Cucsa.247840.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAATGATATAATTATGAATATCAAAGAAAAGTGCAATTGAAATCAAGACGGGAGACCGTGAATATGTGGGTGCATCTTTTACTATTTCTGCAAATTTTAGTACTGCTGGGCCAAGCTACCTTTGCCATTCTTGCAATTGGCTCCACTTTTTAAAATCCGACTCTTTTCATTTCAACCCGCCATCCTACGAAAAGCTTAAGACGCACCACTCGTAACGGTTTCACTCACTGGCGCTGCAATGGCCGCTCCGGAGCTAGAAGTTGCAGTTTTTATCGATACTGATTTCGGCACCCGCCTGGCTGTTGCCGTTCCCCCGGACATCGCCGCCGGAGCTTTAAAGAGTGAGCCCAAAAACTGATTAAAAACAACTTCTCTTCTCTTTTCCTCTTCTTTCACTCCGATTACAAGTGGTTATGTGGGCGTTTTTCTTTTTCTCTCTTTTATCCGAGGAAAACCCCATTTCAGAAGATTGTTCATTCTATTTGAGGATTTTGACTTTTTTATCTTTCTGGGTTTTAAAAGAGCTCTACCAAATCCTTTTAGGTTTTTCTTTATGCCTTGTTCAGATTCTGGGTCCTTCCCCATTTTTCTACATTGATGGCATTTCTGCTGCTTACTTTCCAGTTAAAAGTTGCATTTTTCTGTTCATTATGAATATATGATTGCTTATATTTATTTTTCTCTGTGTTTGAAGATGTGATTTCTGGGTCTTTTTGTTACTTTCCTGTTTCTCGTTTCCATCCTCTTGTTAACAATTTTCGCGAAGCAAACACACTACCAAATGGCCCTGAGGGTCTTGGTTAGGTTCAATGTTTAATGTCTAATGTTCCTGTTTTGAAAACACTTTATTGGTCATTATTTATCGCTCGTTCTTCTGAATGGGATATTTTTCTTATAATTGTATTGTTATAGTTAACTTTCTGTGTTTTCTGTTTTAGTTCCTTTTGTCCTGAGCTTTCCTTTTTGTATTTCCCTAGTCTATTCGTTCAGGCTTCTTTATTAATGTTTTTTTTCTCTCGGGAAAAAAGGCTAATTCTAAGATACGGATCATGGTTTTAATAAGTTTGGATTTGTATGACATTTGGAGTTAGGAAGATTGGCTTTGTAGATATATATATATATGTTGAAATTGTAGAAAAGAAGAAGTTGCAAAATTCAGGATTACTGTACTATGTGTTTGGTTTGTGAGTTTATATGACTTACGAAAGTTTGTATGGACGGTGAGTTTCCTCAACTTTCGCTTGTTTAACAGGAAATTGTATAGCTTAGCTAGTGGACTTAAGAATTAAAAAACCTGTAGCTGTAGTGTGAGATAAGCAATCCAGGTACCTAACATAAGCTTGGCTTCTGAAGTATGAATTACATAAGGTTAACACGTGACTTGTAAGTCAAAATTTTCTTAATGATTCTAAATGTTTAGGATTGATTTTGAAATGGTTAGGTTAGATTTTGGTGGGTTCGACATTTTTTATGTCCTTGTATTCTTTTACTCGATGAAAGCAATTCTTTCTAGATACTAAGGTTCTAAATTCACTTTCTAAATATCTATTTGTCATGTTTAAAATCATTCTGAACACATGTTTGGAGTTATAGAACCAAACATGAAAGTGACTGACTTTGAGTGATTTTGAATGTAACAAAAGTAATTTTAACCATTTCAAAATCATTTTGTAAGGATTCTACTTGATTACTTCACTATTTCTCCCTTACAATGGCAAAAAACAGAGGCTGCCCTCTGTTATCTTTATTTATATATAGCCAAAATGAGTACAGAAATCATAAAGATTCAAGAAAACAAGGAACAATAAAGACAAACCCAGCTTCCTATAGGAAAAAGCTGGATATTCTCCTAGGCTAAGCAGCCACCAACTTCAGGATAAAATAAAACCTACCTCCCCTAGACCTAAAAATCCTATTTATATTCCTTCTCTCATCTTTCTCTTATTTCTGTGCCTAGGCCCCACACGCACGATCTCCTCCTCTTTTTCCTTCTTCATTAATAATTTGTCCAGTTACTTTTCTGCCCCTCCTTTGATATGTATGAATAATTGGAGGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACATTTATCCTTAACATTTTTTCTGCACTTGGGACCCTCAGATGTTTAAGTCGAGGATGAAAGGTTTCATTTGCATGTCATGTGGGCTTATGCCACCTCAGATTCAAAGTTGCGTGCATAATGTCTATAATCTATAATGTATTTACTGTTTTGCCTGCTGATTTCAAACTTTTTCCAGGGGAAGTTGAGAGAGTACATTTTAACTGTTTCCCAAGTATAGGAGAGATCAAGGTGGATGGATTCATGGTGTGTTTGTAGATTGTTTTTGTTTGTTCTCATGGTCAACATCAGATTTAAGGCCATTGTTCTAATTTGTGCCATTTCTATTTCTTTAGGTGAAGCAAAACTCGAACTTCTACCATTTGCCCGATACGTTGCTCACGAAACTCACTTCCCGACTGGAAGTGATGCAGTTTCTTCATGTCAAAGCACGGCCTTTGAATGGGTTTATTGAGCCTTGTATACCCAAAAATGCCGATTGTTCCCCCAACCTAAACTATGTCACTTACCCTACAGAAAGACGAGGTTACTTGGGAACTGCCTGCAAGAGTAAAATCAGAATCAATGGCAAGAAACATACTAGAAAAAGGTTCCAGAGGCAGAATTGCTTATCAAGGCTAGTTGGCCGGGGTATCTTAGCCTGGAATACAAAGAGAAAGAGGAAAATAACTAATAAAAAACAGGTTTTAGAACACATGGAAAAGAATTCTGATACGGAGGGTCTGATAAAAGATGTGAAAAATCACAATGGTTTGATTGGTACATTGTCATACCATTGTGTGTCAAATGACGAAGTGAGGACTACAAAACAAAGGTTGGCAAGCTCCTCATCGGTAGAGGCAGCCACGGACAGTGAGTTGTCCTCTGAAGCCATGTCTGTTTCTAGTATCATAAAAAGATATTTTTCGAGCTATGACAGAGAGAGCAGCATTTCAAACCAATCAAGATATGATATTACTCGAAGTCAGCCAGGAGAGTATTTGAAGATGAAGAATATGGGAAGAGGCCCAAGCTCGTTACCTTTGAAAGTGCCATTTAAACCATGTCCTCAAAAGGATGAGAGATCTAAGCTTGGGAAAAGGCTGGTGATGGCTTCATATAATCTTGGGATTTCTCCTATCGGGGGAAGGCCAGAAATTTCACTTTGTAATGCTAAAGGTAAAAAGTTTCAAGAAATGATGACTTTAGCTAAAAGTTCTTGTTTTGAGATAAGTGACAGTGAAAATTGA CAATGATATAATTATGAATATCAAAGAAAAGTGCAATTGAAATCAAGACGGGAGACCGTGAATATGTGGGTGCATCTTTTACTATTTCTGCAAATTTTAGTACTGCTGGGCCAAGCTACCTTTGCCATTCTTGCAATTGGCTCCACTTTTTAAAATCCGACTCTTTTCATTTCAACCCGCCATCCTACGAAAAGCTTAAGACGCACCACTCGTAACGGTTTCACTCACTGGCGCTGCAATGGCCGCTCCGGAGCTAGAAGTTGCAGTTTTTATCGATACTGATTTCGGCACCCGCCTGGCTGTTGCCGTTCCCCCGGACATCGCCGCCGGAGCTTTAAAGAGGGAAGTTGAGAGAGTACATTTTAACTGTTTCCCAAGTATAGGAGAGATCAAGGTGGATGGATTCATGGTGAAGCAAAACTCGAACTTCTACCATTTGCCCGATACGTTGCTCACGAAACTCACTTCCCGACTGGAAGTGATGCAGTTTCTTCATGTCAAAGCACGGCCTTTGAATGGGTTTATTGAGCCTTGTATACCCAAAAATGCCGATTGTTCCCCCAACCTAAACTATGTCACTTACCCTACAGAAAGACGAGGTTACTTGGGAACTGCCTGCAAGAGTAAAATCAGAATCAATGGCAAGAAACATACTAGAAAAAGGTTCCAGAGGCAGAATTGCTTATCAAGGCTAGTTGGCCGGGGTATCTTAGCCTGGAATACAAAGAGAAAGAGGAAAATAACTAATAAAAAACAGGTTTTAGAACACATGGAAAAGAATTCTGATACGGAGGGTCTGATAAAAGATGTGAAAAATCACAATGGTTTGATTGGTACATTGTCATACCATTGTGTGTCAAATGACGAAGTGAGGACTACAAAACAAAGGTTGGCAAGCTCCTCATCGGTAGAGGCAGCCACGGACAGTGAGTTGTCCTCTGAAGCCATGTCTGTTTCTAGTATCATAAAAAGATATTTTTCGAGCTATGACAGAGAGAGCAGCATTTCAAACCAATCAAGATATGATATTACTCGAAGTCAGCCAGGAGAGTATTTGAAGATGAAGAATATGGGAAGAGGCCCAAGCTCGTTACCTTTGAAAGTGCCATTTAAACCATGTCCTCAAAAGGATGAGAGATCTAAGCTTGGGAAAAGGCTGGTGATGGCTTCATATAATCTTGGGATTTCTCCTATCGGGGGAAGGCCAGAAATTTCACTTTGTAATGCTAAAGGTAAAAAGTTTCAAGAAATGATGACTTTAGCTAAAAGTTCTTGTTTTGAGATAAGTGACAGTGAAAATTGA