Cucsa.259720.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.259720.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	StAR-related lipid transfer protein 9, putative
Location	scaffold02229 : 6094685 .. 6096874 (+)
Sequence length	687

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCAGGCAAAAGCGGAGAAGAGAGATGGAGGAGAACGGAGGAAGCGACGCTGGTAGCAACGCCCATTGGTGGTGGGCTTTCGCCGGTGCAGCGCAGTTAGGTTGGGGTATCGCCTCTTTCCGGCGAGGATTTATCGGTGATTCCAGCAACATGCCCCTCAAGGCCTTCGCCGTCGCTTCGCTTTTCGTCGGCGCTGCCGCCTCGTCTACAATTGCTTCCCTCAAGGCCTCTGGCATCCACAAGGTTCACCTCACTGCTTTTCTACTGTGTATTTATCAGTCGCATTTTTTCTTCTTCCCTCCCCCTCATCCTGGATTAGGTTAGAGGTTAATTGGACGACTTTGATCAGTCTGGTTTTGTACTCGTATCGGACTTTGGTGAATTAACTGAACAGATTAGTTTTGATTCGTCAGTATGCCGTGAATTTAGCTAATTTCCAGGAGGAATGGGATTTTGAGTTTTTGGCAGCTTAGTTAGCTTAATTTGTTAATGTTTGATTCGAACTATCAACCTTGTTGAAGTGAACAGTGAAATTGATCAGGGGATGAAAAAATACTTCAGTGGGTGTCAGTTTCTTTGGTCGCATTAGATTATTTGTTGCTGATGCCTGATTTTAGTCATGCTGTTTATCTTGGGCAGTTTGTTCGCTTGGCTTGATGTTGTGCTTAAATTCGAGAATCTTCTTAGTTGAATTTAGGTGTTTTGATTTTGAGTGGTTGATTCATGCCTATTTTTCATGTCGTTTTTTtCTGTTGGTATTATCCGCTTCTTTAAATTTAGAGGTTTAGGGTGTGGGATAAAACTAAAAGTTCTAACTTTCATAAACCTCATTTCAAAACTACTCATAGAATATAATATTTTAGAATGTTGAACAGAAAGTGTAATGATGGAGTTAAGTCTAAAAGAATGACATTCAAGCACAAACCTTTTGTCCAAAATTCTAATGTTTTTTCTACTTCAAGATAATTTTGAAACCTTTATGGAGCATTTTTTAATAAAGGACAAAGTTCAAGAGTGTTTTTTtCAAATAAAaTAAAATATAGTCTAAATTCTGGTACACTTGGAAACCGCATACAAGTTGAGGCTTTGCCTCCTTCAAGTGGCAATCCTTATGGTAAAGGTTTGATGCTTTGGGTGGGAATTTAACCTTTCATTGTCTTTCCGTAGAAAGCGGTGTTGAACTCAATTCTGAAGCCTTCTGTCAGTTCAATGCACAAGTAACAGATGCTTTTTTCGGTTAATAAGAATAACTGTAGAGTATCTGTTGTTTGTTTAGGAGTATGAATGGTTTATTTGTTTGTTTTTAATATCATAGCTTCACTGTAATTGGTATGTGATAGGCAGAGGTAATTTGAACATATTAAGAGCGATGCTTTTTCACATAGGTGAAAGCCTCCATGATCAACAAGGTGGTAGGTAGCATTCATGGTTATGAGAGGCTTGTGATATAGAAATAGGATATCGATGACACTGTTATGAACTTAGAAGAACTTTGACGACCAGAAATGGTTTTCCTTTtCCCTTGTTGTTCTAATGGGTGAACAAACGAAGCCATTGTTATCAGTTCTTACAAAATCATGGGTTGGCGAAACGATTTCAATGGATGCAGAATTTCTTAAGAAGTGTTTTGATCTGGACGAAAGAAAAGGAGAACACGTCTGAAAAAGAAATTTACTAGATCTAGAAATGGGTGATGAAGTGAATGGTACGATTACTAATGTTTGGTTTTGGGGTGTACTGGAACAGGTGGAAGACGTGATGGAAGTAGGGGCCAGAATCAGAAGTGGATTGGGGATTCGTTCAAGGGCACAAGATAAATGAATAAATGAATATGGCAGCCTTTGTTATTCTATTCTGTGGGTAACTGGGAACATCTTCACTTTCACTTTGAGGAGTGCATATTCTCACCCACATGAGTCAACTAAAGTCATTCCATAGCAGACTGAGCACTTTCTTCGATGGTGAAAGAGTCACGAAGGGTCAGATTCCATTTTTCTTTATCAACCCTTAATTTGGTACTTCCTCTTATAGAGAGGTCTCCTATAATTATTTTGCTGTGTAGCAATGATATCAGATAACTGATTAAGGGCTTAGAAAGTTCTTCTAAATTGCCCTTAATTTACTTTAGATGTCCAACCTTCCTAAAGCAGCGATTTCTTTCTTCATTTAAGTAAAATCCTCTGCCGATT

