Cucsa.241900.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.241900.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Dof zinc finger protein
Location	scaffold02047 : 1755766 .. 1756533 (-)
Sequence length	636

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGGATGGAAACCTATGGTGGAAATATCACCAAATTGTCCAAGGTGTGGCTCTTCCAATACTAAGTTTTGTTATTACAACAACTATAGCCTTACCCAGCCTCGCTACTTTTGCAAAGGCTGTCGTCGCTATTGGACCAAAGGCGGTTCCCTCCGTAATGTTCCGGTCGGTGGTGGTTGTCGGAAGAATCGACGTTCGCCCAAGCCCTTAACCCTAACCCCATCTTCCTCAAACCCTAAATTTCACCACACTAACGATAGTGATTACCAACGATACCACTGTGGTCTCTCCGACTCCGATGTATCACCAACCATCGATTTGGCAGTCGTCTACGCCAATTTTGTGAACCAGAAACCAGACACGCCTGAAACTATACCAACCTCGAACGCAGCTGGCCACTTTCCTGTTTCCGTTCAGAGTAGGGTGGTTGGATGTGGGAATTTTTGTGAGTTTTCCATGCAGGAATGTGGATTGGGGGCCAATGATTATCAAGTGGGAGGTGGTTGCTTTGGGTTAGAGGAGAGTAGTAATAATAATGAAAGTCAAGTGGCGGGGCGTGAGCTTCAATTGCCGCCGTTGCCGGGGGAGGACATGGTGGAAGCATGGGGAAATTCTATGATAATGGTGAATAATCATCATCGTTTGCAACCAACAAGAGTAGAAATGTTCGAAGACCCAAATTTGCTGAGTGGTAATTGGAGCCCTATTGATCTGTCTAATTATGATACATTCTCAAAAGGCTTAACAAATATACATATATAA

mRNA sequence

ATGGAGAGAGGATGGAAACCTATGGTGGAAATATCACCAAATTGTCCAAGGTGTGGCTCTTCCAATACTAAGTTTTGTTATTACAACAACTATAGCCTTACCCAGCCTCGCTACTTTTGCAAAGGCTGTCGTCGCTATTGGACCAAAGGCGGTTCCCTCCGTAATGTTCCGGTCGGTGGTGGTTGTCGGAAGAATCGACTCGTCTACGCCAATTTTGTGAACCAGAAACCAGACACGCCTGAAACTATACCAACCTCGAACGCAGCTGGCCACTTTCCTGTTTCCGTTCAGAGTAGGGTGGTTGGATGTGGGAATTTTTGTGAGTTTTCCATGCAGGAATGTGGATTGGGGGCCAATGATTATCAAGTGGGAGGTGGTTGCTTTGGGTTAGAGGAGAGTAGTAATAATAATGAAAGTCAAGTGGCGGGGCGTGAGCTTCAATTGCCGCCGTTGCCGGGGGAGGACATGGTGGAAGCATGGGGAAATTCTATGATAATGGTGAATAATCATCATCGTTTGCAACCAACAAGAGTAGAAATGTTCGAAGACCCAAATTTGCTGAGTGGTAATTGGAGCCCTATTGATCTGTCTAATTATGATACATTCTCAAAAGGCTTAACAAATATACATATATAA

Coding sequence (CDS)

ATGGAGAGAGGATGGAAACCTATGGTGGAAATATCACCAAATTGTCCAAGGTGTGGCTCTTCCAATACTAAGTTTTGTTATTACAACAACTATAGCCTTACCCAGCCTCGCTACTTTTGCAAAGGCTGTCGTCGCTATTGGACCAAAGGCGGTTCCCTCCGTAATGTTCCGGTCGGTGGTGGTTGTCGGAAGAATCGACTCGTCTACGCCAATTTTGTGAACCAGAAACCAGACACGCCTGAAACTATACCAACCTCGAACGCAGCTGGCCACTTTCCTGTTTCCGTTCAGAGTAGGGTGGTTGGATGTGGGAATTTTTGTGAGTTTTCCATGCAGGAATGTGGATTGGGGGCCAATGATTATCAAGTGGGAGGTGGTTGCTTTGGGTTAGAGGAGAGTAGTAATAATAATGAAAGTCAAGTGGCGGGGCGTGAGCTTCAATTGCCGCCGTTGCCGGGGGAGGACATGGTGGAAGCATGGGGAAATTCTATGATAATGGTGAATAATCATCATCGTTTGCAACCAACAAGAGTAGAAATGTTCGAAGACCCAAATTTGCTGAGTGGTAATTGGAGCCCTATTGATCTGTCTAATTATGATACATTCTCAAAAGGCTTAACAAATATACATATATAA

