Cucsa.241730.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.241730.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Harpin inducing protein
Location	scaffold02047 : 1645999 .. 1646664 (-)
Sequence length	666

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACAAACAACCCCATCTCAACGGCGCCTTTTACGGCCCTGCCGTCCCTCCTCCGGCAAAGACCTACCATCGCCACGGCCACGGCCGAGGCTGCGCCTGCTGCCTTCTCACCACCTTTCTCAAGTTCCTCATCGCCATAGTCGTCGTCCTTGGTGTAGCTGTCTTGGTATTTTGGCTCGTATTCCGTCCCAATAAGCTCAAGTTCGACGTCACCGGAGCCCAACTCACCCGCTTCAACGTCTCCGGCAACCAACTCCATTACGATCTGGCATTAAACCTCACTGTCCGAAACCCCAACAAGCGAATCGGAGTGTACTACGACGTCATCGAAGCTTCGCCGTATTATAAAGACCAGAGGCTTAACACACAATGGTTAACGCCGTTCTACCAAGGCCACAAAACCACCTCCGTCCTCAGCCCCCAATTCGACGGCCAGCAGATCGTGATTTTCGCCGGCGACAAGCTTACAGAGTTCAACGGGGAGACACTTGCCGGCGTCTTCGAGGTCGACGTCAAGATCCGTCTCCGTTTGAGGTTGAAGGTCGGCGCCGTGAGAATTGGGAAGTTTAGGCCGAAGGTTAACTGTGAATTGAAGGTTCCATTGAAATCCAATCCAAACTCCTTTACTTTTCAGACCACTCGCTGCGATTTCGATTTCTGA

mRNA sequence

ATGGCTGACAAACAACCCCATCTCAACGGCGCCTTTTACGGCCCTGCCGTCCCTCCTCCGGCAAAGACCTACCATCGCCACGGCCACGGCCGAGGCTGCGCCTGCTGCCTTCTCACCACCTTTCTCAAGTTCCTCATCGCCATAGTCGTCGTCCTTGGTGTAGCTGTCTTGGTATTTTGGCTCGTATTCCGTCCCAATAAGCTCAAGTTCGACGTCACCGGAGCCCAACTCACCCGCTTCAACGTCTCCGGCAACCAACTCCATTACGATCTGGCATTAAACCTCACTGTCCGAAACCCCAACAAGCGAATCGGAGTGTACTACGACGTCATCGAAGCTTCGCCGTATTATAAAGACCAGAGGCTTAACACACAATGGTTAACGCCGTTCTACCAAGGCCACAAAACCACCTCCGTCCTCAGCCCCCAATTCGACGGCCAGCAGATCGTGATTTTCGCCGGCGACAAGCTTACAGAGTTCAACGGGGAGACACTTGCCGGCGTCTTCGAGGTCGACGTCAAGATCCGTCTCCGTTTGAGGTTGAAGGTCGGCGCCGTGAGAATTGGGAAGTTTAGGCCGAAGGTTAACTGTGAATTGAAGGTTCCATTGAAATCCAATCCAAACTCCTTTACTTTTCAGACCACTCGCTGCGATTTCGATTTCTGA

Coding sequence (CDS)

ATGGCTGACAAACAACCCCATCTCAACGGCGCCTTTTACGGCCCTGCCGTCCCTCCTCCGGCAAAGACCTACCATCGCCACGGCCACGGCCGAGGCTGCGCCTGCTGCCTTCTCACCACCTTTCTCAAGTTCCTCATCGCCATAGTCGTCGTCCTTGGTGTAGCTGTCTTGGTATTTTGGCTCGTATTCCGTCCCAATAAGCTCAAGTTCGACGTCACCGGAGCCCAACTCACCCGCTTCAACGTCTCCGGCAACCAACTCCATTACGATCTGGCATTAAACCTCACTGTCCGAAACCCCAACAAGCGAATCGGAGTGTACTACGACGTCATCGAAGCTTCGCCGTATTATAAAGACCAGAGGCTTAACACACAATGGTTAACGCCGTTCTACCAAGGCCACAAAACCACCTCCGTCCTCAGCCCCCAATTCGACGGCCAGCAGATCGTGATTTTCGCCGGCGACAAGCTTACAGAGTTCAACGGGGAGACACTTGCCGGCGTCTTCGAGGTCGACGTCAAGATCCGTCTCCGTTTGAGGTTGAAGGTCGGCGCCGTGAGAATTGGGAAGTTTAGGCCGAAGGTTAACTGTGAATTGAAGGTTCCATTGAAATCCAATCCAAACTCCTTTACTTTTCAGACCACTCGCTGCGATTTCGATTTCTGA