mRNA sequence

AGTCAGGCAAAAGCGGAGAAGAGAGATGGAGGAGAACGGAGGAAGCGACGCTGGTAGCAACGCCCATTGGTGGTGGGCTTTCGCCGGTGCAGCGCAGTTAGGTTGGGGTATCGCCTCTTTCCGGCGAGGATTTATCGGTGATTCCAGCAACATGCCCCTCAAGGCCTTCGCCGTCGCTTCGCTTTTCGTCGGCGCTGCCGCCTCGTCTACAATTGCTTCCCTCAAGGCCTCTGGCATCCACAAGGTGGAAGACGTGATGGAAGTAGGGGCCAGAATCAGAAGTGGATTGGGGATTCGTTCAAGGGCACAAGATAAATGAATAAATGAATATGGCAGCCTTTGTTATTCTATTCTGTGGGTAACTGGGAACATCTTCACTTTCACTTTGAGGAGTGCATATTCTCACCCACATGAGTCAACTAAAGTCATTCCATAGCAGACTGAGCACTTTCTTCGATGGTGAAAGAGTCACGAAGGGTCAGATTCCATTTTTCTTTATCAACCCTTAATTTGGTACTTCCTCTTATAGAGAGGTCTCCTATAATTATTTTGCTGTGTAGCAATGATATCAGATAACTGATTAAGGGCTTAGAAAGTTCTTCTAAATTGCCCTTAATTTACTTTAGATGTCCAACCTTCCTAAAGCAGCGATTTCTTTCTTCATTTAAGTAAAATCCTCTGCCGATT

Coding sequence (CDS)

ATGGAGGAGAACGGAGGAAGCGACGCTGGTAGCAACGCCCATTGGTGGTGGGCTTTCGCCGGTGCAGCGCAGTTAGGTTGGGGTATCGCCTCTTTCCGGCGAGGATTTATCGGTGATTCCAGCAACATGCCCCTCAAGGCCTTCGCCGTCGCTTCGCTTTTCGTCGGCGCTGCCGCCTCGTCTACAATTGCTTCCCTCAAGGCCTCTGGCATCCACAAGGTGGAAGACGTGATGGAAGTAGGGGCCAGAATCAGAAGTGGATTGGGGATTCGTTCAAGGGCACAAGATAAATGA

Protein sequence

MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAASSTIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK*

Homology

[Close]

BLAST of Cucsa.259720.1 vs. TrEMBL
Match: A0A0A0L700_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118070 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60
          MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS
Sbjct: 1  MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60

Query: 61 STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 98
          STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK
Sbjct: 61 STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 97

[Close]

BLAST of Cucsa.259720.1 vs. TrEMBL
Match: F6GV86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g02030 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.2e-28
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 1


Query: 1  MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60
          MEENG   +G  +HWWWA A AAQLGWG+ S+RRG +GDSS MP+KAF VASLFVGAAAS
Sbjct: 1  MEENGHG-SGDGSHWWWALASAAQLGWGVFSYRRGGVGDSSLMPVKAFGVASLFVGAAAS 60

Query: 61 STIASLKASGIHKVEDVMEVGARIRSGLGIRSR 94
          +    L ASGIHKVED+ E+GA IR+GLG+R R
Sbjct: 61 AAFGVLHASGIHKVEDLKEMGANIRTGLGVRPR 92

[Close]