Protein sequence

MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRLVYANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQVGGGCFGLEESSNNNESQVAGRELQLPPLPGEDMVEAWGNSMIMVNNHHRLQPTRVEMFEDPNLLSGNWSPIDLSNYDTFSKGLTNIHI*

Homology

[Close]

BLAST of Cucsa.241900.1 vs. Swiss-Prot
Match: DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-35
Identity = 94/235 (40.00%), Postives = 127/235 (54.04%), Query Frame = 1


Query: 5   WKPMV----EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 64
           W+P      EI+P+CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 65  GCRKNRLVYANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFC-----EFSMQE-C 124
           GCRK+R   ++  N    T  T  + N  G  P S+   +V   NF      E  +QE C
Sbjct: 73  GCRKSRRPKSSSGN-NTKTSLTANSGNPGGGSP-SIDLALV-YANFLNPKPDESILQENC 132

Query: 125 GLGANDYQVGG-------GCFGLEESSNNNESQVAGRE--------LQLPPLPGEDMVE- 184
            L   D+ V           + ++ +  +++  +   E          LPP PGE+++  
Sbjct: 133 DLATTDFLVDNPTGTSMDPSWSMDINDGHHDHYINPVEHIVEECGYNGLPPFPGEELLSL 192

Query: 185 ----AWGNSMIMVNNHHRLQPTRVEMFEDP------------NLLSGNWSPIDLS 198
                W +++++ +NH  +  T V+   +P            NLL G+WSP D +
Sbjct: 193 DTNGVWSDALLIGHNHVDVGVTPVQAVHEPVVHFADESNDSTNLLFGSWSPFDFT 244

[Close]

BLAST of Cucsa.241900.1 vs. Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 9.6e-27
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 2   ERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGG 61
           ER  +P  + + NCPRC S+NTKFCYYNNYSLTQPRYFCKGCRRYWT+GGSLRN+PVGGG
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 62  CRKNRLVY---ANFVNQKPDTPETIPTSNAAGH----FPVSVQSRVVGCGNFCEFSMQEC 118
            RKN+  +   ++  N   D+ +     + + H      +S Q        F E + Q+ 
Sbjct: 102 SRKNKRSHSSSSDISNNHSDSTQPATKKHLSDHHHHLMSMSQQGLTGQNPKFLETTQQDL 161

[Close]

BLAST of Cucsa.241900.1 vs. Swiss-Prot
Match: DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 56/104 (53.85%), Postives = 66/104 (63.46%), Query Frame = 1


Query: 10  EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRLVY 69
           E++  CPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTKGG+LRN+PVGGGCRKN+   
Sbjct: 52  ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 111

Query: 70  ANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQE 114
           ++       TPE           P S   +V     F  +S  E
Sbjct: 112 SSAARSLRTTPE-----------PASHDGKVFSAAGFNGYSNNE 144

[Close]

BLAST of Cucsa.241900.1 vs. Swiss-Prot
Match: DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.1e-26
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 12 SPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRK 65
          +P CPRC SSNTKFCYYNNYSL+QPRYFCKGCRRYWTKGGSLRN+PVGGGCRK
Sbjct: 37 APACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRK 89

[Close]

BLAST of Cucsa.241900.1 vs. Swiss-Prot
Match: DOF11_ARATH (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 8.1e-26
Identity = 65/137 (47.45%), Postives = 81/137 (59.12%), Query Frame = 1


