Cucsa.288590.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.288590.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Myb transcription factor
Location	scaffold02698 : 172087 .. 173120 (+)
Sequence length	723

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAGTGTTAAGAGAGGGCCATGGTCACCTCAAGAAGACGCCACACTCACTGCCTTTATTCATAAACATGGCACCGGTGGCAATTGGATCGCTCTCCCTCATAAAGCAGGTTCGTTTTGTAACCATTTTGGTGTGTTTTAAGCTTTTGGGTTCATTGATGATGTACGAGTTTTCTTCTCTAGGGCTTAATCGATGCGGGAAAAGCTGCCGGCTAAGGTGGCTGAATTATCTCAGACCAGATATTAAACATGGAGGTTTCACTCAAGAGGAAGATAATGTTATTTGTTCTCTCTATTCCACCATTGGAAGTAGGCAAGTTTTCTTCTCCGTTTACAGATAAAATTGTATATGTATTTTTCATTATTTCTTTGTAATTATTTTATAAACCAACTTGATGGAAAATTACTTGTTTGAAAATTTGATTTTGATAATGAAAGGAAATGGTAAGAAGTAGAGATGTAACGAAGGAAAGAAACTAATGGATGAAAAAAGATGTTGGTACGTTTTGAGATATATGTGATATGAAACGTAGTGATTTGTTTTGATTTAGGTGGGCGGTAATTGCATCACAATTACCTGGAAGAACGGACAACGACGTGAAAAACCACTGGAATACAAAGTTAAAGAAGAAGTTCAATAGTTCATTTTCTAAACCACCAAATCCCATCGTGGTTGTCACTGACCCGCCGCGATATTCCTCGACAAGTACTGCAAATTCCTTAAAACTCCATGATGATCATGAACACAACATCAACACCAACTTCAACATGTTTTCAAGCCATCCTCCTTTTGATCAAATTCCGATGTTGAACAATAACAATAATCCAATAATACCAGAACTATCCACTTCCTCATCTTCAATTTCACTACCCATCGAGCAAAACCACCTCGAATTTTCCGGTCCGCGCTCCGACGAGGCAGCAGATATCCTACAAAGTTATTTCCATGGGGTTTATGAGAACAATAATCAATACCCATATGAAGATGATGTTATGGATGGATTTGAT

mRNA sequence

ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAGTGTTAAGAGAGGGCCATGGTCACCTCAAGAAGACGCCACACTCACTGCCTTTATTCATAAACATGGCACCGGTGGCAATTGGATCGCTCTCCCTCATAAAGCAGGGCTTAATCGATGCGGGAAAAGCTGCCGGCTAAGGTGGCTGAATTATCTCAGACCAGATATTAAACATGGAGGTTTCACTCAAGAGGAAGATAATGTTATTTGTTCTCTCTATTCCACCATTGGAAGTAGGTGGGCGGTAATTGCATCACAATTACCTGGAAGAACGGACAACGACGTGAAAAACCACTGGAATACAAAGTTAAAGAAGAAGTTCAATAGTTCATTTTCTAAACCACCAAATCCCATCGTGGTTGTCACTGACCCGCCGCGATATTCCTCGACAAGTACTGCAAATTCCTTAAAACTCCATGATGATCATGAACACAACATCAACACCAACTTCAACATGTTTTCAAGCCATCCTCCTTTTGATCAAATTCCGATGTTGAACAATAACAATAATCCAATAATACCAGAACTATCCACTTCCTCATCTTCAATTTCACTACCCATCGAGCAAAACCACCTCGAATTTTCCGGTCCGCGCTCCGACGAGGCAGCAGATATCCTACAAAGTTATTTCCATGGGGTTTATGAGAACAATAATCAATACCCATATGAAGATGATGTTATGGATGGATTTGAT

Coding sequence (CDS)

ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAGTGTTAAGAGAGGGCCATGGTCACCTCAAGAAGACGCCACACTCACTGCCTTTATTCATAAACATGGCACCGGTGGCAATTGGATCGCTCTCCCTCATAAAGCAGGGCTTAATCGATGCGGGAAAAGCTGCCGGCTAAGGTGGCTGAATTATCTCAGACCAGATATTAAACATGGAGGTTTCACTCAAGAGGAAGATAATGTTATTTGTTCTCTCTATTCCACCATTGGAAGTAGGTGGGCGGTAATTGCATCACAATTACCTGGAAGAACGGACAACGACGTGAAAAACCACTGGAATACAAAGTTAAAGAAGAAGTTCAATAGTTCATTTTCTAAACCACCAAATCCCATCGTGGTTGTCACTGACCCGCCGCGATATTCCTCGACAAGTACTGCAAATTCCTTAAAACTCCATGATGATCATGAACACAACATCAACACCAACTTCAACATGTTTTCAAGCCATCCTCCTTTTGATCAAATTCCGATGTTGAACAATAACAATAATCCAATAATACCAGAACTATCCACTTCCTCATCTTCAATTTCACTACCCATCGAGCAAAACCACCTCGAATTTTCCGGTCCGCGCTCCGACGAGGCAGCAGATATCCTACAAAGTTATTTCCATGGGGTTTATGAGAACAATAATCAATACCCATATGAAGATGATGTTATGGATGGATTTGAT

Protein sequence

MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLNYLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSSFSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNNPIIPELSTSSSSISLPIEQNHLEFSGPRSDEAADILQSYFHGVYENNNQYPYEDDVMDGFD

Homology

[Close]

BLAST of Cucsa.288590.1 vs. Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.9e-56
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDA L  +I K GTGGNWIALPHKAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+I+HG FT+EEDN+I SL+++IGSRW+VIA+ L GRTDND+KN+WNTKLKKK  ++
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIAT 120

Query: 121 FSKPP-NPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTN 160
            + PP + + + T     S +S+++   ++    +N +TN
Sbjct: 121 MAPPPHHHLAIATSSSSASPSSSSHYNMINSLLPYNPSTN 160

[Close]

BLAST of Cucsa.288590.1 vs. Swiss-Prot
Match: MYB36_ARATH (Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.6e-55
Identity = 111/216 (51.39%), Postives = 142/216 (65.74%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+ED  L  +I K+GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHGGF++EED +I SLY +IGSRW++IA+QLPGRTDND+KN+WNTKLKKK    
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 FSKPPNPIVVVTD-------------PPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHP 180
             K  N    +TD              P+  S S    L+LH   + N+ + F+ F ++P
Sbjct: 121 -QKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQ-NLQSPFSSFYNNP 180

Query: 181 PF--DQIPMLNNNNNPIIPELSTSSSSISLPIEQNH 202
                  P+L +      P+L++  S   L +  +H
Sbjct: 181 ILWPKLHPLLQSTTTNQNPKLASQESFHPLGVNVDH 214

[Close]

BLAST of Cucsa.288590.1 vs. Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-54
Identity = 91/116 (78.45%), Postives = 107/116 (92.24%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+EDA L ++I   GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKK 117
           YLRP+IKHGGF++EE+N+ICSLY TIGSRW++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

[Close]

BLAST of Cucsa.288590.1 vs. Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.7e-51
Identity = 106/207 (51.21%), Postives = 136/207 (65.70%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDK  VKRGPWSP+ED+ L  +I K+G GGNWI+ P KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHG F++EED +I SL++ IGSRW++IA+ LPGRTDND+KN+WNTKL+KK  SS
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSS 120

Query: 121 FSKPP---------NPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFD- 180
            S            NPI      P   +T  ++S   + ++ +   T  ++ SS   F+ 
Sbjct: 121 SSDSSSSAMASPYLNPISQDVKRPTSPTTIPSSSYNPYAENPNQYPTK-SLISSINGFEA 180

Query: 181 ---QIPMLNNNNNPIIPELSTSSSSIS 195
              QI    N N P    LS S+++ S
Sbjct: 181 GDKQIISYINPNYPQDLYLSDSNNNTS 206

[Close]