Protein sequence

MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFWLVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQTTRCDFDF*

Homology

[Close]

BLAST of Cucsa.241730.1 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.2e-65
Identity = 122/228 (53.51%), Postives = 167/228 (73.25%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPA-KTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVF 60
           MA +QP LNGAFYGP+VPPPA K Y+R GHGRGC CCLL+ F+K +I+++V+LGVA L+F
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  WLVFRPNKLKFDVTGAQLTRFNVSG--NQLHYDLALNLTVRNPNKRIGVYYDVIEASPYY 120
           WL+ RP  +KF VT A LTRF+ +   N L Y+LAL + VRNPNKRIG+YYD IEA  YY
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY 120

Query: 121 KDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRL 180
           + +R +T  LTPFYQGHK T+VL+P F GQ +VIF   +    N E ++GV+ +++K RL
Sbjct: 121 EGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRL 180

Query: 181 RLRLKVGAVRIGKFRPKVNC-ELKVPLKSNPNSFTFQTT---RCDFDF 222
           R+R K+G ++  + +PKV+C +L++PL ++  + T  T    +CDFDF
Sbjct: 181 RVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTSTVFPIKCDFDF 227

[Close]

BLAST of Cucsa.241730.1 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-57
Identity = 107/228 (46.93%), Postives = 147/228 (64.47%), Query Frame = 1


Query: 8   LNGAFYGPAVPPPAKTYHRHGHGRG-----------CACCLLTTFLKFLIAIVVVLGVAV 67
           LNGA+YGP++PPP K  H HG   G           C CC+L+     LI I V+LG+A 
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LVFWLVFRPNKLKFDVTGAQLTRFNVSG-NQLHYDLALNLTVRNPNKRIGVYYDVIEASP 127
           L+ WL+FRPN +KF VT A+LT F +   N L Y+L LN T+RNPN+RIGVYYD IE   
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRG 123

Query: 128 YYKDQRLN-TQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVK 187
           YY DQR   +  ++ FYQGHK T+V+  +  GQQ+V+  G +  + N +  + ++ +D K
Sbjct: 124 YYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAK 183

Query: 188 IRLRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNS-FTFQTTRCDFDF 222
           +RL++R K G ++  +F+PK+ C+LKVPL SN  S F FQ T+CD DF
Sbjct: 184 LRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTKCDVDF 231

[Close]

BLAST of Cucsa.241730.1 vs. Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-23
Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = 1


Query: 64  RPNKLKFDVTGAQLTRFNV-SGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQRL 123
           R N +KF V  A+LT F++ S N L Y L+LNL++RN    IG++YD  EA+ YY +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 124 NTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLRLK 183
               +  FY G K T +L   F+GQ +V+  G++  +F  +   GV+ +DVK+ +  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 184 VGAVRIGKFRPKVNCELKVPLKSNPNSFT 212
           V  +     +P V C LK+PL    ++ T
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNST 151

[Close]

BLAST of Cucsa.241730.1 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-14
Identity = 52/181 (28.73%), Postives = 88/181 (48.62%), Query Frame = 1


Query: 25  HRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFWLVFRPNKLKFDVTGAQLTRFNVSG 84
           H  G G G A  +    + F+I +++     + + W++ +P K +F +  A +  FN+S 
Sbjct: 9   HGGGGGGGTASRICGVIIGFIIIVLIT----IFLVWIILQPTKPRFILQDATVYAFNLSQ 68

Query: 85  -NQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQRLNTQW-LTPFYQGHKTTSVLSP 144
            N L  +  + +  RN N RIG+YYD +     Y++Q++  +  + P YQGHK  +V SP
Sbjct: 69  PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSP 128

Query: 145 QFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLRLKVGAVRIGKFRPKVNCELKVP 204
              G  + I A         E   G   + ++   R+R KVG +  GK+   V C+  + 
Sbjct: 129 FVYGNSVPI-APFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFIN 184

[Close]

BLAST of Cucsa.241730.1 vs. TrEMBL
Match: A0A0A0LGS5_CUCSA (Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 3.9e-126
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60
           MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60