Query: 15  CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRLVYANFVN 74
           CPRC SSNTKFCYYNNY+LTQPR+FCKGCRRYWT+GG+LRNVPVGGGCR+N     N  N
Sbjct: 79  CPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKN-GN 138

Query: 75  QKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQVGGGCFGLEESS 134
            K  +  +  +S+     P S Q R     +   FS     L     Q+GG    L  ++
Sbjct: 139 LKSSSSSSKQSSSVNAQSPSSGQLRT---NHQFPFSPTLYNL----TQLGGIGLNLAATN 198

Query: 135 NNNESQVAGRELQLPPL 152
            NN++   G  L +  L
Sbjct: 199 GNNQAHQIGSSLMMSDL 207

[Close]

BLAST of Cucsa.241900.1 vs. TrEMBL
Match: A0A0A0LGT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782640 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.9e-80
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 1


Query: 67  LVYANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQVGGG 126
           +VYANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQVGGG
Sbjct: 111 VVYANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQVGGG 170

Query: 127 CFGLEESSNNNESQVAGRELQLPPLPGEDMVEAWGNSMIMVNNHHRLQPTRVEMFEDPNL 186
           CFGLEESSNNNESQVA RELQLPPLPGEDMVEAWGNSMIMVNNHHRLQPTRVEMFEDPNL
Sbjct: 171 CFGLEESSNNNESQVAARELQLPPLPGEDMVEAWGNSMIMVNNHHRLQPTRVEMFEDPNL 230

Query: 187 LSGNWSPIDLSNYDTFSKGLTNIHI 212
           LSGNWSPIDLSNYDTFSKGLTNIHI
Sbjct: 231 LSGNWSPIDLSNYDTFSKGLTNIHI 255

[Close]

BLAST of Cucsa.241900.1 vs. TrEMBL
Match: A0A0A0LGT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782640 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.7e-35
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60
          MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG
Sbjct: 1  MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60

Query: 61 GCRKNR 67
          GCRKNR
Sbjct: 61 GCRKNR 66

HSP 2 Score: 180.6 bits (457), Expect = 1.9e-42
Identity = 107/243 (44.03%), Postives = 133/243 (54.73%), Query Frame = 1


Query: 1   MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60
           ME GWK   EISP+CPRCGSSNTKFCY+NNYSLTQPRYFCKGCRRYWT+GGSLRNVPVGG
Sbjct: 1   METGWKEHAEISPSCPRCGSSNTKFCYHNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGG 60

Query: 61  GCRKNR--------------------------LVYANFVNQKPDTPETIPTSNAAGHFPV 120
           GCRKNR                          LVYA F+N + D+ +    +  AG   +
Sbjct: 61  GCRKNRRGKSMRLSTDSSSSSMIPDGSHIDLALVYAKFLNPQQDSKK----NGLAGSLTI 120

Query: 121 SVQSRVVGCGNFCEFSMQECGLGANDYQVGGGCFGLEESSNNNESQVAGRE--------L 180
           S  S  V              L  ND+ +    + L+ +  + + Q   ++         
Sbjct: 121 SDFSTGV-------------PLSDNDHLM--YYYSLDSAHKHQDHQDRTQQCTSHETSSF 180

Query: 181 QLPPLPGEDMVE---AWGNSMIMVNNHHRLQPTRV--EMFEDPNLLSGNWSPIDLSNYDT 205
            LPPLPG+D V     W NS +M N+   + P  V     +DPNLL GNWSP D+S+ DT
Sbjct: 181 HLPPLPGQDTVSQDILWSNSHMMDNHSLEMSPQPVLGPDTQDPNLLFGNWSPFDMSSDDT 224

[Close]

BLAST of Cucsa.241900.1 vs. TrEMBL
Match: V7D0D2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G196100g PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.8e-39
Identity = 110/269 (40.89%), Postives = 136/269 (50.56%), Query Frame = 1