BLAST of Cucsa.288590.1 vs. Swiss-Prot
Match: MYB80_ARATH (Transcription factor MYB80 OS=Arabidopsis thaliana GN=MYB80 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.5e-44
Identity = 88/182 (48.35%), Postives = 117/182 (64.29%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGR PCC+K +VKRG W+P+ED  L ++I +HGT  NW  +P  AGL RCGKSCRLRW N
Sbjct: 1   MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTR-NWRLIPKNAGLQRCGKSCRLRWTN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKF--- 120
           YLRPD+KHG F++ E+++I   +S +G+RW++IA+QLPGRTDNDVKN+WNTKLKKK    
Sbjct: 61  YLRPDLKHGQFSEAEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNYWNTKLKKKLSGM 120

Query: 121 ------NSSFSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEH-----NINTNFNMFSSH 169
                 +  FS     I    +PP+ S  + A      D+  H      ++ N   FS+H
Sbjct: 121 GIDPVTHKPFSHLMAEITTTLNPPQVSHLAEAALGCFKDEMLHLLTKKRVDLNQINFSNH 180

[Close]

BLAST of Cucsa.288590.1 vs. TrEMBL
Match: A0A0A0LZB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575180 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 2.5e-142
Identity = 239/241 (99.17%), Postives = 240/241 (99.59%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180
           FSKPPNPIVVVTDPPRYS+TSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN
Sbjct: 121 FSKPPNPIVVVTDPPRYSATSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180

Query: 181 PIIPELSTSSSSISLPIEQNHLEFSGPRSDEAADILQSYFHGVYENNNQYPYEDDVMDGF 240
           PIIPELSTSSSSISLPIEQNHLEFSGP SDEAADILQSYFHGVYENNNQYPYEDDVMDGF
Sbjct: 181 PIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVYENNNQYPYEDDVMDGF 240

Query: 241 D 242
           D
Sbjct: 241 D 241

[Close]

BLAST of Cucsa.288590.1 vs. TrEMBL
Match: K7MNI7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G231900 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 120/232 (51.72%), Postives = 155/232 (66.81%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL  ++  HGTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKNYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFT+EEDN+IC+LY+ +GSRW+ IAS+LPGRTDNDVKN+WNTKLKKK  + 
Sbjct: 61  YLRPDIKHGGFTEEEDNIICTLYAQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAR 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180
                  +  +T      STST +SL  + + + + N+ F   + + P   +P+L+ NN 
Sbjct: 121 ----KVTLKTLTHNDTLPSTSTPSSLTNNQNVKTSQNSPFPSQNQNSPPSVLPVLDANNA 180

Query: 181 PIIPELSTSSSSISLPIEQNHLEFSGPR-SDEAADILQSYFHGVYENNNQYP 232
             I    T++    +  +Q H     P+  D+    + +    +  NNN  P
Sbjct: 181 LFI----TNNEKSIISFDQTHHGLYSPQVMDDVVSQIGASSRIINNNNNNNP 224

[Close]

BLAST of Cucsa.288590.1 vs. TrEMBL
Match: M0TBM8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.0e-59
Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL A+I KHGTGGNWIALPHK GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPEEDATLKAYIEKHGTGGNWIALPHKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHGGF+ EED++ICSLYS+IGSRW++IA+QLPGRTDND+KNHWNT+LKKK    
Sbjct: 61  YLRPNIKHGGFSVEEDHIICSLYSSIGSRWSIIAAQLPGRTDNDIKNHWNTRLKKKLLGK 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINT----NFNMFSSHPPFDQIPMLN 180
             +PP P  +  +     ST  AN++ L   H   ++        +     PF     L 
Sbjct: 121 PREPPQPRCLSVN---QVSTEVANAMSL-QTHPQTLSAPALERMQLRGCEDPFFYHHPLG 180

Query: 181 NNNNPIIPELSTSSSSISLPIEQNH 202
           +    +  +  T +S+ + PI+ +H
Sbjct: 181 DK---LFEDQHTDTSTSTTPIDSSH 198

[Close]