BLAST of Cucsa.259720.1 vs. TrEMBL
Match: A0A0D2QYT2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G039500 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 3   ENGGSDAGS--NAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 62
           ENGG +     N+HW+WA A  +QLGW ++S+RRG+ GD   MPLKAFAVASLF+GA+AS
Sbjct: 5   ENGGDNDKILINSHWYWAIASVSQLGWAVSSYRRGYTGDHRFMPLKAFAVASLFLGASAS 64

Query: 63  STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 98
           +++A LKASGIHKVED+M VGA IRSGLGIR R  DK
Sbjct: 65  ASVAFLKASGIHKVEDLMGVGASIRSGLGIRPRTGDK 101

[Close]

BLAST of Cucsa.259720.1 vs. TrEMBL
Match: A0A0B0PN24_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12557 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.3e-27
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 3   ENGGSDAGS--NAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 62
           ENGG +     N+HW+WA A  +QLGW ++S+R+G+ GD   MPLKAFAVASLF+GA+AS
Sbjct: 5   ENGGDNGKIHINSHWYWAIASVSQLGWAVSSYRKGYTGDHRFMPLKAFAVASLFLGASAS 64

Query: 63  STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 98
           +++A LKASGIHKVED+M VGA IRSGLGIR R  DK
Sbjct: 65  ASVAFLKASGIHKVEDLMGVGASIRSGLGIRPRTGDK 101

[Close]

BLAST of Cucsa.259720.1 vs. TrEMBL
Match: V4U8X0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023020mg PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-25
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 1


Query: 7  SDAGSNA-HWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAASSTIAS 66
          +DAG N  HWWW  A   QLGWGIASFR+G+ GDS  MP+KAF VASLFVG+AAS+++A 
Sbjct: 5  TDAGVNGTHWWWTLASTGQLGWGIASFRKGYAGDSRLMPVKAFGVASLFVGSAASASLAF 64

Query: 67 LKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 98
          L+ASGI KVED++EVGA IR+ LGI SR   K
Sbjct: 65 LQASGIRKVEDLLEVGANIRTRLGIPSRTPHK 96

[Close]

BLAST of Cucsa.259720.1 vs. TAIR10
Match: AT3G60480.1 (AT3G60480.1 unknown protein)

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-24
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 1


Query: 2   EENGGSDAGSNA------HWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFV 61
           E+N G+ AG ++      HWWWA    AQ+ WGI   RRG+ GD   MPLKAF VASLFV
Sbjct: 3   EQNAGTGAGESSLLDGSGHWWWALGSGAQIMWGIRLIRRGYAGDVRLMPLKAFGVASLFV 62

Query: 62  GAAASSTIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 98
           G+ A+S++A ++A+GIH V+D +++GA IR+ LG+  +  DK
Sbjct: 63  GSLATSSVALVRATGIHTVQDAIDLGANIRTNLGVTPQIPDK 104

[Close]

BLAST of Cucsa.259720.1 vs. NCBI nr
Match: gi|449431982|ref|XP_004133779.1| (PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60
          MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS
Sbjct: 1  MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60

Query: 61 STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 98
          STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK
Sbjct: 61 STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 97

[Close]

BLAST of Cucsa.259720.1 vs. NCBI nr
Match: gi|659074821|ref|XP_008437814.1| (PREDICTED: uncharacterized protein LOC103483131 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-45
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 1


Query: 1   MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60
           MEENGGSD GSNAHWWWAFAGA QLGWGIASFRRGF+GDSS MPLKAFAVASLFVGAAAS
Sbjct: 29  MEENGGSDGGSNAHWWWAFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAAS 88

Query: 61  STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 98
           S IASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK
Sbjct: 89  SAIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 125

[Close]

BLAST of Cucsa.259720.1 vs. NCBI nr
Match: gi|1009140453|ref|XP_015887660.1| (PREDICTED: uncharacterized protein LOC107422691 [Ziziphus jujuba])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 1


Query: 5   GGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAASSTIA 64
           GG   GS +HWWW  A AAQLGWGI S RRG+ G S+ MP KAF VASLFVG+AAS+++A
Sbjct: 15  GGGGVGSESHWWWGMASAAQLGWGIVSLRRGYTGHSNLMPFKAFTVASLFVGSAASASVA 74

Query: 65  SLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 98
           SL ASGIHKVED+MEVGA IR+GLGIR R +++
Sbjct: 75  SLHASGIHKVEDLMEVGANIRTGLGIRPRTREE 107

