Cucsa.252170.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAaTCGCCAACACTCCAACCATCTtCAATCCAaCTCCATTTCTCACTGCCAACaGTGCGGCATCTCTCAATCCGCCTGTTGgATCCTCCACAATGTTCGTCACAAAGCCACTTTCCGTCGTCTCTGCACTAATTGTGTCCTCAAGCACAATCTCTCCcGTTTTtGTCCTCTTTGCTTCGATGTTTATGAGGATTCAACTCCTCCGCCGTCTCATCATCGAGTTATGTGCTTCAGATGCCCTTCAATCTCTCATCTCTCTTGCGTTTCCTTTCGATTTTCCTCTACCTTCCTATGCCCTCTCTGCTCTGATCCTCGTTTTGTCTTCTTCGATGGTTTTGACTCCGGCGGCAGCCTTTGTCAATCGGAGTCTACTGTCGCCTTTTTAGCCGGAAAAAATGTTGATGCTAAATCAGGGAAAGCTATTGTCGCTGCGGCTCGTGTGTCCGCTCAATCCATGAGGAGAGCAGCTCTTGACGCTAGGGCTGTTGCGGAGATGAAGATAAAAAACGCCGCGTTTGCGAAGAAACAGGCTACTCTCGCATTGGAACAGCTTGCGTATCTTGTTCTTCAGGAGAAGGATAAAAATGGATATTCTAAAAGTAATGGAGATGCTGTTGATAGTGAGAGGAAGGTTGAAGAAGAAGAATACAAGCTACAGGAGAAAGAT ATGAATCGCCAACACTCCAACCATCTTCAATCCAACTCCATTTCTCACTGCCAACAGTGCGGCATCTCTCAATCCGCCTGTTGGATCCTCCACAATGTTCGTCACAAAGCCACTTTCCGTCGTCTCTGCACTAATTGTGTCCTCAAGCACAATCTCTCCCGTTTTTGTCCTCTTTGCTTCGATGTTTATGAGGATTCAACTCCTCCGCCGTCTCATCATCGAGTTATGTGCTTCAGATGCCCTTCAATCTCTCATCTCTCTTGCGTTTCCTTTCGATTTTCCTCTACCTTCCTATGCCCTCTCTGCTCTGATCCTCGTTTTGTCTTCTTCGATGGTTTTGACTCCGGCGGCAGCCTTTGTCAATCGGAGTCTACTGTCGCCTTTTTAGCCGGAAAAAATGTTGATGCTAAATCAGGGAAAGCTATTGTCGCTGCGGCTCGTGTGTCCGCTCAATCCATGAGGAGAGCAGCTCTTGACGCTAGGGCTGTTGCGGAGATGAAGATAAAAAACGCCGCGTTTGCGAAGAAACAGGCTACTCTCGCATTGGAACAGCTTGCGTATCTTGTTCTTCAGGAGAAGGATAAAAATGGATATTCTAAAAGTAATGGAGATGCTGTTGATAGTGAGAGGAAGGTTGAAGAAGAAGAATACAAGCTACAGGAGAAAGAT ATGAaTCGCCAACACTCCAACCATCTtCAATCCAaCTCCATTTCTCACTGCCAACaGTGCGGCATCTCTCAATCCGCCTGTTGgATCCTCCACAATGTTCGTCACAAAGCCACTTTCCGTCGTCTCTGCACTAATTGTGTCCTCAAGCACAATCTCTCCcGTTTTtGTCCTCTTTGCTTCGATGTTTATGAGGATTCAACTCCTCCGCCGTCTCATCATCGAGTTATGTGCTTCAGATGCCCTTCAATCTCTCATCTCTCTTGCGTTTCCTTTCGATTTTCCTCTACCTTCCTATGCCCTCTCTGCTCTGATCCTCGTTTTGTCTTCTTCGATGGTTTTGACTCCGGCGGCAGCCTTTGTCAATCGGAGTCTACTGTCGCCTTTTTAGCCGGAAAAAATGTTGATGCTAAATCAGGGAAAGCTATTGTCGCTGCGGCTCGTGTGTCCGCTCAATCCATGAGGAGAGCAGCTCTTGACGCTAGGGCTGTTGCGGAGATGAAGATAAAAAACGCCGCGTTTGCGAAGAAACAGGCTACTCTCGCATTGGAACAGCTTGCGTATCTTGTTCTTCAGGAGAAGGATAAAAATGGATATTCTAAAAGTAATGGAGATGCTGTTGATAGTGAGAGGAAGGTTGAAGAAGAAGAATACAAGCTACAGGAGAAAGAT MNRQHSNHLQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYEDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGGSLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATLALEQLAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKD
BLAST of Cucsa.252170.1 vs. TrEMBL
Match: A0A0A0L5G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171130 PE=4 SV=1) HSP 1 Score: 458.4 bits (1178), Expect = 5.1e-126 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. TrEMBL
Match: E5GC39_CUCME (DNA binding protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 428.3 bits (1100), Expect = 5.6e-117 Identity = 212/223 (95.07%), Postives = 216/223 (96.86%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. TrEMBL
Match: A0A067JYW7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19088 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 5.6e-40 Identity = 93/207 (44.93%), Postives = 125/207 (60.39%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. TrEMBL
Match: A0A0D2RGU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G072500 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 6.4e-36 Identity = 86/214 (40.19%), Postives = 130/214 (60.75%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. TrEMBL
Match: A0A061EQG5_THECC (Translation initiation factor IF-2, putative OS=Theobroma cacao GN=TCM_021495 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35 Identity = 84/192 (43.75%), Postives = 122/192 (63.54%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. TAIR10
Match: AT1G09520.1 (AT1G09520.1 LOCATED IN: chloroplast) HSP 1 Score: 120.9 bits (302), Expect = 9.7e-28 Identity = 73/206 (35.44%), Postives = 110/206 (53.40%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. TAIR10
Match: AT3G17460.1 (AT3G17460.1 PHD finger family protein) HSP 1 Score: 90.1 bits (222), Expect = 1.8e-18 Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. NCBI nr
Match: gi|449459790|ref|XP_004147629.1| (PREDICTED: uncharacterized protein LOC101204799 [Cucumis sativus]) HSP 1 Score: 458.4 bits (1178), Expect = 7.3e-126 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. NCBI nr
Match: gi|700202072|gb|KGN57205.1| (hypothetical protein Csa_3G171130 [Cucumis sativus]) HSP 1 Score: 458.4 bits (1178), Expect = 7.3e-126 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. NCBI nr
Match: gi|307136200|gb|ADN34038.1| (DNA binding protein [Cucumis melo subsp. melo]) HSP 1 Score: 428.3 bits (1100), Expect = 8.1e-117 Identity = 212/223 (95.07%), Postives = 216/223 (96.86%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. NCBI nr
Match: gi|659077036|ref|XP_008438997.1| (PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo]) HSP 1 Score: 428.3 bits (1100), Expect = 8.1e-117 Identity = 212/223 (95.07%), Postives = 216/223 (96.86%), Query Frame = 1
BLAST of Cucsa.252170.1 vs. NCBI nr
Match: gi|720048003|ref|XP_010270989.1| (PREDICTED: uncharacterized protein LOC104607149 [Nelumbo nucifera]) HSP 1 Score: 173.7 bits (439), Expect = 3.6e-40 Identity = 91/210 (43.33%), Postives = 132/210 (62.86%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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