rbsml_L15e_core_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.301700	Cucsa.301700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.301700.1	Cucsa.301700.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301700.1.five_prime_UTR.1	Cucsa.301700.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301700.1.CDS.1	Cucsa.301700.1.CDS.1	CDS
Cucsa.301700.1.CDS.2	Cucsa.301700.1.CDS.2	CDS
Cucsa.301700.1.CDS.3	Cucsa.301700.1.CDS.3	CDS
Cucsa.301700.1.CDS.4	Cucsa.301700.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.301700.1.three_prime_UTR.1	Cucsa.301700.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000439	Ribosomal protein L15e	PANTHER	PTHR11847	RIBOSOMAL PROTEIN L15	coord: 2..204 score: 5.9E
IPR000439	Ribosomal protein L15e	PFAM	PF00827	Ribosomal_L15e	coord: 2..190 score: 3.4
IPR000439	Ribosomal protein L15e	SMART	SM01384	Ribosomal_L15e_2	coord: 2..193 score: 3.0E
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 1..195 score: 1.92
IPR020925	Ribosomal protein L15e, conserved site	PROSITE	PS01194	RIBOSOMAL_L15E	coord: 46..69 scor
IPR024794	Ribosomal protein L15e core domain	GENE3D	G3DSA:3.40.1120.10		coord: 1..195 score: 1.8E