Cucsa.194350.1 (mRNA) Cucumber (Gy14) v1

NameCucsa.194350.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01337 : 779404 .. 779626 (+)
Sequence length223
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAATATAACAAATGCTTTAAGCGACGTAAATAATCAACTCATTGTTCACTGCAGATCTGGCGATGATGACTTGAGAGTCCACCAACTCCCACATTTGATAAGCTACACCTTCACTTTTCGACAAAACTCATGGGGTTCGATCTTGTTTTATTTtAAATTTCAATGTTCTAGTTGGTTACATTACTTCAATATTTATAAAGATTCAAGAGAGAATGCGTTGCG

mRNA sequence

TTAATATAACAAATGCTTTAAGCGACGTAAATAATCAACTCATTGTTCACTGCAGATCTGGCGATGATGACTTGAGAGTCCACCAACTCCCACATTTGATAAGCTACACCTTCACTTTTCGACAAAACTCATGGGGTTCGATCTTGTTTTATTTTAAATTTCAATGTTCTAGTTGGTTACATTACTTCAATATTTATAAAGATTCAAGAGAGAATGCGTTGCG

Coding sequence (CDS)

TTAATATAACAAATGCTTTAAGCGACGTAAATAATCAACTCATTGTTCACTGCAGATCTGGCGATGATGACTTGAGAGTCCACCAACTCCCACATTTGATAAGCTACACCTTCACTTTTCGACAAAACTCATGGGGTTCGATCTTGTTTTATTTtAAATTTCAATGTTCTAGTTGGTTACATTACTTCAATATTTATAAAGATTCAAGAGAGAATGCGTTGCG

Protein sequence

NITNALSDVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLHYFNIYKDSRENALX
BLAST of Cucsa.194350.1 vs. TrEMBL
Match: A0A0A0LI28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162130 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-20
Identity = 48/72 (66.67%), Postives = 53/72 (73.61%), Query Frame = 1

Query: 1   NITNALSDVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLH 60
           NITNAL DVNNQL +HC+SGDDDL VHQL HL SY F FR N WGS LFY  F  +   H
Sbjct: 77  NITNALKDVNNQLTIHCKSGDDDLGVHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSSH 136

Query: 61  YFNIYKDSRENA 73
           YFNIY+D R+ A
Sbjct: 137 YFNIYQDLRDRA 148

BLAST of Cucsa.194350.1 vs. TrEMBL
Match: A0A067F8M9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039691mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-08
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 1

Query: 8  DVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLHYFNIYKD 67
          D    L VHC+SGDDDL    +PH  +Y F FR N WG+ LFY KF   +   +F+ Y D
Sbjct: 7  DAGVDLAVHCKSGDDDLGEQVIPHQGNYGFHFRPNFWGTTLFYCKFAWQNTWKWFHTYID 66

Query: 68 SREN 72
           RE+
Sbjct: 67 GREH 70

BLAST of Cucsa.194350.1 vs. TrEMBL
Match: A0A072VJZ5_MEDTR (Leguminosin group486 secreted peptide OS=Medicago truncatula GN=MTR_1g057370 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-07
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1

Query: 1   NITNALSDVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLH 60
           N+ N L D N  L VHC+S DDDL VH L H  +Y FTFR    G+  FY  FQ +   H
Sbjct: 31  NLINNL-DNNLDLTVHCKSADDDLGVHLLHHGDTYGFTFRDKIIGNTQFYCSFQWTGEFH 90

Query: 61  YFNIYKDSREN 72
           YF++Y  S ++
Sbjct: 91  YFDVYIASEDS 100

BLAST of Cucsa.194350.1 vs. TrEMBL
Match: M5XHU2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022379mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-07
Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 1

Query: 2   ITNALSDVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLHY 61
           I N L +  + ++VHC+S +DDL VHQL +  S+ F F  N WG+  FY  F   S + +
Sbjct: 41  IINGLLNPKSDVLVHCKSENDDLGVHQLQYNASFEFHFSPNFWGTTQFYCSFVWPSRIEW 100

Query: 62  FNIYKDSRE 71
           F++YK  R+
Sbjct: 101 FDVYKHKRD 109

BLAST of Cucsa.194350.1 vs. TrEMBL
Match: V4UEP7_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10018205mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-07
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1

Query: 13 LIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLHYFNIYKDSREN 72
          L VHC+SGDDDL    +PH  +Y F F+ N WG+ LFY KF   +   +F+ Y D RE+
Sbjct: 5  LAVHCKSGDDDLGEQVIPHQGNYGFHFQPNFWGTTLFYCKFAWQNTWKWFDTYIDGREH 63

BLAST of Cucsa.194350.1 vs. TAIR10
Match: AT1G04645.1 (AT1G04645.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-08
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1

Query: 13  LIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLHYFNIYKDSRENA 72
           L +HC+S  DDL +H +P    Y F F+ N W S LF+  FQ  S    F+IY   R+  
Sbjct: 42  LTIHCKSKQDDLGIHVVPFKQEYHFKFQPNLWKSTLFFCSFQWDSQFKSFDIYDAQRDQG 101

Query: 73  L 74
           +
Sbjct: 102 I 102

BLAST of Cucsa.194350.1 vs. NCBI nr
Match: gi|659121598|ref|XP_008460739.1| (PREDICTED: uncharacterized protein LOC103499501 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-26
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1

