Cucsa.189560.2 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCACCCCCATCTCTTCCATTTTCCCATTTCCCATCTCTTCTACTCTCAAACGCGCTTTCTCTTTCTCTTCTTCCAGGTTTGTTTTCCCCTCTCTCTCCCCCCCCACCCTTCAATTTCCATCTTCTCAAATCTCTATCATCCTCTAATTCACCCGCTCCCTCTTTCTAGGGTTTCTTTCTTTTCTTGATTTCACCGCCTCTCTTGGGTTTTGAGGACAATGAGCGATCACCTCGTCCTTTACGTTGATAATTTGATTCCACCAGCTCCTCCACTTCAACCTGCATCCGACCTCCTTCATCCTCAACCCTCTGAGGCTCTTCCGGACTCCCCTGCGCCTGCGCCTGCGCCTGGTCCTTCCTGTTCTACTGCAACCGCTCATGATCGGACGGTTGAGACGGATGCTCCCAATGAGGATGACCCTCTCATTCAGGTGGCTGAGTGCCGTATTTGTCAGGAAGAAGACAGTCTCAATAATTTAGAAACTCCCTGTGCTTGTAGTGGTAGTCTTAAGGTATTTCACGCTTTACCCTCCCTTTCTACCCGTTCTTAACTTCTTCTTCTTCTTCTTTTTTTTAATGTGAATAAACAGGACACCCTTTTTGGTTGTTCTTCATTGATTTGGCCTTCTCCTTTTCTCTGCTTTGGATTTATGTATGCTGTTGCTACTGAATTTGAAACTTTGGATATAGTTCAACGGGGTTTAGCAACTTTCTGCTTTTTTCTGGGGATGTGTTTAATTATATTTTTATTGCTTGTATTTGTTTTCTTCTTTTAAATTCTTTTGTTACTTCCAAAGTGGTTTTGTTTTCGTGGAAGCAAGATGCGAAAGGATATCAAATTATGAAGTTATTTAGTATTTTCGAAATCTTTGATGGATCAGAGTTCCGTATGAATTTTATAGTGCCTGTTGAAAAAAGATGTGCTTATATCTGGAGAAGATTTATATCATTAACGTAGCGAGGACTAGGATGAAGTGCACGAAATAACTTGCTTCATTGGTGCTCTCCTTTTATACATAATTTGGTTACTTGCTTATCGATCTATATAAAATTGTTCCCAATGCTTTGTTTGTGACCTTTTAGTGTTATCTCCCGTCCAATGTTTGGTGATAAGAATAGTTCCTTCAACTAAGTTTTTGTTTGTATCAATTTCTATGATCGATGGGAAATTTTATAAGCCAGTACGTGTGTAGTGTATCTGAGTTATAAACTGGCTTGATAAAACTTGACTAGGAGTTTGGTTATTAATCTTGCTGTCATCGTATTTTTCCTCGCCAGAATACATCTACGTCCTTTGAATTGATCAATATGAAACCTCTGGTGAAACTTTTAACGGGCTTCTTTGTTTATTAATCTTACGTGTCTGATGAATGCTTTGTGTTCAGTACGCTCATAGAAAATGCGTTCAACATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGGTATGTATGATGCTTTTGATTTGATATGTCGACTACAATATTATTAATTTTAAAATTTTTGCAATTTTTGAATTTCAAATAAATGTATAATATAATCTTTATACTTTAGCTTGCGTGCAAGTTACCCTGTTAGTATCCTCTTTTGGAACTCATAGCTCCTTGAGTTTTGAAAAATGTAGGTTTTACATTGGGAATTCAAAATTTTCATTATTCTTGGTTACATGCATAAAAGTGCGTGGATGCTTAAGAGGGGCATCTCTTCTACCTCTAAAAGGCATGCACCTGATGGGGTTTTATTTTTAATCATAAATGAGATGTATAGTGTATGCCTCCCAATTTCGTCATATTGTATATTGGAAATGTATCATTCATGTTGGGCACTTGAAAACGAAAGGGAGAAAACCATATGCTTCATAATTTGTTTTGGTTGCTGACTTGCTGGTGTAGGGGAAAACTATAAAAGTCGAGAAAGAGAATTTGCTACTCTAGAAACCCCAAGGATGAAGAGACTTTTGCCCTTTTTCTTCTCTGTAAATTTGTCTCTACTCTGGACCAATCTCTTTTGTCTAAGCTCTCCAAGCCCTGCTTTCTTTGATACATTCATCTCTGAGAAAACCATAACAGTGGTTTAGTATAATAGCTCACACAATGATCTGTTTTTTTTGGTCAATGGGGTGCATTCTTTTTTCGATAGTTTGAGTGTATCATCACAGAAGATTGTTACAACACTGGGAGGAGAAAAAGATGAGCAGCACGTGCAGAGGTGCATTCCTCCCTCCAAATGCTTTAACCAGAAGTAAATATGGGATACTGGTTTGAATGTGCTATGTTTGGTGCAAGCTTGTTTGGGATTATTGTTAGACTTGGTGGACGTAAGGGGTGGCTGCTATGAAGATGCAGGTTCTTTAATGTGACTGTGATGGTGGATGAGGCATTAGTAGCTAGAGAGGCGTTGGTGTATGCTCAGACTTCAGTCTTAGGACATTAGTAGCTATGTTTGCTCAGACTTCAGGCGTTGGTGAAACGTTGGTTCAATGAATTAATCTTACCTATCTTTTAGCATGGGACTTTTGGTTAGGATGTTGGACTCTTCTCCCCTCACGTATAATTCTTTCTATTTTATTCTTGTTATTGTAACCTTGATCCTGTAGCTCATTCCTTGTGAAGTCTGGAACTTTTTGGGATTGGATGTTTGTTGGGCTTCCCGCCTTCCTAGTTCTGGTTGGATGCCTTCTTTATTTCACACAGTGCATTGTCTATGATTGTAATGCCTTCTTTCCTCTAAAGAAATACAATTGGAAAATATTTATCTGCTGTATTCTTGGGGTATTGACTTTTTTTCTGAATAAAATGACTTGCTCTTTTGGTCTGGATGTGTTTCATGTCATGTTGAATGGTATCATGAGTTTTTTATTTACAGATTCTTTTCTGATGATATTTTTCTTGTTTTGATTCTTCAATGACGCCGGTATGTTTTATTCTATTGCCAGCCTTATCAACCTGGATATACTGCACCACCTCGTTCTGAAGAAACTGCTATTGATATGGAGTAAGTTTAACCTTTTGGCTATTTTCAATTTGAATGCTGATGGTTTTATCAGTAATCATGTCTTTGCACACCCACAAGCATTTTATTTTCATGTATGATCTGGACTTGCATTTGAAAAGTTGATTTGGATGTGGATATGCACAGGGGAAGATGGACAATTGCTGGTAATCCATTAGACCTGAGAGATACTCGGCTATTGGCCATTGCAGAGGCAGAACGACATTTCTTGGAAGCTGATTATGATGATTATGCTGCTTCAAATGACAGTGGAGCTGCATTTTGTCGATCAGCTGCTCTTATTGTAGGTTTCCTAATTTTAGTTCGTAGAGAACTCTTTTCTCCCCTTAGACGATGGAATGATCTTGCACTTTCCAGTCTTTTATTTTCCATGAAACTATATGATCATTGATGAAATATTTGATTTGACGTGGCCAGCTATTAGCCCTTCTCCTTCTTCGCCATGCATTGACCATAACAGATCCTGACGGTGATGATGATGCATCTGCCTTTTTCTCTGTAAGCAGAGTTGAAATTTGTTTTCTTAAATTTGAAAGGCTAAATAATGTGTATGATCAGATGGATTTATAATCTGGATGCGCCTTTGACAGATTTTTATGCTTCGTGCTGCTGGTTTTCTCTTACCTTGCTACATCATGGCCTGGGCCATTAGTATCTTGCAACGTCGAAGACAAAGACAGGTTGGTGGTCAAGTACTTTTGGTGTTTTTTTAAAATTTTGCTCTTAAGAACTGTTTTGCTGACTAGATTTTATAAGTTAAGAATGACGGAAACTGGAATGTGTTATTTCCACAAGAAAATTGTCAATTTTCAATATTTAAAGAACAACACCGTCTCTGAAGTCAACTCTTAAAGTAGTTTACAACAGAGACATGCCCTATAGGTATACGTTGAAATTGTTTTGTTAAAGAAAACATAATGTTATGAAATTCTTTATTCTTAAGTATAGAATGATATTTTGGCATATGTTGTCGAAATCAAGGATCTTTGTGTAGGTTGGGTAGTAGCAGCTATAAGAGAGAGTTGGAACATAATGAAGTTTATAGAATGTTATTAAGTAAACAGTTTTGAATTGAATTGTGTGGTTGTGTGAACCCAACAGGAGGCAGCAGCATTGGCTGCAACACAAGTGGCGTTTGTACTACAACATGGACAGCATAGAGGTTTACAATTTGCAATTGCATCAACAGGACCGCCGCCCCTCACCCCTCATCCTCATCCTCATTCTCACCCTCACCCTCACCCTCACCCTCCCCCTCCCCCTCACACTGCAGTTTGAACCTTAACCAATCATGTAATAATACTATAATTTCAAACATGAAAAAACCTTTCTACTTTGCACTC CCACCCCCATCTCTTCCATTTTCCCATTTCCCATCTCTTCTACTCTCAAACGCGCTTTCTCTTTCTCTTCTTCCAGGGTTTCTTTCTTTTCTTGATTTCACCGCCTCTCTTGGGTTTTGAGGACAATGAGCGATCACCTCGTCCTTTACGTTGATAATTTGATTCCACCAGCTCCTCCACTTCAACCTGCATCCGACCTCCTTCATCCTCAACCCTCTGAGGCTCTTCCGGACTCCCCTGCGCCTGCGCCTGCGCCTGGTCCTTCCTGTTCTACTGCAACCGCTCATGATCGGACGGTTGAGACGGATGCTCCCAATGAGGATGACCCTCTCATTCAGGTGGCTGAGTGCCGTATTTGTCAGGAAGAAGACAGTCTCAATAATTTAGAAACTCCCTGTGCTTGTAGTGGTAGTCTTAAGTACGCTCATAGAAAATGCGTTCAACATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGATATACTGCACCACCTCGTTCTGAAGAAACTGCTATTGATATGGAGGGAAGATGGACAATTGCTGGTAATCCATTAGACCTGAGAGATACTCGGCTATTGGCCATTGCAGAGGCAGAACGACATTTCTTGGAAGCTGATTATGATGATTATGCTGCTTCAAATGACAGTGGAGCTGCATTTTGTCGATCAGCTGCTCTTATTCTATTAGCCCTTCTCCTTCTTCGCCATGCATTGACCATAACAGATCCTGACGGTGATGATGATGCATCTGCCTTTTTCTCTATTTTTATGCTTCGTGCTGCTGGTTTTCTCTTACCTTGCTACATCATGGCCTGGGCCATTAGTATCTTGCAACGTCGAAGACAAAGACAGGAGGCAGCAGCATTGGCTGCAACACAAGTGGCGTTTGTACTACAACATGGACAGCATAGAGGTTTACAATTTGCAATTGCATCAACAGGACCGCCGcccctcacccctcatcctcatcctcattctcaccctcaccctcaccctcaccctccccctccccctcACACTGCAGTTTGAACCTTAACCAATCATGTAATAATACTATAATTTCAAACATGAAAAAACCTTTCTACTTTGCACTC