ATGGCCGCTCCGGAGCTAGAAGTTGCAGTTTTTATCGATACTGATTTCGGCACCCGCCTGGCTGTTGCCGTTCCCCCGGACATCGCCGCCGGAGCTTTAAAGAGGGAAGTTGAGAGAGTACATTTTAACTGTTTCCCAAGTATAGGAGAGATCAAGGTGGATGGATTCATGGTGAAGCAAAACTCGAACTTCTACCATTTGCCCGATACGTTGCTCACGAAACTCACTTCCCGACTGGAAGTGATGCAGTTTCTTCATGTCAAAGCACGGCCTTTGAATGGGTTTATTGAGCCTTGTATACCCAAAAATGCCGATTGTTCCCCCAACCTAAACTATGTCACTTACCCTACAGAAAGACGAGGTTACTTGGGAACTGCCTGCAAGAGTAAAATCAGAATCAATGGCAAGAAACATACTAGAAAAAGGTTCCAGAGGCAGAATTGCTTATCAAGGCTAGTTGGCCGGGGTATCTTAGCCTGGAATACAAAGAGAAAGAGGAAAATAACTAATAAAAAACAGGTTTTAGAACACATGGAAAAGAATTCTGATACGGAGGGTCTGATAAAAGATGTGAAAAATCACAATGGTTTGATTGGTACATTGTCATACCATTGTGTGTCAAATGACGAAGTGAGGACTACAAAACAAAGGTTGGCAAGCTCCTCATCGGTAGAGGCAGCCACGGACAGTGAGTTGTCCTCTGAAGCCATGTCTGTTTCTAGTATCATAAAAAGATATTTTTCGAGCTATGACAGAGAGAGCAGCATTTCAAACCAATCAAGATATGATATTACTCGAAGTCAGCCAGGAGAGTATTTGAAGATGAAGAATATGGGAAGAGGCCCAAGCTCGTTACCTTTGAAAGTGCCATTTAAACCATGTCCTCAAAAGGATGAGAGATCTAAGCTTGGGAAAAGGCTGGTGATGGCTTCATATAATCTTGGGATTTCTCCTATCGGGGGAAGGCCAGAAATTTCACTTTGTAATGCTAAAGGTAAAAAGTTTCAAGAAATGATGACTTTAGCTAAAAGTTCTTGTTTTGAGATAAGTGACAGTGAAAATTGA MAAPELEVAVFIDTDFGTRLAVAVPPDIAAGALKREVERVHFNCFPSIGEIKVDGFMVKQNSNFYHLPDTLLTKLTSRLEVMQFLHVKARPLNGFIEPCIPKNADCSPNLNYVTYPTERRGYLGTACKSKIRINGKKHTRKRFQRQNCLSRLVGRGILAWNTKRKRKITNKKQVLEHMEKNSDTEGLIKDVKNHNGLIGTLSYHCVSNDEVRTTKQRLASSSSVEAATDSELSSEAMSVSSIIKRYFSSYDRESSISNQSRYDITRSQPGEYLKMKNMGRGPSSLPLKVPFKPCPQKDERSKLGKRLVMASYNLGISPIGGRPEISLCNAKGKKFQEMMTLAKSSCFEISDSEN*
BLAST of Cucsa.247840.1 vs. TrEMBL
Match: A0A0A0K319_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G122360 PE=4 SV=1) HSP 1 Score: 641.3 bits (1653), Expect = 6.7e-181 Identity = 318/319 (99.69%), Postives = 318/319 (99.69%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. TrEMBL
Match: D7UAI5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00660 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 5.2e-32 Identity = 126/383 (32.90%), Postives = 185/383 (48.30%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. TrEMBL
Match: M5W0D6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014770mg PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 4.3e-26 Identity = 101/338 (29.88%), Postives = 170/338 (50.30%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. TrEMBL
Match: W9REF4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007792 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25 Identity = 110/383 (28.72%), Postives = 171/383 (44.65%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. TrEMBL
Match: K7LBV9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G051600 PE=4 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23 Identity = 109/406 (26.85%), Postives = 176/406 (43.35%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. TAIR10
