Cucsa.288720.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATCTTTATTTCCTTCAAAGCTTTATCAGAAATCACTAAAAAAGACCATTCCTTTTTCTCTTCCATTCTCCATATATAGTTTCACTTACCCATTTTCTTCTATACCCATCTTTTCTTCTTCTGAATTGATTTTATTCAATGGAAAAATTACAACAAAATGAAGCTCAACATCGTGGCTATGTCATGGAAGATAATTATGAGTCTTCTTCTTCTTCTTCAACGGACGAGCTTAGTCGTTCTATAAATTCAGAGGAATGTTCTTCATTAGAAATGGTGGAGGATGTAAGTTCTTCTTTGTCGTCGTCTTCTTCAAATGGGCCTCTCTTTGAATTAACAGAGCTAATGGTTCATCTTCCTATTAAGTAAGTTCATGGGATTGTAAATTTACtCTTTTTtCTtTTTTATTGTTGTTTTTTATACATTGGAATAATTTATATCTTCTTTTGCTTTTTTCTTTTtTTTTTTTtGTAGGAGAGGATTGTCTAAATATTATGATGGTAAATCTGAATCTTTTACATCTTTAGCAAGTGTTGAAAGATTAGAAGATTTGGCCAAAAGGGTATCTCCAGTTACAAAAAGATTCAAATCTTGTAAGAGTTTTGATGGTCATAAATCCATTGTTCCCAGAGCTGCCATAGCCAAGAAAAGTTCAAGATCAAGACGAAAAAGTAGTTTGATCTGTGGTTCTAGGGCTACAATTTCTGTGAATGGACACTGATTAGAGGTTTAATTTCAACGGAATAAAAGATCGAACAACATGACTAACACGACTCTATTGCTAATCTTAATTAATCTTGTAAATTTTTAAGCATATCTTTTCTCTCTTTTCTTTTTtATTTTTCCAAGGAATTTTGTCACATAGTGTAAAGTTTTAACCTCTCATTGTACATTGGTTTTTtAAATTTGTAACATTTTGTTGTTGATTATTTATTACAATATTTACGTGCA AAATCTTTATTTCCTTCAAAGCTTTATCAGAAATCACTAAAAAAGACCATTCCTTTTTCTCTTCCATTCTCCATATATAGTTTCACTTACCCATTTTCTTCTATACCCATCTTTTCTTCTTCTGAATTGATTTTATTCAATGGAAAAATTACAACAAAATGAAGCTCAACATCGTGGCTATGTCATGGAAGATAATTATGAGTCTTCTTCTTCTTCTTCAACGGACGAGCTTAGTCGTTCTATAAATTCAGAGGAATGTTCTTCATTAGAAATGGTGGAGGATGTAAGTTCTTCTTTGTCGTCGTCTTCTTCAAATGGGCCTCTCTTTGAATTAACAGAGCTAATGGTTCATCTTCCTATTAAGAGAGGATTGTCTAAATATTATGATGGTAAATCTGAATCTTTTACATCTTTAGCAAGTGTTGAAAGATTAGAAGATTTGGCCAAAAGGGTATCTCCAGTTACAAAAAGATTCAAATCTTGTAAGAGTTTTGATGGTCATAAATCCATTGTTCCCAGAGCTGCCATAGCCAAGAAAAGTTCAAGATCAAGACGAAAAAGTAGTTTGATCTGTGGTTCTAGGGCTACAATTTCTGTGAATGGACACTGATTAGAGGTTTAATTTCAACGGAATAAAAGATCGAACAACATGACTAACACGACTCTATTGCTAATCTTAATTAATCTTGTAAATTTTTAAGCATATCTTTTCTCTCTTTTCTTTTTTATTTTTCCAAGGAATTTTGTCACATAGTGTAAAGTTTTAACCTCTCATTGTACATTGGTTTTTTAAATTTGTAACATTTTGTTGTTGATTATTTATTACAATATTTACGTGCA ATGGAAAAATTACAACAAAATGAAGCTCAACATCGTGGCTATGTCATGGAAGATAATTATGAGTCTTCTTCTTCTTCTTCAACGGACGAGCTTAGTCGTTCTATAAATTCAGAGGAATGTTCTTCATTAGAAATGGTGGAGGATGTAAGTTCTTCTTTGTCGTCGTCTTCTTCAAATGGGCCTCTCTTTGAATTAACAGAGCTAATGGTTCATCTTCCTATTAAGAGAGGATTGTCTAAATATTATGATGGTAAATCTGAATCTTTTACATCTTTAGCAAGTGTTGAAAGATTAGAAGATTTGGCCAAAAGGGTATCTCCAGTTACAAAAAGATTCAAATCTTGTAAGAGTTTTGATGGTCATAAATCCATTGTTCCCAGAGCTGCCATAGCCAAGAAAAGTTCAAGATCAAGACGAAAAAGTAGTTTGATCTGTGGTTCTAGGGCTACAATTTCTGTGAATGGACACTGA MEKLQQNEAQHRGYVMEDNYESSSSSSTDELSRSINSEECSSLEMVEDVSSSLSSSSSNGPLFELTELMVHLPIKRGLSKYYDGKSESFTSLASVERLEDLAKRVSPVTKRFKSCKSFDGHKSIVPRAAIAKKSSRSRRKSSLICGSRATISVNGH*
BLAST of Cucsa.288720.1 vs. TrEMBL
Match: A0A0A0LWB5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575060 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 4.3e-79 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. TrEMBL
Match: A0A0J8BT98_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g197670 PE=4 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 6.5e-27 Identity = 72/130 (55.38%), Postives = 87/130 (66.92%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. TrEMBL