ATGAGCGATCACCTCGTCCTTTACGTTGATAATTTGATTCCACCAGCTCCTCCACTTCAACCTGCATCCGACCTCCTTCATCCTCAACCCTCTGAGGCTCTTCCGGACTCCCCTGCGCCTGCGCCTGCGCCTGGTCCTTCCTGTTCTACTGCAACCGCTCATGATCGGACGGTTGAGACGGATGCTCCCAATGAGGATGACCCTCTCATTCAGGTGGCTGAGTGCCGTATTTGTCAGGAAGAAGACAGTCTCAATAATTTAGAAACTCCCTGTGCTTGTAGTGGTAGTCTTAAGTACGCTCATAGAAAATGCGTTCAACATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGATATACTGCACCACCTCGTTCTGAAGAAACTGCTATTGATATGGAGGGAAGATGGACAATTGCTGGTAATCCATTAGACCTGAGAGATACTCGGCTATTGGCCATTGCAGAGGCAGAACGACATTTCTTGGAAGCTGATTATGATGATTATGCTGCTTCAAATGACAGTGGAGCTGCATTTTGTCGATCAGCTGCTCTTATTCTATTAGCCCTTCTCCTTCTTCGCCATGCATTGACCATAACAGATCCTGACGGTGATGATGATGCATCTGCCTTTTTCTCTATTTTTATGCTTCGTGCTGCTGGTTTTCTCTTACCTTGCTACATCATGGCCTGGGCCATTAGTATCTTGCAACGTCGAAGACAAAGACAGGAGGCAGCAGCATTGGCTGCAACACAAGTGGCGTTTGTACTACAACATGGACAGCATAGAGGTTTACAATTTGCAATTGCATCAACAGGACCGCCGCCCCTCACCCCTCATCCTCATCCTCATTCTCACCCTCACCCTCACCCTCACCCTCCCCCTCCCCCTCACACTGCAGTTTGA MSDHLVLYVDNLIPPAPPLQPASDLLHPQPSEALPDSPAPAPAPGPSCSTATAHDRTVETDAPNEDDPLIQVAECRICQEEDSLNNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPRSEETAIDMEGRWTIAGNPLDLRDTRLLAIAEAERHFLEADYDDYAASNDSGAAFCRSAALILLALLLLRHALTITDPDGDDDASAFFSIFMLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQHGQHRGLQFAIASTGPPPLTPHPHPHSHPHPHPHPPPPPHTAV*
BLAST of Cucsa.189560.2 vs. Swiss-Prot
Match: SUD1_ARATH (Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana GN=SUD1 PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 4.1e-10 Identity = 36/89 (40.45%), Postives = 46/89 (51.69%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. Swiss-Prot
Match: MARH3_HUMAN (E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.7e-09 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. Swiss-Prot
Match: MARH3_BOVIN (E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.7e-09 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. Swiss-Prot
Match: MARH3_RAT (E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.7e-09 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. Swiss-Prot
Match: MARH3_MOUSE (E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.7e-09 Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TrEMBL
Match: A0A0A0LN28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100580 PE=4 SV=1) HSP 1 Score: 652.9 bits (1683), Expect = 2.0e-184 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TrEMBL
Match: B9S8W6_RICCO (Membrane associated ring finger 1,8, putative OS=Ricinus communis GN=RCOM_0836410 PE=4 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 6.2e-114 Identity = 214/299 (71.57%), Postives = 234/299 (78.26%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TrEMBL
Match: A0A067L1Y9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15605 PE=4 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 2.4e-113 Identity = 218/306 (71.24%), Postives = 235/306 (76.80%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TrEMBL
Match: A0A061EI00_THECC (RING/FYVE/PHD zinc finger superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_011709 PE=4 SV=1) HSP 1 Score: 413.3 bits (1061), Expect = 2.6e-112 Identity = 214/295 (72.54%), Postives = 230/295 (77.97%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TrEMBL