[Close]

BLAST of Cucsa.259720.1 vs. NCBI nr
Match: gi|225453438|ref|XP_002275512.1| (PREDICTED: uncharacterized protein LOC100266789 [Vitis vinifera])

HSP 1 Score: 131.3 bits (329), Expect = 9.0e-28
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 1


Query: 1  MEENGGSDAGSNAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 60
          MEENG   +G  +HWWWA A AAQLGWG+ S+RRG +GDSS MP+KAF VASLFVGAAAS
Sbjct: 1  MEENGHG-SGDGSHWWWALASAAQLGWGVFSYRRGGVGDSSLMPVKAFGVASLFVGAAAS 60

Query: 61 STIASLKASGIHKVEDVMEVGARIRSGLGIRSR 94
          +    L ASGIHKVED+ E+GA IR+GLG+R R
Sbjct: 61 AAFGVLHASGIHKVEDLKEMGANIRTGLGVRPR 92

[Close]

BLAST of Cucsa.259720.1 vs. NCBI nr
Match: gi|823146835|ref|XP_012473321.1| (PREDICTED: uncharacterized protein LOC105790317 [Gossypium raimondii])

HSP 1 Score: 128.6 bits (322), Expect = 5.8e-27
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 3   ENGGSDAGS--NAHWWWAFAGAAQLGWGIASFRRGFIGDSSNMPLKAFAVASLFVGAAAS 62
           ENGG +     N+HW+WA A  +QLGW ++S+RRG+ GD   MPLKAFAVASLF+GA+AS
Sbjct: 5   ENGGDNDKILINSHWYWAIASVSQLGWAVSSYRRGYTGDHRFMPLKAFAVASLFLGASAS 64

Query: 63  STIASLKASGIHKVEDVMEVGARIRSGLGIRSRAQDK 98
           +++A LKASGIHKVED+M VGA IRSGLGIR R  DK
Sbjct: 65  ASVAFLKASGIHKVEDLMGVGASIRSGLGIRPRTGDK 101

The following BLAST results are available for this feature:

BLAST of Cucsa.259720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L700_CUCSA	2.1e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118070 PE=4 SV=1	[more]
F6GV86_VITVI	6.2e-28	67.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g02030 PE=4 SV=...	[more]
A0A0D2QYT2_GOSRA	4.0e-27	64.95	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G039500 PE=4 SV=1	[more]
A0A0B0PN24_GOSAR	5.3e-27	63.92	Uncharacterized protein OS=Gossypium arboreum GN=F383_12557 PE=4 SV=1	[more]
V4U8X0_9ROSI	2.2e-25	65.22	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023020mg PE=4 SV=1	[more]

BLAST of Cucsa.259720.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60480.1	2.9e-24	49.02	unknown protein	[more]

BLAST of Cucsa.259720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431982\|ref\|XP_004133779.1\|	3.0e-47	100.00	PREDICTED: uncharacterized protein LOC101221895 [Cucumis sativus]	[more]
gi\|659074821\|ref\|XP_008437814.1\|	6.2e-45	94.85	PREDICTED: uncharacterized protein LOC103483131 [Cucumis melo]	[more]
gi\|1009140453\|ref\|XP_015887660.1\|	2.8e-29	67.74	PREDICTED: uncharacterized protein LOC107422691 [Ziziphus jujuba]	[more]
gi\|225453438\|ref\|XP_002275512.1\|	9.0e-28	67.74	PREDICTED: uncharacterized protein LOC100266789 [Vitis vinifera]	[more]
gi\|823146835\|ref\|XP_012473321.1\|	5.8e-27	64.95	PREDICTED: uncharacterized protein LOC105790317 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.259720	Cucsa.259720	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.259720.1	Cucsa.259720.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.259720.1.five_prime_UTR.1	Cucsa.259720.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.259720.1.CDS.1	Cucsa.259720.1.CDS.1	CDS
Cucsa.259720.1.CDS.2	Cucsa.259720.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.259720.1.three_prime_UTR.1	Cucsa.259720.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37744	FAMILY NOT NAMED	coord: 1..97 score: 1.7
None	No IPR available	PANTHER	PTHR37744:SF1	SUBFAMILY NOT NAMED	coord: 1..97 score: 1.7