Query: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120
           LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ
Sbjct: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120

Query: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180
           RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR
Sbjct: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180

Query: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQTTRCDFDF 222
           LKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQTTRCDFDF
Sbjct: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQTTRCDFDF 221

[Close]

BLAST of Cucsa.241730.1 vs. TrEMBL
Match: A0A0A0LBJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.8e-107
Identity = 185/222 (83.33%), Postives = 202/222 (90.99%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60
           MADKQPHLNGAFYGPAVPPP KTYH H H RGCACCLLTTFLK L+ IVVV+G+AVL+ W
Sbjct: 1   MADKQPHLNGAFYGPAVPPPPKTYHHHAHRRGCACCLLTTFLKLLVTIVVVVGIAVLILW 60

Query: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120
            +FRP+KL FDVT A+LTRFN+SGNQLHY+LALNLT+RNPNKRIGVYYDVIEASP+YKDQ
Sbjct: 61  FLFRPHKLTFDVTDAELTRFNISGNQLHYNLALNLTIRNPNKRIGVYYDVIEASPFYKDQ 120

Query: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180
           RLNTQWL PFYQGHKTT+VLSP FDGQQIV  AGDKLTEFNGETLAG+F VD++ RL+LR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQQIVFLAGDKLTEFNGETLAGIFNVDLRFRLQLR 180

Query: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFTF-QTTRCDFDF 222
           LKVG VRIGKF+PKVNCELKVPLKSN NSFTF Q TRCDFDF
Sbjct: 181 LKVGVVRIGKFKPKVNCELKVPLKSNANSFTFLQATRCDFDF 222

[Close]

BLAST of Cucsa.241730.1 vs. TrEMBL
Match: A0A0D2MF43_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G235900 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.1e-75
Identity = 131/226 (57.96%), Postives = 174/226 (76.99%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCAC--CLLTTFLKFLIAIVVVLGVAVLV 60
           M+DKQ HLNGA+YGP++PPP +TYHR G G GC C  CLL      +I  +V++G+AV +
Sbjct: 1   MSDKQAHLNGAYYGPSIPPPTRTYHRPGRGSGCGCGCCLLKCLFNIIITAIVIIGLAVFI 60

Query: 61  FWLVFRPNKLKFDVTGAQLTRFNV-SGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYY 120
           FWL+FRPNK+KF VT  QLT+FN+ S N LHY+LALN+T+RNPN+RIG+YYD IEA  YY
Sbjct: 61  FWLIFRPNKVKFHVTDVQLTQFNLTSNNTLHYNLALNMTIRNPNRRIGIYYDRIEARAYY 120

Query: 121 KDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRL 180
           +DQR +T+ LTPFYQGHK TS L+P F GQQ V    D+ +EFN + + GV+++DVK+ L
Sbjct: 121 EDQRFDTETLTPFYQGHKNTSYLNPVFVGQQFVRLGADETSEFNEDRVNGVYDIDVKLYL 180

Query: 181 RLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSF--TFQTTRCDFDF 222
           R+R K+G V+ G+F+P+++C+LKVPL +   SF  TF+TTRCD DF
Sbjct: 181 RIRFKLGRVKTGRFKPRISCDLKVPLNTGNGSFGGTFKTTRCDLDF 226

[Close]

BLAST of Cucsa.241730.1 vs. TrEMBL
Match: B9T2S1_RICCO (Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.1e-75
Identity = 133/222 (59.91%), Postives = 177/222 (79.73%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGH-GRGCACCLLTTFLKFLIAIVVVLGVAVLVF 60
           MA+KQ  LNGA+YGPA+PPP ++YHR G  G GC CCLL+  LK +I I VVLG+AVL+F
Sbjct: 1   MAEKQAQLNGAYYGPAIPPP-QSYHRPGRSGCGCGCCLLSCLLKIIITIAVVLGLAVLIF 60

Query: 61  WLVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKD 120
           WLV RPNK+KF VT A L+ FN++ N LHY+LALN+TVRNPNK+IG+YYD IEA   Y+D
Sbjct: 61  WLVVRPNKVKFHVTEANLSEFNINNNTLHYNLALNITVRNPNKKIGIYYDRIEARGKYED 120