BLAST of Cucsa.288590.1 vs. TrEMBL
Match: A0A0D2LTS6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024300 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 8.4e-58
Identity = 125/231 (54.11%), Postives = 151/231 (65.37%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL  ++  HGTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKNYVQSHGTGGNWIALPLKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKF--- 120
           YLRPDIKHGGFT+EEDN+ICSLYS +GSRW++IASQLPGRTDNDVKN+WNTKLKKK    
Sbjct: 61  YLRPDIKHGGFTEEEDNIICSLYSQMGSRWSLIASQLPGRTDNDVKNYWNTKLKKKLLAG 120

Query: 121 NSSFSKPPNPIV-------VVTDPPRYSSTSTANSLKLHDDHEH-----NINTNFNM--- 180
            SSF+   N  +       + T P  Y+   +  SL +  D  +     N +T+ NM   
Sbjct: 121 KSSFNVENNGGLLNANNNNIPTQPLPYNLDYSTTSLPILSDVSYGFSVSNCSTSQNMGLD 180

Query: 181 ----FSSHPPFDQI----PMLNNNNNPIIPELSTSSSSISLPIEQNHLEFS 206
               FS+      +    P L+N++N I+   S+   S          EFS
Sbjct: 181 PVMQFSTPDTITNLSQSGPNLDNSHNNIVVVSSSQEGSALSDSTGPSFEFS 231

[Close]

BLAST of Cucsa.288590.1 vs. TrEMBL
Match: A0A0D2N4Q1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024300 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 122/218 (55.96%), Postives = 148/218 (67.89%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL  ++  HGTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKNYVQSHGTGGNWIALPLKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKF--- 120
           YLRPDIKHGGFT+EEDN+ICSLYS +GSRW++IASQLPGRTDNDVKN+WNTKLKKK    
Sbjct: 61  YLRPDIKHGGFTEEEDNIICSLYSQMGSRWSLIASQLPGRTDNDVKNYWNTKLKKKLLAG 120

Query: 121 NSSFSKPPNPIV-------VVTDPPRYSSTSTANSLKLHDDHEH-----NINTNFNM--- 180
            SSF+   N  +       + T P  Y+   +  SL +  D  +     N +T+ NM   
Sbjct: 121 KSSFNVENNGGLLNANNNNIPTQPLPYNLDYSTTSLPILSDVSYGFSVSNCSTSQNMGLD 180

Query: 181 ----FSSHPPFDQI----PMLNNNNNPIIPELSTSSSS 193
               FS+      +    P L+N++N I+   S+   S
Sbjct: 181 PVMQFSTPDTITNLSQSGPNLDNSHNNIVVVSSSQEGS 218

[Close]

BLAST of Cucsa.288590.1 vs. TAIR10
Match: AT2G36890.1 (AT2G36890.1 Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-57
Identity = 100/160 (62.50%), Postives = 128/160 (80.00%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDA L  +I K GTGGNWIALPHKAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+I+HG FT+EEDN+I SL+++IGSRW+VIA+ L GRTDND+KN+WNTKLKKK  ++
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIAT 120

Query: 121 FSKPP-NPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTN 160
            + PP + + + T     S +S+++   ++    +N +TN
Sbjct: 121 MAPPPHHHLAIATSSSSASPSSSSHYNMINSLLPYNPSTN 160

[Close]

BLAST of Cucsa.288590.1 vs. TAIR10
Match: AT4G37780.1 (AT4G37780.1 myb domain protein 87)

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-56
Identity = 99/163 (60.74%), Postives = 126/163 (77.30%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDK +VK+GPWS +EDA L ++I KHGTG NWI+LP + G+ RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP++KHGGFT EED +ICSLY TIGSRW++IASQLPGRTDND+KN+WNT+LKKK  S 
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLSK 120

Query: 121 FSKP-PNPIVVVTDPPRYSSTSTANSLKL-HDDHEHNINTNFN 162
             K     + V  +    SS+S+ N +++ HD++  +  T +N
Sbjct: 121 QGKAFHQQLNVKFERGTTSSSSSQNQIQIFHDENTKSNQTLYN 163

[Close]

BLAST of Cucsa.288590.1 vs. TAIR10
Match: AT5G57620.1 (AT5G57620.1 myb domain protein 36)