Match: A0A061EB99_THECC (RING/FYVE/PHD zinc finger superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_011709 PE=4 SV=1) HSP 1 Score: 413.3 bits (1061), Expect = 2.6e-112 Identity = 214/295 (72.54%), Postives = 230/295 (77.97%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TAIR10
Match: AT3G47550.3 (AT3G47550.3 RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 325.9 bits (834), Expect = 2.8e-89 Identity = 182/307 (59.28%), Postives = 212/307 (69.06%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TAIR10
Match: AT5G62460.1 (AT5G62460.1 RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 320.5 bits (820), Expect = 1.2e-87 Identity = 165/254 (64.96%), Postives = 192/254 (75.59%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TAIR10
Match: AT1G14260.1 (AT1G14260.1 RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 280.0 bits (715), Expect = 1.7e-75 Identity = 157/273 (57.51%), Postives = 184/273 (67.40%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TAIR10
Match: AT2G02960.5 (AT2G02960.5 RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 234.2 bits (596), Expect = 1.1e-61 Identity = 122/210 (58.10%), Postives = 150/210 (71.43%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. TAIR10
Match: AT2G01275.1 (AT2G01275.1 RING/FYVE/PHD zinc finger superfamily protein) HSP 1 Score: 160.6 bits (405), Expect = 1.5e-39 Identity = 95/252 (37.70%), Postives = 134/252 (53.17%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. NCBI nr
Match: gi|449442293|ref|XP_004138916.1| (PREDICTED: uncharacterized protein LOC101203306 [Cucumis sativus]) HSP 1 Score: 652.9 bits (1683), Expect = 2.8e-184 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. NCBI nr
Match: gi|659082185|ref|XP_008441710.1| (PREDICTED: uncharacterized protein LOC103485788 [Cucumis melo]) HSP 1 Score: 551.6 bits (1420), Expect = 8.8e-154 Identity = 271/290 (93.45%), Postives = 274/290 (94.48%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. NCBI nr
Match: gi|255562860|ref|XP_002522435.1| (PREDICTED: uncharacterized protein LOC8281803 [Ricinus communis]) HSP 1 Score: 418.7 bits (1075), Expect = 8.9e-114 Identity = 214/299 (71.57%), Postives = 234/299 (78.26%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. NCBI nr
Match: gi|802566693|ref|XP_012067641.1| (PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]) HSP 1 Score: 416.8 bits (1070), Expect = 3.4e-113 Identity = 218/306 (71.24%), Postives = 235/306 (76.80%), Query Frame = 1
BLAST of Cucsa.189560.2 vs. NCBI nr
Match: gi|1021518648|ref|XP_016202802.1| (PREDICTED: uncharacterized protein LOC107643620 [Arachis ipaensis]) HSP 1 Score: 413.7 bits (1062), Expect = 2.9e-112 Identity = 219/293 (74.74%), Postives = 243/293 (82.94%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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