Cucsa.259560.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTTAGTGTTAGTACAAATCATTCACTCTCGTAACACCTGGTTTAGGAATAAAGCCTTGTGATAACCAAACTGAATCTTAAGCAGCATGCTAAATGAAGATGCTGAATATTCTCCCCCAGCATCCATGGCAGAGGCTTTTGCCATGAGAAAGAAGAGTATGAACAGAAGAAGGTTTAGCGAAGAACAAATCAAATCACTTGAGTCTATTTTCGAATCTGAGTCTAGGCTTGAGCCCAGAAAGAAGTTGCAGCTGGCGGGAGAGCTGGGTTTGCATCCACGCCAGGTTGCAATATGGTTTCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTTGAACGAGACTACAGTGTTTTACGAGCTAATTACAATACTCTAGCTTCCCGGTTTGAAGCTCTTAAGAAGGAAAAACAAGCCTTGACTATGCAGGTATGTGTTCTTTATTTCTCTAGGAAAAGACCCGCTGTTTCTTGAATTTTGCTAATCATTGTTGTTTCTTTTATTTGGGCAGTTGCAGAAGCTAAATAATCTGGTACAGCGGTCCATGGAGGAAACTGAGAGCTGCAGGGGAGTTCTCTCCATAGAAACCATTGATGGCAAGTCTGAAATTGACCACAGAACTAAGTACGAGTCTGAAGTAAAACCTTGTTTGTCAGCTGAAGAGAAATCAGAACATGAATTAGAGGTTCTTTCCAACTACGGTAGTGGCGTAAAGGAAGCCTATATTGGATTAGAGGATCCCCAGCTCAGGGAATCTTCTCAAGGTTCCCTGATATCAACACCAAATTGGAGTAATCTAGACTCTGAAGGTCTTTTCAGTCAGTCTAATACCAATGGCCAGTGGTGGGACTTCTGGTCGTGAAAAGTCGAACCACCTAAAGAAACTATAGAGGATTTGTAAACAAATAAAATTCCAACCTTTTAAATAGATCATCCTAGCAATGATTTTGGCTCACAGGACGAGGAAGAGTTAAGAGCACAACGACTTCTATCAAGGACAGCAATGACTGAAATGTGGTGGTTTCAAGTACTGATGCTCCAAATTCACCACAATTTCAGATGGAATTCAGAAGAATTAGGTGAGCAACTCTAGGAAATACCGCCTGCAAAGGGTGTTGGCTTGGAAAACTGAAACAGTATGCTCGTATGCAGACAGGGTGCAGTTTGGAATGTTTTCAGTGTGTGAGAGTTCTTCTTCTTCTGTTTTTTCCCCTTTTTCTGTTTGGTTGGTTGGGGGTAGGGATGGGGGG TGTTAGTGTTAGTACAAATCATTCACTCTCGTAACACCTGGTTTAGGAATAAAGCCTTGTGATAACCAAACTGAATCTTAAGCAGCATGCTAAATGAAGATGCTGAATATTCTCCCCCAGCATCCATGGCAGAGGCTTTTGCCATGAGAAAGAAGAGTATGAACAGAAGAAGGTTTAGCGAAGAACAAATCAAATCACTTGAGTCTATTTTCGAATCTGAGTCTAGGCTTGAGCCCAGAAAGAAGTTGCAGCTGGCGGGAGAGCTGGGTTTGCATCCACGCCAGGTTGCAATATGGTTTCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTTGAACGAGACTACAGTGTTTTACGAGCTAATTACAATACTCTAGCTTCCCGGTTTGAAGCTCTTAAGAAGGAAAAACAAGCCTTGACTATGCAGTTGCAGAAGCTAAATAATCTGGTACAGCGGTCCATGGAGGAAACTGAGAGCTGCAGGGGAGTTCTCTCCATAGAAACCATTGATGGCAAGTCTGAAATTGACCACAGAACTAAGTACGAGTCTGAAGTAAAACCTTGTTTGTCAGCTGAAGAGAAATCAGAACATGAATTAGAGGTTCTTTCCAACTACGGTAGTGGCGTAAAGGAAGCCTATATTGGATTAGAGGATCCCCAGCTCAGGGAATCTTCTCAAGGTTCCCTGATATCAACACCAAATTGGAGTAATCTAGACTCTGAAGGTCTTTTCAGTCAGTCTAATACCAATGGCCAGTGGTGGGACTTCTGGTCGTGAAAAGTCGAACCACCTAAAGAAACTATAGAGGATTTGTAAACAAATAAAATTCCAACCTTTTAAATAGATCATCCTAGCAATGATTTTGGCTCACAGGACGAGGAAGAGTTAAGAGCACAACGACTTCTATCAAGGACAGCAATGACTGAAATGTGGTGGTTTCAAGTACTGATGCTCCAAATTCACCACAATTTCAGATGGAATTCAGAAGAATTAGGTGAGCAACTCTAGGAAATACCGCCTGCAAAGGGTGTTGGCTTGGAAAACTGAAACAGTATGCTCGTATGCAGACAGGGTGCAGTTTGGAATGTTTTCAGTGTGTGAGAGTTCTTCTTCTTCTGTTTTTTCCCCTTTTTCTGTTTGGTTGGTTGGGGGTAGGGATGGGGGG