HSP 1 Score: 215.7 bits (548), Expect = 3.1e-56
Identity = 111/216 (51.39%), Postives = 142/216 (65.74%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+ED  L  +I K+GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHGGF++EED +I SLY +IGSRW++IA+QLPGRTDND+KN+WNTKLKKK    
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 FSKPPNPIVVVTD-------------PPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHP 180
             K  N    +TD              P+  S S    L+LH   + N+ + F+ F ++P
Sbjct: 121 -QKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQ-NLQSPFSSFYNNP 180

Query: 181 PF--DQIPMLNNNNNPIIPELSTSSSSISLPIEQNH 202
                  P+L +      P+L++  S   L +  +H
Sbjct: 181 ILWPKLHPLLQSTTTNQNPKLASQESFHPLGVNVDH 214

[Close]

BLAST of Cucsa.288590.1 vs. TAIR10
Match: AT3G49690.1 (AT3G49690.1 myb domain protein 84)

HSP 1 Score: 214.5 bits (545), Expect = 7.0e-56
Identity = 91/116 (78.45%), Postives = 107/116 (92.24%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+EDA L ++I   GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKK 117
           YLRP+IKHGGF++EE+N+ICSLY TIGSRW++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

[Close]

BLAST of Cucsa.288590.1 vs. TAIR10
Match: AT5G65790.1 (AT5G65790.1 myb domain protein 68)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-55
Identity = 91/116 (78.45%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VK+GPWSP+EDA L  +I   GTGGNWIALP K GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKK 117
           YLRP+IKHGGF++EEDN+IC+LY TIGSRW++IA+QLPGRTDND+KN+WNT+LKKK
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116

[Close]

BLAST of Cucsa.288590.1 vs. NCBI nr
Match: gi|449436058|ref|XP_004135811.1| (PREDICTED: transcription factor RAX2-like [Cucumis sativus])

HSP 1 Score: 512.7 bits (1319), Expect = 3.5e-142
Identity = 239/241 (99.17%), Postives = 240/241 (99.59%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180
           FSKPPNPIVVVTDPPRYS+TSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN
Sbjct: 121 FSKPPNPIVVVTDPPRYSATSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180

Query: 181 PIIPELSTSSSSISLPIEQNHLEFSGPRSDEAADILQSYFHGVYENNNQYPYEDDVMDGF 240
           PIIPELSTSSSSISLPIEQNHLEFSGP SDEAADILQSYFHGVYENNNQYPYEDDVMDGF
Sbjct: 181 PIIPELSTSSSSISLPIEQNHLEFSGPSSDEAADILQSYFHGVYENNNQYPYEDDVMDGF 240

Query: 241 D 242
           D
Sbjct: 241 D 241

[Close]

BLAST of Cucsa.288590.1 vs. NCBI nr
Match: gi|659099860|ref|XP_008450812.1| (PREDICTED: transcription factor RAX2-like [Cucumis melo])

HSP 1 Score: 451.4 bits (1160), Expect = 9.6e-124
Identity = 220/243 (90.53%), Postives = 229/243 (94.24%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFTQEEDNVICSLYSTIGSRWA+IASQLPGRTDNDVKNHWNTKLKKKFN+S
Sbjct: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAIIASQLPGRTDNDVKNHWNTKLKKKFNNS 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLK-LHDDHEHNINTNFNMFSSHPPFDQIPMLNNNN 180
            S+PPN  ++VTDP RYSST TANSLK LH+DHEHNINTN+NMFSSHP FDQIPMLNNNN
Sbjct: 121 LSEPPNSTMIVTDPSRYSST-TANSLKVLHNDHEHNINTNYNMFSSHPRFDQIPMLNNNN 180

Query: 181 NPIIPELSTSSSSISLP-IEQNHL-EFSGPRSDEAADILQSYFHGVYENNNQYPYEDDVM 240
           NPIIPELSTSSSSISLP IEQNHL EFSGP SDEA  ILQSYFHGVY+  NQYPYEDDVM
Sbjct: 181 NPIIPELSTSSSSISLPNIEQNHLEEFSGPGSDEAEIILQSYFHGVYD-YNQYPYEDDVM 240