Query: 1   MERGWKP-MVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVG 60
           MERGWK   VEISPNCPRC  SNTKFCYYNNYS TQPRYFCKGCRRYWTKGGSLRNVP+G
Sbjct: 1   MERGWKANSVEISPNCPRCSCSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIG 60

Query: 61  GGCRKNRL------------------------------------VYANFVNQKPDTPETI 120
           GGCRK+R                                     VYA+F+N KPD  +T 
Sbjct: 61  GGCRKSRRGRYNKTLRQANSPVGHSDLRPSSSVMSDGPNIDIAQVYASFLNVKPDQVQTF 120

Query: 121 PTSNAA---------GHFPVSVQSRVVGCGNFCE----------FSMQECGLGANDYQVG 180
            + +           GH  +S +  + G  +F E            M  CGL +      
Sbjct: 121 CSPSPEYSSIINTDFGHSALSEEHGLTGRLHFHEQPTESYFSEDIGMYFCGLNSIQKH-- 180

Query: 181 GGCFGLEESSNNNESQVAGRELQLPPLPGEDMVEA-----WGNSMIMVNNHHRLQPTRVE 204
                 +E S+++++ V     +LPPLPGED   +     W NS +MV+  H LQ T+  
Sbjct: 181 ------KEYSSSHDTTVTKTNFELPPLPGEDAETSHGNVLWSNSEMMVD--HGLQATQWP 240

[Close]

BLAST of Cucsa.241900.1 vs. TrEMBL
Match: A0A0D2MF28_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G234700 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-38
Identity = 106/250 (42.40%), Postives = 130/250 (52.00%), Query Frame = 1


Query: 1   MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60
           MERGWKP +EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG
Sbjct: 1   MERGWKPRMEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60

Query: 61  GCRKNRLVYANFVNQKPDTPETIPTS-NAAGHFPVSVQSR---VVGCGNFCEFSMQECGL 120
           GCRKNR      +    D  +T   S ++  H   S +S     +  G+  + ++     
Sbjct: 61  GCRKNR--RGKSLRLPTDGAQTKSLSCDSFRHSYASTESNSSSSMSDGSHIDLALVYANF 120

Query: 121 GANDYQVGGGCF-----------GLEESSNNNESQVAGRELQ------------------ 180
            +N        F            LE S   N +  +  +L                   
Sbjct: 121 LSNQQPENKSGFVVPELRTEFDPSLEFSRILNTNMASSIQLPEENGLDLSTENHLSNNGQ 180

Query: 181 ---------LPPLPGEDMVEAWGNSMIMVNNHHRLQPTRVEMFE----DPNLLSGNWSPI 205
                    LPPLPG+D+   W NS   ++    LQ T+  + E    DPN L GNW+P 
Sbjct: 181 IYCSGGNHGLPPLPGDDL--PWPNSQSTMS--PSLQATQEPVLEPETHDPNQLFGNWNPF 240

[Close]

BLAST of Cucsa.241900.1 vs. TrEMBL
Match: A0A0S3RZC2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G353900 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.1e-36
Identity = 107/271 (39.48%), Postives = 135/271 (49.82%), Query Frame = 1


Query: 1   MERGWKP-MVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVG 60
           MERGWK   VEISPNCPRCGSSNTKFCYYNNYS TQPRYFCKGCRRYWTKGGSLRNVP+G
Sbjct: 1   MERGWKANSVEISPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIG 60

Query: 61  GGCRKNRL-------------------------------------VYANFVNQKPDTPET 120
           GGCRK+R                                      VYA+F+N KPD  +T
Sbjct: 61  GGCRKSRRGKYNKALRQAHGPVGHSDDLRPSSSVVSDGPNIDLAQVYASFLNVKPDQVQT 120

Query: 121 IPTSNAA---------GHFPVSVQSR-VVGCGNFCE----------FSMQECGLGANDYQ 180
           + + +           GH  +S +   + G  +F E            M  CGL +    
Sbjct: 121 VCSPSPEYSSIVNTDFGHSVLSEEHHGLTGRLHFHEQPRESHFGEDIEMYFCGLNSIQKH 180