Query: 121 QRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRL 180
           QR  +Q+LTPFYQGHK TS+L+P F GQQ+++ +GD+LT+FN E ++GV+ +DV + L++
Sbjct: 121 QRFGSQFLTPFYQGHKNTSILTPAFQGQQLMLLSGDELTDFNEERVSGVYSIDVTLYLKI 180

Query: 181 RLKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQTTRCDFDF 222
           R K+G ++IGKF+PK+ CELKVP  SN ++  FQ T CD+D+
Sbjct: 181 RFKIGDLKIGKFKPKIQCELKVP--SNSSAVPFQRTECDWDY 219

[Close]

BLAST of Cucsa.241730.1 vs. TrEMBL
Match: B0ZC11_CASGL (Hairpin-inducing protein OS=Casuarina glauca PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.5e-72
Identity = 129/225 (57.33%), Postives = 172/225 (76.44%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGH--GRGCAC-CLLTTFLKFLIAIVVVLGVAVL 60
           MA+KQ +LNGA+YGPAVPPP ++YHR G   GRGC C C     LK +++++V+LG+A L
Sbjct: 1   MAEKQTNLNGAYYGPAVPPPPQSYHRPGRSGGRGCGCACFFCFLLKLIVSVIVILGLAAL 60

Query: 61  VFWLVFRPNKLKFDVTGAQLTRFNVSGNQ-LHYDLALNLTVRNPNKRIGVYYDVIEASPY 120
           +FWL+FRP  + F VT A LT+F+ S N  L Y+LALN++VRN N++IGVYYD IEA  Y
Sbjct: 61  IFWLIFRPTSINFHVTDATLTQFDFSDNNTLQYNLALNVSVRNSNRKIGVYYDTIEARAY 120

Query: 121 YKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIR 180
           Y+DQR  T  LTPFYQGHKTTS L+P+F GQQ+V+   D+L++FN E  +GV+ +DVK  
Sbjct: 121 YEDQRFATDSLTPFYQGHKTTSTLNPEFAGQQLVLLETDQLSQFNSEKTSGVYSIDVKFY 180

Query: 181 LRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQTTRCDFDF 222
           LR+R KVG VR+GKF+P+V CELKVP+ S  +S +FQTT+C+ D+
Sbjct: 181 LRIRFKVGKVRVGKFKPQVKCELKVPMSSGTSSESFQTTKCELDY 225

[Close]

BLAST of Cucsa.241730.1 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 249.6 bits (636), Expect = 1.8e-66
Identity = 122/228 (53.51%), Postives = 167/228 (73.25%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPA-KTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVF 60
           MA +QP LNGAFYGP+VPPPA K Y+R GHGRGC CCLL+ F+K +I+++V+LGVA L+F
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  WLVFRPNKLKFDVTGAQLTRFNVSG--NQLHYDLALNLTVRNPNKRIGVYYDVIEASPYY 120
           WL+ RP  +KF VT A LTRF+ +   N L Y+LAL + VRNPNKRIG+YYD IEA  YY
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY 120

Query: 121 KDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRL 180
           + +R +T  LTPFYQGHK T+VL+P F GQ +VIF   +    N E ++GV+ +++K RL
Sbjct: 121 EGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRL 180

Query: 181 RLRLKVGAVRIGKFRPKVNC-ELKVPLKSNPNSFTFQTT---RCDFDF 222
           R+R K+G ++  + +PKV+C +L++PL ++  + T  T    +CDFDF
Sbjct: 181 RVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTSTVFPIKCDFDF 227

[Close]

BLAST of Cucsa.241730.1 vs. TAIR10
Match: AT5G06320.1 (AT5G06320.1 NDR1/HIN1-like 3)

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-58
Identity = 107/228 (46.93%), Postives = 147/228 (64.47%), Query Frame = 1


Query: 8   LNGAFYGPAVPPPAKTYHRHGHGRG-----------CACCLLTTFLKFLIAIVVVLGVAV 67
           LNGA+YGP++PPP K  H HG   G           C CC+L+     LI I V+LG+A 
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LVFWLVFRPNKLKFDVTGAQLTRFNVSG-NQLHYDLALNLTVRNPNKRIGVYYDVIEASP 127
           L+ WL+FRPN +KF VT A+LT F +   N L Y+L LN T+RNPN+RIGVYYD IE   
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRG 123

Query: 128 YYKDQRLN-TQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVK 187
           YY DQR   +  ++ FYQGHK T+V+  +  GQQ+V+  G +  + N +  + ++ +D K
Sbjct: 124 YYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAK 183