[Close]

BLAST of Cucsa.288590.1 vs. NCBI nr
Match: gi|356564099|ref|XP_003550294.1| (PREDICTED: transcription factor RAX2-like [Glycine max])

HSP 1 Score: 238.0 bits (606), Expect = 1.7e-59
Identity = 120/232 (51.72%), Postives = 155/232 (66.81%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL  ++  HGTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKNYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRPDIKHGGFT+EEDN+IC+LY+ +GSRW+ IAS+LPGRTDNDVKN+WNTKLKKK  + 
Sbjct: 61  YLRPDIKHGGFTEEEDNIICTLYAQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAR 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINTNFNMFSSHPPFDQIPMLNNNNN 180
                  +  +T      STST +SL  + + + + N+ F   + + P   +P+L+ NN 
Sbjct: 121 ----KVTLKTLTHNDTLPSTSTPSSLTNNQNVKTSQNSPFPSQNQNSPPSVLPVLDANNA 180

Query: 181 PIIPELSTSSSSISLPIEQNHLEFSGPR-SDEAADILQSYFHGVYENNNQYP 232
             I    T++    +  +Q H     P+  D+    + +    +  NNN  P
Sbjct: 181 LFI----TNNEKSIISFDQTHHGLYSPQVMDDVVSQIGASSRIINNNNNNNP 224

[Close]

BLAST of Cucsa.288590.1 vs. NCBI nr
Match: gi|695038316|ref|XP_009406664.1| (PREDICTED: transcription factor RAX3-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 237.3 bits (604), Expect = 2.9e-59
Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL A+I KHGTGGNWIALPHK GL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKATVKRGPWSPEEDATLKAYIEKHGTGGNWIALPHKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKFNSS 120
           YLRP+IKHGGF+ EED++ICSLYS+IGSRW++IA+QLPGRTDND+KNHWNT+LKKK    
Sbjct: 61  YLRPNIKHGGFSVEEDHIICSLYSSIGSRWSIIAAQLPGRTDNDIKNHWNTRLKKKLLGK 120

Query: 121 FSKPPNPIVVVTDPPRYSSTSTANSLKLHDDHEHNINT----NFNMFSSHPPFDQIPMLN 180
             +PP P  +  +     ST  AN++ L   H   ++        +     PF     L 
Sbjct: 121 PREPPQPRCLSVN---QVSTEVANAMSL-QTHPQTLSAPALERMQLRGCEDPFFYHHPLG 180

Query: 181 NNNNPIIPELSTSSSSISLPIEQNH 202
           +    +  +  T +S+ + PI+ +H
Sbjct: 181 DK---LFEDQHTDTSTSTTPIDSSH 198

[Close]

BLAST of Cucsa.288590.1 vs. NCBI nr
Match: gi|1009135639|ref|XP_015885092.1| (PREDICTED: transcription factor RAX2-like [Ziziphus jujuba])

HSP 1 Score: 232.3 bits (591), Expect = 9.2e-58
Identity = 133/282 (47.16%), Postives = 164/282 (58.16%), Query Frame = 1


Query: 1   MGRAPCCDKASVKRGPWSPQEDATLTAFIHKHGTGGNWIALPHKAGLNRCGKSCRLRWLN 60
           MGRAPCCDKA+VKRGPWSP+EDATL +++  HGTGGNWIALP KAGL RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDATLKSYVESHGTGGNWIALPRKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPDIKHGGFTQEEDNVICSLYSTIGSRWAVIASQLPGRTDNDVKNHWNTKLKKKF--- 120
           YLRPDIKHGGFT+EEDN ICSLY  +GSRW+VIASQLPGRTDNDVKN+WNTKL+KK    
Sbjct: 61  YLRPDIKHGGFTEEEDNTICSLYLQMGSRWSVIASQLPGRTDNDVKNYWNTKLRKKMIAG 120