Query: 181 VGGGCFGLEESSNNNESQVAGRELQLPPLPGEDMVEA-----WGNSMIMVNNHHRLQPTR 204
                   ++ S+++++ V     +LPPLPGE    +     W NS +MV+  H LQ T+
Sbjct: 181 --------QKYSSSHDTTVTKTNFELPPLPGEVAETSHGNVLWSNSEMMVD--HALQATQ 240

[Close]

BLAST of Cucsa.241900.1 vs. TAIR10
Match: AT3G52440.1 (AT3G52440.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 94/235 (40.00%), Postives = 127/235 (54.04%), Query Frame = 1


Query: 5   WKPMV----EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 64
           W+P      EI+P+CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 65  GCRKNRLVYANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFC-----EFSMQE-C 124
           GCRK+R   ++  N    T  T  + N  G  P S+   +V   NF      E  +QE C
Sbjct: 73  GCRKSRRPKSSSGN-NTKTSLTANSGNPGGGSP-SIDLALV-YANFLNPKPDESILQENC 132

Query: 125 GLGANDYQVGG-------GCFGLEESSNNNESQVAGRE--------LQLPPLPGEDMVE- 184
            L   D+ V           + ++ +  +++  +   E          LPP PGE+++  
Sbjct: 133 DLATTDFLVDNPTGTSMDPSWSMDINDGHHDHYINPVEHIVEECGYNGLPPFPGEELLSL 192

Query: 185 ----AWGNSMIMVNNHHRLQPTRVEMFEDP------------NLLSGNWSPIDLS 198
                W +++++ +NH  +  T V+   +P            NLL G+WSP D +
Sbjct: 193 DTNGVWSDALLIGHNHVDVGVTPVQAVHEPVVHFADESNDSTNLLFGSWSPFDFT 244

[Close]

BLAST of Cucsa.241900.1 vs. TAIR10
Match: AT4G24060.1 (AT4G24060.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 121.7 bits (304), Expect = 5.4e-28
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 2   ERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGG 61
           ER  +P  + + NCPRC S+NTKFCYYNNYSLTQPRYFCKGCRRYWT+GGSLRN+PVGGG
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 62  CRKNRLVY---ANFVNQKPDTPETIPTSNAAGH----FPVSVQSRVVGCGNFCEFSMQEC 118
            RKN+  +   ++  N   D+ +     + + H      +S Q        F E + Q+ 
Sbjct: 102 SRKNKRSHSSSSDISNNHSDSTQPATKKHLSDHHHHLMSMSQQGLTGQNPKFLETTQQDL 161

[Close]

BLAST of Cucsa.241900.1 vs. TAIR10
Match: AT5G60200.1 (AT5G60200.1 TARGET OF MONOPTEROS 6)

HSP 1 Score: 120.9 bits (302), Expect = 9.2e-28
Identity = 56/104 (53.85%), Postives = 66/104 (63.46%), Query Frame = 1


Query: 10  EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRLVY 69
           E++  CPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTKGG+LRN+PVGGGCRKN+   
Sbjct: 52  ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 111

Query: 70  ANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQE 114
           ++       TPE           P S   +V     F  +S  E
Sbjct: 112 SSAARSLRTTPE-----------PASHDGKVFSAAGFNGYSNNE 144

[Close]

BLAST of Cucsa.241900.1 vs. TAIR10
Match: AT1G21340.1 (AT1G21340.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 118.6 bits (296), Expect = 4.6e-27
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 12 SPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRK 65
          +P CPRC SSNTKFCYYNNYSL+QPRYFCKGCRRYWTKGGSLRN+PVGGGCRK
Sbjct: 37 APACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRK 89

[Close]

BLAST of Cucsa.241900.1 vs. TAIR10
Match: AT1G07640.3 (AT1G07640.3 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 118.6 bits (296), Expect = 4.6e-27
Identity = 65/137 (47.45%), Postives = 81/137 (59.12%), Query Frame = 1


Query: 15  CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRLVYANFVN 74
           CPRC SSNTKFCYYNNY+LTQPR+FCKGCRRYWT+GG+LRNVPVGGGCR+N     N  N
Sbjct: 87  CPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKN-GN 146