Query: 188 IRLRLRLKVGAVRIGKFRPKVNCELKVPLKSNPNS-FTFQTTRCDFDF 222
           +RL++R K G ++  +F+PK+ C+LKVPL SN  S F FQ T+CD DF
Sbjct: 184 LRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTKCDVDF 231

[Close]

BLAST of Cucsa.241730.1 vs. TAIR10
Match: AT3G11650.1 (AT3G11650.1 NDR1/HIN1-like 2)

HSP 1 Score: 211.1 bits (536), Expect = 7.1e-55
Identity = 103/238 (43.28%), Postives = 148/238 (62.18%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAK---TYHRHGHG-----------RGCACCLLTTFLKFLI 60
           M  KQP+LNGA+YGP++PPP K   +Y+  G G           R C CC+L+     LI
Sbjct: 1   MGSKQPYLNGAYYGPSIPPPPKAHRSYNSPGFGCCCFSCLGSCLRCCGCCILSLICNILI 60

Query: 61  AIVVVLGVAVLVFWLVFRPNKLKFDVTGAQLTRFNVS-GNQLHYDLALNLTVRNPNKRIG 120
           A+ V+LGVA L+ WL+FRPN +KF V  A L RF+    N LHY L LN T+RNPN+R+G
Sbjct: 61  AVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVG 120

Query: 121 VYYDVIEASPYYKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETL 180
           VYYD    S YY DQR  +  ++ FYQGHK T+V+  + +GQ +V+      T+   +  
Sbjct: 121 VYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEK 180

Query: 181 AGVFEVDVKIRLRLRLKVGAVRIGKFRPKVNC-ELKVPLKSNPNS--FTFQTTRCDFD 221
           +G++ ++ K+RL +R K   ++  K +PK+ C +LK+PL S+ ++  F FQ  +CDFD
Sbjct: 181 SGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQPVQCDFD 238

[Close]

BLAST of Cucsa.241730.1 vs. TAIR10
Match: AT2G35460.1 (AT2G35460.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-49
Identity = 97/233 (41.63%), Postives = 136/233 (58.37%), Query Frame = 1


Query: 8   LNGAFYGPAVPPPAKTYHRHGH-----GRG-CAC----------CLLTTFLKFLIAIVVV 67
           LNGA YGP + PP KTY+ HG      G G C C          CL+      LI ++V 
Sbjct: 5   LNGASYGPPIKPPVKTYYSHGRRGSDVGCGICGCFSSCLLCCGGCLVNIICNILIGVLVC 64

Query: 68  LGVAVLVFWLVFRPNKLKFDVTGAQLTRFNVS--GNQLHYDLALNLTVRNPNKRIGVYYD 127
           LGV  L+ W + RPN +KF VT A LTRF      + LHY+++LN ++RNPN+R+G++YD
Sbjct: 65  LGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIRNPNQRLGIHYD 124

Query: 128 VIEASPYYKDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVF 187
            +E   YY DQR +   +T FYQGHK T+V+  + +GQ++V+       +F  +  +GV+
Sbjct: 125 QLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNGQKLVLLGAGGRRDFREDRRSGVY 184

Query: 188 EVDVKIRLRLRLKVGAVRIGKFRPKVNCELKVPL--KSNPNSFTFQTTRCDFD 221
            +DVK+R +LR K G +     RPK+ C LKVPL   S+   F F  T+C  D
Sbjct: 185 RIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLSTSSSDERFQFHPTKCHVD 237

[Close]

BLAST of Cucsa.241730.1 vs. TAIR10
Match: AT1G32270.1 (AT1G32270.1 syntaxin, putative)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-24
Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = 1


Query: 64  RPNKLKFDVTGAQLTRFNV-SGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQRL 123
           R N +KF V  A+LT F++ S N L Y L+LNL++RN    IG++YD  EA+ YY +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 124 NTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLRLK 183
               +  FY G K T +L   F+GQ +V+  G++  +F  +   GV+ +DVK+ +  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 184 VGAVRIGKFRPKVNCELKVPLKSNPNSFT 212
           V  +     +P V C LK+PL    ++ T
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNST 151

[Close]

BLAST of Cucsa.241730.1 vs. NCBI nr
Match: gi|449437456|ref|XP_004136508.1| (PREDICTED: protein YLS9 [Cucumis sativus])