Query: 121 -----NSSFSKPPNPIVVVTD---------PPRYSSTSTANS--------------LKLH 180
                 S+ S    PI   T          PP +  T T +S              L  +
Sbjct: 121 KINLTTSTSSSQATPINHATALPASSTSIVPPCFPKTETHDSAFPNLQTQNSAVSNLTDN 180

Query: 181 DDHEHNINTNFNMFSSHPPFDQIPMLNN-----NNNPIIPELSTSSSSISL---PIEQNH 235
            +H ++   +FN +  +P F             NN+PI    S+S    S+   P   +H
Sbjct: 181 INHGYSQRVSFNPYLCNPRFMDFSEFGTSTTTCNNSPINVNYSSSQEGSSISDSPAIGDH 240

The following BLAST results are available for this feature:

BLAST of Cucsa.288590.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAX2_ARATH	2.9e-56	62.50	Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1	[more]
MYB36_ARATH	5.6e-55	51.39	Transcription factor MYB36 OS=Arabidopsis thaliana GN=MYB36 PE=1 SV=1	[more]
RAX3_ARATH	1.2e-54	78.45	Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1	[more]
RAX1_ARATH	3.7e-51	51.21	Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1	[more]
MYB80_ARATH	7.5e-44	48.35	Transcription factor MYB80 OS=Arabidopsis thaliana GN=MYB80 PE=1 SV=1	[more]

BLAST of Cucsa.288590.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZB2_CUCSA	2.5e-142	99.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575180 PE=4 SV=1	[more]
K7MNI7_SOYBN	1.2e-59	51.72	Uncharacterized protein OS=Glycine max GN=GLYMA_17G231900 PE=4 SV=1	[more]
M0TBM8_MUSAM	2.0e-59	56.10	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A0D2LTS6_GOSRA	8.4e-58	54.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024300 PE=4 SV=1	[more]
A0A0D2N4Q1_GOSRA	1.1e-57	55.96	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G024300 PE=4 SV=1	[more]

BLAST of Cucsa.288590.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G36890.1	1.7e-57	62.50	Duplicated homeodomain-like superfamily protein	[more]
AT4G37780.1	2.4e-56	60.74	myb domain protein 87	[more]
AT5G57620.1	3.1e-56	51.39	myb domain protein 36	[more]
AT3G49690.1	7.0e-56	78.45	myb domain protein 84	[more]
AT5G65790.1	1.2e-55	78.45	myb domain protein 68	[more]

BLAST of Cucsa.288590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436058\|ref\|XP_004135811.1\|	3.5e-142	99.17	PREDICTED: transcription factor RAX2-like [Cucumis sativus]	[more]
gi\|659099860\|ref\|XP_008450812.1\|	9.6e-124	90.53	PREDICTED: transcription factor RAX2-like [Cucumis melo]	[more]
gi\|356564099\|ref\|XP_003550294.1\|	1.7e-59	51.72	PREDICTED: transcription factor RAX2-like [Glycine max]	[more]
gi\|695038316\|ref\|XP_009406664.1\|	2.9e-59	56.10	PREDICTED: transcription factor RAX3-like [Musa acuminata subsp. malaccensis]	[more]
gi\|1009135639\|ref\|XP_015885092.1\|	9.2e-58	47.16	PREDICTED: transcription factor RAX2-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.288590	Cucsa.288590	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.288590.1	Cucsa.288590.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.288590.1.CDS.1	Cucsa.288590.1.CDS.1	CDS
Cucsa.288590.1.CDS.2	Cucsa.288590.1.CDS.2	CDS
Cucsa.288590.1.CDS.3	Cucsa.288590.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 69..111 score: 1.4E-11coord: 14..62 score: 1.8
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 67..115 score: 1.7E-11coord: 13..64 score: 2.6
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 15..69 score: 3.2E-23coord: 70..117 score: 3.7
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 11..109 score: 2.11
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 63..117 score: 20.08coord: 9..62 score: 12
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..117 score: 1.2E
None	No IPR available	PANTHER	PTHR10641:SF603	SUBFAMILY NOT NAMED	coord: 1..117 score: 1.2E