Query: 75  QKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQVGGGCFGLEESS 134
            K  +  +  +S+     P S Q R     +   FS     L     Q+GG    L  ++
Sbjct: 147 LKSSSSSSKQSSSVNAQSPSSGQLRT---NHQFPFSPTLYNL----TQLGGIGLNLAATN 206

Query: 135 NNNESQVAGRELQLPPL 152
            NN++   G  L +  L
Sbjct: 207 GNNQAHQIGSSLMMSDL 215

[Close]

BLAST of Cucsa.241900.1 vs. NCBI nr
Match: gi|449437870|ref|XP_004136713.1| (PREDICTED: dof zinc finger protein DOF3.5 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.3e-79
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 1


Query: 67  LVYANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQVGGG 126
           +VYANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQVGGG
Sbjct: 111 VVYANFVNQKPDTPETIPTSNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQVGGG 170

Query: 127 CFGLEESSNNNESQVAGRELQLPPLPGEDMVEAWGNSMIMVNNHHRLQPTRVEMFEDPNL 186
           CFGLEESSNNNESQVA RELQLPPLPGEDMVEAWGNSMIMVNNHHRLQPTRVEMFEDPNL
Sbjct: 171 CFGLEESSNNNESQVAARELQLPPLPGEDMVEAWGNSMIMVNNHHRLQPTRVEMFEDPNL 230

Query: 187 LSGNWSPIDLSNYDTFSKGLTNIHI 212
           LSGNWSPIDLSNYDTFSKGLTNIHI
Sbjct: 231 LSGNWSPIDLSNYDTFSKGLTNIHI 255

[Close]

BLAST of Cucsa.241900.1 vs. NCBI nr
Match: gi|449437870|ref|XP_004136713.1| (PREDICTED: dof zinc finger protein DOF3.5 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60
          MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG
Sbjct: 1  MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60

Query: 61 GCRKNR 67
          GCRKNR
Sbjct: 61 GCRKNR 66

HSP 2 Score: 275.8 bits (704), Expect = 6.4e-71
Identity = 134/154 (87.01%), Postives = 141/154 (91.56%), Query Frame = 1


Query: 67  LVYANFVNQKPDTPETIPT----SNAAGHFPVSVQSRVVGCGNFCEFSMQECGLGANDYQ 126
           +VYANFVNQKPDT ETIPT    SNAAGHFPVS +S VVGCGNFCEFSMQECGLGA+DYQ
Sbjct: 111 VVYANFVNQKPDTRETIPTTNTTSNAAGHFPVSGESGVVGCGNFCEFSMQECGLGASDYQ 170

Query: 127 VGGGCFGLEESSNNNESQV-----AGRELQLPPLPGEDMVEAWGNSMIMVNNHHRLQPTR 186
           VGGGCFGLEES+NNNE+QV     A RELQLPPLPGED+VEAWGNSMIMVNNHHRLQPTR
Sbjct: 171 VGGGCFGLEESNNNNENQVDNIEVAARELQLPPLPGEDVVEAWGNSMIMVNNHHRLQPTR 230

Query: 187 VEMFEDPNLLSGNWSPIDLSNYDTFSKGLTNIHI 212
           VEMFEDPNLLSGNWSPIDLSNYDTFSKGLTN+HI
Sbjct: 231 VEMFEDPNLLSGNWSPIDLSNYDTFSKGLTNMHI 264

[Close]

BLAST of Cucsa.241900.1 vs. NCBI nr
Match: gi|659085778|ref|XP_008443597.1| (PREDICTED: dof zinc finger protein DOF3.5 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60
          MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG
Sbjct: 1  MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60

Query: 61 GCRKNR 67
          GCRKNR
Sbjct: 61 GCRKNR 66

HSP 2 Score: 180.6 bits (457), Expect = 2.8e-42
Identity = 107/243 (44.03%), Postives = 133/243 (54.73%), Query Frame = 1