HSP 1 Score: 458.8 bits (1179), Expect = 5.6e-126
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60
           MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60

Query: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120
           LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ
Sbjct: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120

Query: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180
           RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR
Sbjct: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180

Query: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQTTRCDFDF 222
           LKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQTTRCDFDF
Sbjct: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFTFQTTRCDFDF 221

[Close]

BLAST of Cucsa.241730.1 vs. NCBI nr
Match: gi|659084478|ref|XP_008442908.1| (PREDICTED: protein YLS9 [Cucumis melo])

HSP 1 Score: 435.3 bits (1118), Expect = 6.6e-119
Identity = 209/222 (94.14%), Postives = 214/222 (96.40%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60
           MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKF IAIVVVLGV VLV W
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFFIAIVVVLGVTVLVLW 60

Query: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120
           LVFRPNKLKF VTGA+LTRFNVSGNQLHY+LALNLTVRNPNKRIGVYYDVIEASPYYKDQ
Sbjct: 61  LVFRPNKLKFHVTGAELTRFNVSGNQLHYNLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120

Query: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180
           RLNTQWLTPFYQGHKTT+VLSP FDGQQIV FAGDKLTEFNGETLAG+FEVDVK RLRLR
Sbjct: 121 RLNTQWLTPFYQGHKTTTVLSPHFDGQQIVFFAGDKLTEFNGETLAGIFEVDVKFRLRLR 180

Query: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFT-FQTTRCDFDF 222
           LKVGAVRIGKF+PKVNCELKVPLKSNPNSFT FQTTRCDFDF
Sbjct: 181 LKVGAVRIGKFKPKVNCELKVPLKSNPNSFTSFQTTRCDFDF 222

[Close]

BLAST of Cucsa.241730.1 vs. NCBI nr
Match: gi|659084480|ref|XP_008442909.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 400.6 bits (1028), Expect = 1.8e-108
Identity = 191/222 (86.04%), Postives = 204/222 (91.89%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60
           MADKQPHLNGAFYGPAVPPPAKTYHRHGH RGCACCLLTTFLK LI IVVV+G+AVLV W
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHRRGCACCLLTTFLKLLITIVVVVGIAVLVLW 60

Query: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120
           LVFRP+KL F VT A+LTRFN+SGNQLHY++ALNLTVRNPN RIGVYYDVIEASP+YKDQ
Sbjct: 61  LVFRPHKLTFHVTDAELTRFNISGNQLHYNMALNLTVRNPNNRIGVYYDVIEASPFYKDQ 120

Query: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180
           RLNTQWL PFYQ HKTT+VL P F+GQQIV  AGDKLTEFNGETLAGVF VD+  RL+LR
Sbjct: 121 RLNTQWLPPFYQDHKTTTVLRPHFNGQQIVFLAGDKLTEFNGETLAGVFNVDLTFRLQLR 180

Query: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFT-FQTTRCDFDF 222
           LKVGAVRIGKF+PKVNCELKVPLKSNPNSFT FQTTRCDFDF
Sbjct: 181 LKVGAVRIGKFKPKVNCELKVPLKSNPNSFTFFQTTRCDFDF 222

[Close]

BLAST of Cucsa.241730.1 vs. NCBI nr
Match: gi|778684454|ref|XP_011652031.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 2.6e-107
Identity = 185/222 (83.33%), Postives = 202/222 (90.99%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60
           MADKQPHLNGAFYGPAVPPP KTYH H H RGCACCLLTTFLK L+ IVVV+G+AVL+ W
Sbjct: 1   MADKQPHLNGAFYGPAVPPPPKTYHHHAHRRGCACCLLTTFLKLLVTIVVVVGIAVLILW 60

Query: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120
            +FRP+KL FDVT A+LTRFN+SGNQLHY+LALNLT+RNPNKRIGVYYDVIEASP+YKDQ
Sbjct: 61  FLFRPHKLTFDVTDAELTRFNISGNQLHYNLALNLTIRNPNKRIGVYYDVIEASPFYKDQ 120

Query: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180
           RLNTQWL PFYQGHKTT+VLSP FDGQQIV  AGDKLTEFNGETLAG+F VD++ RL+LR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQQIVFLAGDKLTEFNGETLAGIFNVDLRFRLQLR 180