ATGCTAAATGAAGATGCTGAATATTCTCCCCCAGCATCCATGGCAGAGGCTTTTGCCATGAGAAAGAAGAGTATGAACAGAAGAAGGTTTAGCGAAGAACAAATCAAATCACTTGAGTCTATTTTCGAATCTGAGTCTAGGCTTGAGCCCAGAAAGAAGTTGCAGCTGGCGGGAGAGCTGGGTTTGCATCCACGCCAGGTTGCAATATGGTTTCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTTGAACGAGACTACAGTGTTTTACGAGCTAATTACAATACTCTAGCTTCCCGGTTTGAAGCTCTTAAGAAGGAAAAACAAGCCTTGACTATGCAGTTGCAGAAGCTAAATAATCTGGTACAGCGGTCCATGGAGGAAACTGAGAGCTGCAGGGGAGTTCTCTCCATAGAAACCATTGATGGCAAGTCTGAAATTGACCACAGAACTAAGTACGAGTCTGAAGTAAAACCTTGTTTGTCAGCTGAAGAGAAATCAGAACATGAATTAGAGGTTCTTTCCAACTACGGTAGTGGCGTAAAGGAAGCCTATATTGGATTAGAGGATCCCCAGCTCAGGGAATCTTCTCAAGGTTCCCTGATATCAACACCAAATTGGAGTAATCTAGACTCTGAAGGTCTTTTCAGTCAGTCTAATACCAATGGCCAGTGGTGGGACTTCTGGTCGTGA MLNEDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALTMQLQKLNNLVQRSMEETESCRGVLSIETIDGKSEIDHRTKYESEVKPCLSAEEKSEHELEVLSNYGSGVKEAYIGLEDPQLRESSQGSLISTPNWSNLDSEGLFSQSNTNGQWWDFWS*
BLAST of Cucsa.259560.1 vs. Swiss-Prot
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=1 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 8.2e-48 Identity = 112/227 (49.34%), Postives = 144/227 (63.44%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=1 SV=2) HSP 1 Score: 191.4 bits (485), Expect = 1.1e-47 Identity = 117/258 (45.35%), Postives = 155/258 (60.08%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. Swiss-Prot
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=2 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 1.4e-31 Identity = 67/97 (69.07%), Postives = 83/97 (85.57%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. Swiss-Prot
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 SV=2) HSP 1 Score: 137.9 bits (346), Expect = 1.4e-31 Identity = 67/97 (69.07%), Postives = 83/97 (85.57%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. Swiss-Prot
Match: HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica GN=HOX22 PE=2 SV=2) HSP 1 Score: 129.0 bits (323), Expect = 6.6e-29 Identity = 72/151 (47.68%), Postives = 94/151 (62.25%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TrEMBL
Match: A0A0A0L317_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119240 PE=4 SV=1) HSP 1 Score: 460.3 bits (1183), Expect = 1.4e-126 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TrEMBL
Match: B9I924_POPTR (Homeobox leucine zipper family protein OS=Populus trichocarpa GN=POPTR_0014s09860g PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 6.8e-65 Identity = 137/237 (57.81%), Postives = 175/237 (73.84%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TrEMBL
Match: B9GR61_POPTR (Homeobox leucine zipper family protein OS=Populus trichocarpa GN=POPTR_0002s17680g PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 3.4e-64 Identity = 137/239 (57.32%), Postives = 173/239 (72.38%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TrEMBL
Match: A0A096YDU1_ROSHC (Homeobox-leucine zipper protein 1 OS=Rosa hybrid cultivar GN=HB1 PE=2 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 6.3e-63 Identity = 146/243 (60.08%), Postives = 171/243 (70.37%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TrEMBL