Query: 1   MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60
           ME GWK   EISP+CPRCGSSNTKFCY+NNYSLTQPRYFCKGCRRYWT+GGSLRNVPVGG
Sbjct: 1   METGWKEHAEISPSCPRCGSSNTKFCYHNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGG 60

Query: 61  GCRKNR--------------------------LVYANFVNQKPDTPETIPTSNAAGHFPV 120
           GCRKNR                          LVYA F+N + D+ +    +  AG   +
Sbjct: 61  GCRKNRRGKSMRLSTDSSSSSMIPDGSHIDLALVYAKFLNPQQDSKK----NGLAGSLTI 120

Query: 121 SVQSRVVGCGNFCEFSMQECGLGANDYQVGGGCFGLEESSNNNESQVAGRE--------L 180
           S  S  V              L  ND+ +    + L+ +  + + Q   ++         
Sbjct: 121 SDFSTGV-------------PLSDNDHLM--YYYSLDSAHKHQDHQDRTQQCTSHETSSF 180

Query: 181 QLPPLPGEDMVE---AWGNSMIMVNNHHRLQPTRV--EMFEDPNLLSGNWSPIDLSNYDT 205
            LPPLPG+D V     W NS +M N+   + P  V     +DPNLL GNWSP D+S+ DT
Sbjct: 181 HLPPLPGQDTVSQDILWSNSHMMDNHSLEMSPQPVLGPDTQDPNLLFGNWSPFDMSSDDT 224

[Close]

BLAST of Cucsa.241900.1 vs. NCBI nr
Match: gi|593799877|ref|XP_007162976.1| (hypothetical protein PHAVU_001G196100g [Phaseolus vulgaris])

HSP 1 Score: 169.1 bits (427), Expect = 8.4e-39
Identity = 110/269 (40.89%), Postives = 136/269 (50.56%), Query Frame = 1


Query: 1   MERGWKP-MVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVG 60
           MERGWK   VEISPNCPRC  SNTKFCYYNNYS TQPRYFCKGCRRYWTKGGSLRNVP+G
Sbjct: 1   MERGWKANSVEISPNCPRCSCSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIG 60

Query: 61  GGCRKNRL------------------------------------VYANFVNQKPDTPETI 120
           GGCRK+R                                     VYA+F+N KPD  +T 
Sbjct: 61  GGCRKSRRGRYNKTLRQANSPVGHSDLRPSSSVMSDGPNIDIAQVYASFLNVKPDQVQTF 120

Query: 121 PTSNAA---------GHFPVSVQSRVVGCGNFCE----------FSMQECGLGANDYQVG 180
            + +           GH  +S +  + G  +F E            M  CGL +      
Sbjct: 121 CSPSPEYSSIINTDFGHSALSEEHGLTGRLHFHEQPTESYFSEDIGMYFCGLNSIQKH-- 180

Query: 181 GGCFGLEESSNNNESQVAGRELQLPPLPGEDMVEA-----WGNSMIMVNNHHRLQPTRVE 204
                 +E S+++++ V     +LPPLPGED   +     W NS +MV+  H LQ T+  
Sbjct: 181 ------KEYSSSHDTTVTKTNFELPPLPGEDAETSHGNVLWSNSEMMVD--HGLQATQWP 240

[Close]

BLAST of Cucsa.241900.1 vs. NCBI nr
Match: gi|823136705|ref|XP_012468121.1| (PREDICTED: dof zinc finger protein DOF3.5-like [Gossypium raimondii])

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 106/250 (42.40%), Postives = 130/250 (52.00%), Query Frame = 1


Query: 1   MERGWKPMVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60
           MERGWKP +EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG
Sbjct: 1   MERGWKPRMEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 60

Query: 61  GCRKNRLVYANFVNQKPDTPETIPTS-NAAGHFPVSVQSR---VVGCGNFCEFSMQECGL 120
           GCRKNR      +    D  +T   S ++  H   S +S     +  G+  + ++     
Sbjct: 61  GCRKNR--RGKSLRLPTDGAQTKSLSCDSFRHSYASTESNSSSSMSDGSHIDLALVYANF 120