Query: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFTF-QTTRCDFDF 222
           LKVG VRIGKF+PKVNCELKVPLKSN NSFTF Q TRCDFDF
Sbjct: 181 LKVGVVRIGKFKPKVNCELKVPLKSNANSFTFLQATRCDFDF 222

[Close]

BLAST of Cucsa.241730.1 vs. NCBI nr
Match: gi|823136724|ref|XP_012468130.1| (PREDICTED: protein YLS9-like [Gossypium raimondii])

HSP 1 Score: 289.7 bits (740), Expect = 4.5e-75
Identity = 131/226 (57.96%), Postives = 174/226 (76.99%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCAC--CLLTTFLKFLIAIVVVLGVAVLV 60
           M+DKQ HLNGA+YGP++PPP +TYHR G G GC C  CLL      +I  +V++G+AV +
Sbjct: 1   MSDKQAHLNGAYYGPSIPPPTRTYHRPGRGSGCGCGCCLLKCLFNIIITAIVIIGLAVFI 60

Query: 61  FWLVFRPNKLKFDVTGAQLTRFNV-SGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYY 120
           FWL+FRPNK+KF VT  QLT+FN+ S N LHY+LALN+T+RNPN+RIG+YYD IEA  YY
Sbjct: 61  FWLIFRPNKVKFHVTDVQLTQFNLTSNNTLHYNLALNMTIRNPNRRIGIYYDRIEARAYY 120

Query: 121 KDQRLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRL 180
           +DQR +T+ LTPFYQGHK TS L+P F GQQ V    D+ +EFN + + GV+++DVK+ L
Sbjct: 121 EDQRFDTETLTPFYQGHKNTSYLNPVFVGQQFVRLGADETSEFNEDRVNGVYDIDVKLYL 180

Query: 181 RLRLKVGAVRIGKFRPKVNCELKVPLKSNPNSF--TFQTTRCDFDF 222
           R+R K+G V+ G+F+P+++C+LKVPL +   SF  TF+TTRCD DF
Sbjct: 181 RIRFKLGRVKTGRFKPRISCDLKVPLNTGNGSFGGTFKTTRCDLDF 226

The following BLAST results are available for this feature:

BLAST of Cucsa.241730.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS9_ARATH	3.2e-65	53.51	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	1.9e-57	46.93	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]
SYP24_ARATH	2.3e-23	38.26	Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1	[more]
NHL12_ARATH	3.4e-14	28.73	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]

BLAST of Cucsa.241730.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGS5_CUCSA	3.9e-126	100.00	Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1	[more]
A0A0A0LBJ4_CUCSA	1.8e-107	83.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1	[more]
A0A0D2MF43_GOSRA	3.1e-75	57.96	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G235900 PE=4 SV=1	[more]
B9T2S1_RICCO	4.1e-75	59.91	Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1	[more]
B0ZC11_CASGL	5.5e-72	57.33	Hairpin-inducing protein OS=Casuarina glauca PE=2 SV=1	[more]

BLAST of Cucsa.241730.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35980.1	1.8e-66	53.51	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G06320.1	1.1e-58	46.93	NDR1/HIN1-like 3	[more]
AT3G11650.1	7.1e-55	43.28	NDR1/HIN1-like 2	[more]
AT2G35460.1	1.2e-49	41.63	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G32270.1	1.3e-24	38.26	syntaxin, putative	[more]

BLAST of Cucsa.241730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437456\|ref\|XP_004136508.1\|	5.6e-126	100.00	PREDICTED: protein YLS9 [Cucumis sativus]	[more]
gi\|659084478\|ref\|XP_008442908.1\|	6.6e-119	94.14	PREDICTED: protein YLS9 [Cucumis melo]	[more]
gi\|659084480\|ref\|XP_008442909.1\|	1.8e-108	86.04	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|778684454\|ref\|XP_011652031.1\|	2.6e-107	83.33	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|823136724\|ref\|XP_012468130.1\|	4.5e-75	57.96	PREDICTED: protein YLS9-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.241730	Cucsa.241730	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.241730.1	Cucsa.241730.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.241730.1.CDS.1	Cucsa.241730.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 95..198 score: 3.2
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 6..221 score: 4.7E
None	No IPR available	PANTHER	PTHR31415:SF4	HARPIN-INDUCED PROTEIN-LIKE-RELATED	coord: 6..221 score: 4.7E