Query: 1  NITNALSDVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLH 60
          NITN +S VNNQL VHC+SGDDDL VH+LPHL+SYTFTFR N WGS LFY KFQ SSWLH
Sbjct: 4  NITNEISGVNNQLTVHCKSGDDDLGVHKLPHLVSYTFTFRPNFWGSTLFYCKFQWSSWLH 63

Query: 61 YFNIYKDSREN 72
          YF+IYKDSR+N
Sbjct: 64 YFDIYKDSRDN 74

BLAST of Cucsa.194350.1 vs. NCBI nr
Match: gi|700206411|gb|KGN61530.1| (hypothetical protein Csa_2G162130 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 5.2e-20
Identity = 48/72 (66.67%), Postives = 53/72 (73.61%), Query Frame = 1

Query: 1   NITNALSDVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLH 60
           NITNAL DVNNQL +HC+SGDDDL VHQL HL SY F FR N WGS LFY  F  +   H
Sbjct: 77  NITNALKDVNNQLTIHCKSGDDDLGVHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSSH 136

Query: 61  YFNIYKDSRENA 73
           YFNIY+D R+ A
Sbjct: 137 YFNIYQDLRDRA 148

BLAST of Cucsa.194350.1 vs. NCBI nr
Match: gi|659121606|ref|XP_008460743.1| (PREDICTED: uncharacterized protein LOC103499506 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 47/72 (65.28%), Postives = 53/72 (73.61%), Query Frame = 1

Query: 1  NITNALSDVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLH 60
          NITNAL DVNNQL +HC+SGDDDL VH L HL SY F FR N W S LFY  FQ + + H
Sbjct: 13 NITNALKDVNNQLTIHCKSGDDDLGVHHLSHLASYAFNFRLNFWDSTLFYCNFQWTGFSH 72

Query: 61 YFNIYKDSRENA 73
          YF+IYKD R+ A
Sbjct: 73 YFDIYKDIRDRA 84

BLAST of Cucsa.194350.1 vs. NCBI nr
Match: gi|659121602|ref|XP_008460741.1| (PREDICTED: uncharacterized protein LOC103499504 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 1   NITNALSDVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLH 60
           NITNAL  VNNQL +HC+SGDDDL VHQL HL SY F FR N WG+ LFY  FQ + + H
Sbjct: 35  NITNALKGVNNQLTIHCKSGDDDLGVHQLSHLASYAFNFRPNFWGTTLFYCNFQWTGFSH 94

Query: 61  YFNIYKDSRE 71
           YF+IYKD R+
Sbjct: 95  YFDIYKDIRD 104

BLAST of Cucsa.194350.1 vs. NCBI nr
Match: gi|659121604|ref|XP_008460742.1| (PREDICTED: uncharacterized protein LOC103499505 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 5.4e-17
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 1

Query: 3  TNALSDVNNQLIVHCRSGDDDLRVHQLPHLISYTFTFRQNSWGSILFYFKFQCSSWLHYF 62
          +NAL  +NNQL +HCRSGDDDL  HQLPHL SY F+FR N WG+ LFY  ++   + HYF
Sbjct: 25 SNALKGINNQLTIHCRSGDDDLGFHQLPHLASYAFSFRPNFWGTTLFYCTYEWLGFFHYF 84

Query: 63 NIYKDSRE 71
          + YKD R+
Sbjct: 85 DTYKDVRD 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LI28_CUCSA3.6e-2066.67Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162130 PE=4 SV=1[more]
A0A067F8M9_CITSI7.1e-0846.88Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039691mg PE=4 S... [more]
A0A072VJZ5_MEDTR2.1e-0746.48Leguminosin group486 secreted peptide OS=Medicago truncatula GN=MTR_1g057370 PE=... [more]
M5XHU2_PRUPE2.7e-0740.58Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022379mg PE=4 S... [more]
V4UEP7_9ROSI4.6e-0747.46Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10018205mg PE=... [more]
Match NameE-valueIdentityDescription
AT1G04645.16.3e-0839.34 Plant self-incompatibility protein S1 family[more]
Match NameE-valueIdentityDescription
gi|659121598|ref|XP_008460739.1|2.8e-2678.87PREDICTED: uncharacterized protein LOC103499501 [Cucumis melo][more]
gi|700206411|gb|KGN61530.1|5.2e-2066.67hypothetical protein Csa_2G162130 [Cucumis sativus][more]
gi|659121606|ref|XP_008460743.1|1.5e-1965.28PREDICTED: uncharacterized protein LOC103499506 [Cucumis melo][more]
gi|659121602|ref|XP_008460741.1|2.0e-1965.71PREDICTED: uncharacterized protein LOC103499504 [Cucumis melo][more]
gi|659121604|ref|XP_008460742.1|5.4e-1758.82PREDICTED: uncharacterized protein LOC103499505 [Cucumis melo][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.194350Cucsa.194350gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.194350.1Cucsa.194350.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.194350.1.CDS.1Cucsa.194350.1.CDS.1CDS


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 2..70
score: 1.7
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 1..69
score: 2.5
NoneNo IPR availablePANTHERPTHR31232:SF5GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K14A17-RELATEDcoord: 1..69
score: 2.5