Match: V4RYI7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026542mg PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26 Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. TrEMBL
Match: A0A067E9T2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029278mg PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26 Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. TrEMBL
Match: D7TBF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g02980 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26 Identity = 74/139 (53.24%), Postives = 94/139 (67.63%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. TAIR10
Match: AT5G56550.1 (AT5G56550.1 oxidative stress 3) HSP 1 Score: 89.7 bits (221), Expect = 1.7e-18 Identity = 63/145 (43.45%), Postives = 87/145 (60.00%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. TAIR10
Match: AT4G26288.1 (AT4G26288.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 84.7 bits (208), Expect = 5.4e-17 Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. TAIR10
Match: AT5G21940.1 (AT5G21940.1 unknown protein) HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12 Identity = 45/136 (33.09%), Postives = 72/136 (52.94%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. TAIR10
Match: AT3G43850.1 (AT3G43850.1 unknown protein) HSP 1 Score: 55.5 bits (132), Expect = 3.5e-08 Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. TAIR10
Match: AT3G03170.1 (AT3G03170.1 unknown protein) HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07 Identity = 42/113 (37.17%), Postives = 53/113 (46.90%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. NCBI nr
Match: gi|449436054|ref|XP_004135809.1| (PREDICTED: uncharacterized protein LOC101216138 [Cucumis sativus]) HSP 1 Score: 302.0 bits (772), Expect = 6.1e-79 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. NCBI nr
Match: gi|659099823|ref|XP_008450794.1| (PREDICTED: uncharacterized protein LOC103492272 [Cucumis melo]) HSP 1 Score: 263.1 bits (671), Expect = 3.2e-67 Identity = 142/156 (91.03%), Postives = 147/156 (94.23%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. NCBI nr
Match: gi|694322939|ref|XP_009352565.1| (PREDICTED: uncharacterized protein LOC103943918 [Pyrus x bretschneideri]) HSP 1 Score: 137.9 bits (346), Expect = 1.5e-29 Identity = 75/133 (56.39%), Postives = 100/133 (75.19%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. NCBI nr
Match: gi|658004954|ref|XP_008337613.1| (PREDICTED: uncharacterized protein LOC103400734 [Malus domestica]) HSP 1 Score: 137.5 bits (345), Expect = 2.0e-29 Identity = 76/133 (57.14%), Postives = 99/133 (74.44%), Query Frame = 1
BLAST of Cucsa.288720.1 vs. NCBI nr
Match: gi|1009162546|ref|XP_015899497.1| (PREDICTED: uncharacterized protein LOC107432813 [Ziziphus jujuba]) HSP 1 Score: 128.6 bits (322), Expect = 9.3e-27 Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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