Cucsa.272350.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.272350.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Late embryogenesis abundant protein group 8 protein
Location	scaffold02500 : 943897 .. 944127 (+)
Sequence length	231

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGAAGGCCCCGGTGGAAGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATATAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGTGGAGGGGCATCTTGTGCCCAAGCCTAATCAGGGCGGCGGCACCGATGCACCCACCTTGTCCGGCAGCGGCTTACCGGAGGTGCAGCCTACCACCATTGATATCGTTACCAAACAAGGCCTTATTCGTTGA

mRNA sequence

ATGGAAGAGAAGGCCCCGGTGGAAGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATATAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGTGGAGGGGCATCTTGTGCCCAAGCCTAATCAGGGCGGCGGCACCGATGCACCCACCTTGTCCGGCAGCGGCTTACCGGAGGTGCAGCCTACCACCATTGATATCGTTACCAAACAAGGCCTTATTCGTTGA

Coding sequence (CDS)

ATGGAAGAGAAGGCCCCGGTGGAAGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATATAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGTGGAGGGGCATCTTGTGCCCAAGCCTAATCAGGGCGGCGGCACCGATGCACCCACCTTGTCCGGCAGCGGCTTACCGGAGGTGCAGCCTACCACCATTGATATCGTTACCAAACAAGGCCTTATTCGTTGA

Protein sequence

MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR*

Homology

[Close]

BLAST of Cucsa.272350.1 vs. TrEMBL
Match: A0A0A0L5Y6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 4.9e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1   MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 60
           MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE
Sbjct: 80  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 139

Query: 61  VQPTTIDIVTKQGLIR 77
           VQPTTIDIVTKQGLIR
Sbjct: 140 VQPTTIDIVTKQGLIR 155

[Close]

BLAST of Cucsa.272350.1 vs. TrEMBL
Match: F6I6V2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 2  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQ-GGGTDAPTLSGSGLPE 61
          EEKA     LP+ESSPY+KY DLE+YKR+GYG EGHL PKPNQ GGGTDAPTL+G+ L +
Sbjct: 19 EEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGGTDAPTLAGTDLSK 78

Query: 62 VQPTTIDIVTKQGL 75
             + +D   + G+
Sbjct: 79 GPASVVDAAHRVGI 92

[Close]

BLAST of Cucsa.272350.1 vs. TrEMBL
Match: B9T4J9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0396800 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-15
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 3  EKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG-GGTDAPTLSGSGLP-E 62
          +K  V+ +LP++ SPY++YKDLE+YK+KGYG EGHL PKP +G G TDAPTLSG  +P E
Sbjct: 22 KKESVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPKPGRGAGATDAPTLSGGSVPRE 81

Query: 63 VQPTTIDIVTKQ 73
             +TID +T +
Sbjct: 82 ADVSTIDAITSK 93

[Close]

BLAST of Cucsa.272350.1 vs. TrEMBL
Match: E5FHZ6_ARAHY (Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea GN=LEA8-1 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-14
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 2  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG-GGTDAPTLSGSGL-P 61
          +E +  E+LLP+E SPYVKYKDLE+YKRKGYG EGH  PKP +G G TDAPT SG+ +  
Sbjct: 19 KESSSTEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPGRGAGATDAPTPSGAAVSS 78

Query: 62 EVQPTTIDIVTKQGL 75
          E + +  + V +QG+
Sbjct: 79 EAELSATEAVNRQGV 93

[Close]

BLAST of Cucsa.272350.1 vs. TrEMBL
Match: A0A067KP57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08044 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-14
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 1  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLSGSGLP 60
          +EEK  + + LPL+SSPY++ +DLE+YKR+GYG EGH   KPN GGG TDAPTLSG+GLP
Sbjct: 15 IEEKKAMTEGLPLQSSPYLRCQDLEDYKRQGYGTEGHRQVKPNHGGGATDAPTLSGTGLP 74

Query: 61 EVQP 64
          E  P
Sbjct: 75 EGTP 78

[Close]

BLAST of Cucsa.272350.1 vs. TAIR10
Match: AT2G33690.1 (AT2G33690.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-12
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 4  KAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLSGSGLP 60
          K+  +  LPLE+SPY KY+D+E+YK+  YG  GH   KP  GGG TDAPT SG   P
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGHGGGTTDAPTPSGDAAP 59

[Close]

BLAST of Cucsa.272350.1 vs. TAIR10
Match: AT2G23110.1 (AT2G23110.1 Late embryogenesis abundant protein, group 6)

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-09
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 1


Query: 2  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLS-----G 61
          E K    D L    +PY+ Y +LE+YK KGYG +GH  PK   GGG TDAPT S     G
Sbjct: 13 EVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPTPSGGLGRG 72

Query: 62 SGLPEVQPTTIDIVTKQGL 75
           G      ++ D + +QG+
Sbjct: 73 GGAASTDLSSTDAINRQGV 91

[Close]