Match: AT1G55860.1 (AT1G55860.1 ubiquitin-protein ligase 1) HSP 1 Score: 76.3 bits (186), Expect = 4.4e-14 Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. TAIR10
Match: AT4G00920.1 (AT4G00920.1 COP1-interacting protein-related) HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07 Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. TAIR10
Match: AT4G00930.1 (AT4G00930.1 COP1-interacting protein 4.1) HSP 1 Score: 51.6 bits (122), Expect = 1.2e-06 Identity = 29/89 (32.58%), Postives = 47/89 (52.81%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. TAIR10
Match: AT2G01800.1 (AT2G01800.1 COP1-interacting protein-related) HSP 1 Score: 51.2 bits (121), Expect = 1.5e-06 Identity = 24/65 (36.92%), Postives = 34/65 (52.31%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. TAIR10
Match: AT1G30060.1 (AT1G30060.1 COP1-interacting protein-related) HSP 1 Score: 50.4 bits (119), Expect = 2.6e-06 Identity = 22/65 (33.85%), Postives = 34/65 (52.31%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. NCBI nr
Match: gi|778725386|ref|XP_004151358.2| (PREDICTED: uncharacterized protein LOC101220553 [Cucumis sativus]) HSP 1 Score: 641.3 bits (1653), Expect = 9.7e-181 Identity = 318/319 (99.69%), Postives = 318/319 (99.69%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. NCBI nr
Match: gi|659126100|ref|XP_008463010.1| (PREDICTED: uncharacterized protein LOC103501255 [Cucumis melo]) HSP 1 Score: 636.7 bits (1641), Expect = 2.4e-179 Identity = 323/355 (90.99%), Postives = 333/355 (93.80%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. NCBI nr
Match: gi|731433296|ref|XP_010644590.1| (PREDICTED: uncharacterized protein LOC104877623 isoform X2 [Vitis vinifera]) HSP 1 Score: 146.7 bits (369), Expect = 7.5e-32 Identity = 126/383 (32.90%), Postives = 185/383 (48.30%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. NCBI nr
Match: gi|828290762|ref|XP_012573716.1| (PREDICTED: uncharacterized protein LOC101500691 [Cicer arietinum]) HSP 1 Score: 138.3 bits (347), Expect = 2.7e-29 Identity = 121/394 (30.71%), Postives = 180/394 (45.69%), Query Frame = 1
BLAST of Cucsa.247840.1 vs. NCBI nr
Match: gi|731433294|ref|XP_010644589.1| (PREDICTED: uncharacterized protein LOC104877623 isoform X1 [Vitis vinifera]) HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28 Identity = 125/399 (31.33%), Postives = 185/399 (46.37%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
|