Query: 121 GANDYQVGGGCF-----------GLEESSNNNESQVAGRELQ------------------ 180
            +N        F            LE S   N +  +  +L                   
Sbjct: 121 LSNQQPENKSGFVVPELRTEFDPSLEFSRILNTNMASSIQLPEENGLDLSTENHLSNNGQ 180

Query: 181 ---------LPPLPGEDMVEAWGNSMIMVNNHHRLQPTRVEMFE----DPNLLSGNWSPI 205
                    LPPLPG+D+   W NS   ++    LQ T+  + E    DPN L GNW+P 
Sbjct: 181 IYCSGGNHGLPPLPGDDL--PWPNSQSTMS--PSLQATQEPVLEPETHDPNQLFGNWNPF 240

The following BLAST results are available for this feature:

BLAST of Cucsa.241900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DOF35_ARATH	1.9e-35	40.00	Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=3 SV=1	[more]
DOF46_ARATH	9.6e-27	48.78	Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2	[more]
DOF53_ARATH	1.6e-26	53.85	Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1	[more]
DOF12_ARATH	8.1e-26	90.57	Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1	[more]
DOF11_ARATH	8.1e-26	47.45	Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1 PE=1 SV=2	[more]

BLAST of Cucsa.241900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGT7_CUCSA	8.9e-80	98.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782640 PE=4 SV=1	[more]
A0A0A0LGT7_CUCSA	8.7e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782640 PE=4 SV=1	[more]
V7D0D2_PHAVU	5.8e-39	40.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G196100g PE=4 SV=1	[more]
A0A0D2MF28_GOSRA	1.3e-38	42.40	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G234700 PE=4 SV=1	[more]
A0A0S3RZC2_PHAAN	6.1e-36	39.48	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G353900 PE=...	[more]

BLAST of Cucsa.241900.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52440.1	1.1e-36	40.00	Dof-type zinc finger DNA-binding family protein	[more]
AT4G24060.1	5.4e-28	48.78	Dof-type zinc finger DNA-binding family protein	[more]
AT5G60200.1	9.2e-28	53.85	TARGET OF MONOPTEROS 6	[more]
AT1G21340.1	4.6e-27	90.57	Dof-type zinc finger DNA-binding family protein	[more]
AT1G07640.3	4.6e-27	47.45	Dof-type zinc finger DNA-binding family protein	[more]

BLAST of Cucsa.241900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437870\|ref\|XP_004136713.1\|	1.3e-79	98.62	PREDICTED: dof zinc finger protein DOF3.5 [Cucumis sativus]	[more]
gi\|449437870\|ref\|XP_004136713.1\|	1.3e-34	100.00	PREDICTED: dof zinc finger protein DOF3.5 [Cucumis sativus]	[more]
gi\|659085778\|ref\|XP_008443597.1\|	1.3e-34	100.00	PREDICTED: dof zinc finger protein DOF3.5 [Cucumis melo]	[more]
gi\|593799877\|ref\|XP_007162976.1\|	8.4e-39	40.89	hypothetical protein PHAVU_001G196100g [Phaseolus vulgaris]	[more]
gi\|823136705\|ref\|XP_012468121.1\|	1.9e-38	42.40	PREDICTED: dof zinc finger protein DOF3.5-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.241900	Cucsa.241900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.241900.1	Cucsa.241900.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.241900.1.CDS.2	Cucsa.241900.1.CDS.2	CDS
Cucsa.241900.1.CDS.1	Cucsa.241900.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 1..66 score: 2.0
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 13..66 score: 6.1
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 15..51 scor
IPR003851	Zinc finger, Dof-type	PROFILE	PS50884	ZF_DOF_2	coord: 13..67 score: 28
None	No IPR available	PANTHER	PTHR31992	FAMILY NOT NAMED	coord: 1..66 score: 3.3
None	No IPR available	PANTHER	PTHR31992:SF8	DOF ZINC FINGER PROTEIN DOF1.1-RELATED	coord: 1..66 score: 3.3