BLAST of Cucsa.272350.1 vs. NCBI nr
Match: gi|700200373|gb|KGN55531.1| (hypothetical protein Csa_4G664380 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 7.0e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1   MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 60
           MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE
Sbjct: 80  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 139

Query: 61  VQPTTIDIVTKQGLIR 77
           VQPTTIDIVTKQGLIR
Sbjct: 140 VQPTTIDIVTKQGLIR 155

[Close]

BLAST of Cucsa.272350.1 vs. NCBI nr
Match: gi|659105076|ref|XP_008453005.1| (PREDICTED: uncharacterized protein LOC103493838 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 1  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 60
          MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGTDAPTLSGSG PE
Sbjct: 13 MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGYPE 72

Query: 61 VQPTTIDIVTKQGLI 76
          VQPTTID+VTKQGLI
Sbjct: 73 VQPTTIDVVTKQGLI 87

[Close]

BLAST of Cucsa.272350.1 vs. NCBI nr
Match: gi|731427493|ref|XP_010663997.1| (PREDICTED: uncharacterized protein LOC104882448 [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 2  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQ-GGGTDAPTLSGSGLPE 61
          EEKA     LP+ESSPY+KY DLE+YKR+GYG EGHL PKPNQ GGGTDAPTL+G+ L +
Sbjct: 19 EEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGGTDAPTLAGTDLSK 78

Query: 62 VQPTTIDIVTKQGL 75
             + +D   + G+
Sbjct: 79 GPASVVDAAHRVGI 92

[Close]

BLAST of Cucsa.272350.1 vs. NCBI nr
Match: gi|255584906|ref|XP_002533168.1| (PREDICTED: uncharacterized protein LOC8261670 [Ricinus communis])

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-15
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 3  EKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG-GGTDAPTLSGSGLP-E 62
          +K  V+ +LP++ SPY++YKDLE+YK+KGYG EGHL PKP +G G TDAPTLSG  +P E
Sbjct: 22 KKESVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPKPGRGAGATDAPTLSGGSVPRE 81

Query: 63 VQPTTIDIVTKQ 73
             +TID +T +
Sbjct: 82 ADVSTIDAITSK 93

[Close]

BLAST of Cucsa.272350.1 vs. NCBI nr
Match: gi|1012126867|ref|XP_015963873.1| (PREDICTED: uncharacterized protein LOC107487691 [Arachis duranensis])

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-14
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 2   EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG-GGTDAPTLSGSGL-P 61
           +E +  E+LLP+E SPYVKYKDLE+YKRKGYG EGH  PKP +G G TDAPT SG+ +  
Sbjct: 34  KESSSTEELLPMEDSPYVKYKDLEDYKRKGYGTEGHQEPKPGRGAGATDAPTPSGAAVSS 93

Query: 62  EVQPTTIDIVTKQGL 75
           E + +  + V +QG+
Sbjct: 94  EAELSATEAVNRQGV 108

The following BLAST results are available for this feature:

BLAST of Cucsa.272350.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Y6_CUCSA	4.9e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664380 PE=4 SV=1	[more]
F6I6V2_VITVI	1.3e-15	59.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00820 PE=4 SV=...	[more]
B9T4J9_RICCO	3.6e-15	56.94	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0396800 PE=4 SV=1	[more]
E5FHZ6_ARAHY	1.4e-14	56.00	Late embryogenesis abundant protein group 8 protein OS=Arachis hypogaea GN=LEA8-...	[more]
A0A067KP57_JATCU	2.4e-14	64.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08044 PE=4 SV=1	[more]

BLAST of Cucsa.272350.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33690.1	9.8e-12	54.39	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	2.0e-09	41.77	Late embryogenesis abundant protein, group 6	[more]

BLAST of Cucsa.272350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200373\|gb\|KGN55531.1\|	7.0e-36	100.00	hypothetical protein Csa_4G664380 [Cucumis sativus]	[more]
gi\|659105076\|ref\|XP_008453005.1\|	1.9e-33	94.67	PREDICTED: uncharacterized protein LOC103493838 [Cucumis melo]	[more]
gi\|731427493\|ref\|XP_010663997.1\|	1.8e-15	59.46	PREDICTED: uncharacterized protein LOC104882448 [Vitis vinifera]	[more]
gi\|255584906\|ref\|XP_002533168.1\|	5.2e-15	56.94	PREDICTED: uncharacterized protein LOC8261670 [Ricinus communis]	[more]
gi\|1012126867\|ref\|XP_015963873.1\|	2.0e-14	56.00	PREDICTED: uncharacterized protein LOC107487691 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018930	LEA-18

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.272350	Cucsa.272350	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.272350.1	Cucsa.272350.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.272350.1.CDS.1	Cucsa.272350.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 4..74 score: 4.4
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 1..73 score: 6.0
None	No IPR available	PANTHER	PTHR33922:SF3	LATE EMBRYOGENESIS ABUNDANT PROTEIN, GROUP 6	coord: 1..73 score: 6.0