Match: A0A067JWT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14207 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62 Identity = 138/248 (55.65%), Postives = 172/248 (69.35%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TAIR10
Match: AT3G61890.1 (AT3G61890.1 homeobox 12) HSP 1 Score: 191.8 bits (486), Expect = 4.6e-49 Identity = 112/227 (49.34%), Postives = 144/227 (63.44%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TAIR10
Match: AT2G46680.1 (AT2G46680.1 homeobox 7) HSP 1 Score: 191.4 bits (485), Expect = 6.1e-49 Identity = 117/258 (45.35%), Postives = 155/258 (60.08%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TAIR10
Match: AT2G22430.1 (AT2G22430.1 homeobox protein 6) HSP 1 Score: 115.2 bits (287), Expect = 5.5e-26 Identity = 57/126 (45.24%), Postives = 84/126 (66.67%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TAIR10
Match: AT5G65310.1 (AT5G65310.1 homeobox protein 5) HSP 1 Score: 112.5 bits (280), Expect = 3.6e-25 Identity = 55/125 (44.00%), Postives = 88/125 (70.40%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. TAIR10
Match: AT4G40060.1 (AT4G40060.1 homeobox protein 16) HSP 1 Score: 111.7 bits (278), Expect = 6.1e-25 Identity = 51/115 (44.35%), Postives = 79/115 (68.70%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. NCBI nr
Match: gi|449432008|ref|XP_004133792.1| (PREDICTED: homeobox-leucine zipper protein ATHB-12 [Cucumis sativus]) HSP 1 Score: 460.3 bits (1183), Expect = 2.0e-126 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. NCBI nr
Match: gi|659074881|ref|XP_008437846.1| (PREDICTED: homeobox-leucine zipper protein ATHB-7 [Cucumis melo]) HSP 1 Score: 416.8 bits (1070), Expect = 2.5e-113 Identity = 213/230 (92.61%), Postives = 219/230 (95.22%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. NCBI nr
Match: gi|224130632|ref|XP_002320889.1| (homeobox leucine zipper family protein [Populus trichocarpa]) HSP 1 Score: 255.4 bits (651), Expect = 9.7e-65 Identity = 137/237 (57.81%), Postives = 175/237 (73.84%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. NCBI nr
Match: gi|743827825|ref|XP_011023121.1| (PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Populus euphratica]) HSP 1 Score: 255.0 bits (650), Expect = 1.3e-64 Identity = 137/239 (57.32%), Postives = 173/239 (72.38%), Query Frame = 1
BLAST of Cucsa.259560.1 vs. NCBI nr
Match: gi|224068066|ref|XP_002302659.1| (homeobox leucine zipper family protein [Populus trichocarpa]) HSP 1 Score: 253.1 bits (645), Expect = 4.8e-64 Identity = 137/239 (57.32%), Postives = 173/239 (72.38%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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