Cucsa.189540.3 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.189540.3
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	MYB transcription factor
Location	scaffold01305 : 356095 .. 358291 (+)
Sequence length	1292

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGATGTAACTATGTAAGTAGTACTACAAAGTAGGAAACCCCCCAAAGGCCGGCCTCCCCTTGTTTTTAGTGTAATAAAATCATGGCCGCTTCGAAGTCGAAGGTGTGCGGGAGAGGGCACTGGCGGCCGGCGGAGGACACCAAGCTGAAGGAACTGGTGGGCCTTTACGGACCGCAAAACTGGAACCTGATCGCTGAGAAACTGGAGGGAAGATCTGGAAAGAGTTGTAGATTGAGATGGTTTAACCAACTGGACCCAAGGATCAACAGAAAAGCTTTCACGGAAGAGGAAGAGGAGAGGCTAATGCAAGCTCATGAAATGTATGGTAATAAATGGGCTATGATTGCAAGGCTTTTTCCTGGACGTACAGATAATGGTGTCAAGAATCATTGGCATGTCGTAATGGCTAGAAATTGTAGACAACATTTTAGTTCTTACAGGAGATCGTCAAGGAACCTCACTCACTCACTTTCAATTGCTTCCTCTGCCCTTCCTACGCCCCcTCTTCCTCCCACTCGCTCCCTCTCACGTCCCAATCACTTGCCTTTTCATCTTCTCCCCcGACCTGGTGCGATTATTACTATTTTTCTTTCTGTCTTCTTTTtCTTAATTATCATTTTTATTCACATCATCCTATATCTTCAGATTATTGGGTTCAGACTTATTAATTTATGACTTAACATTCTTTTTGTAGCTCGTGAGAGAGTTGATTATACTTTTAGATTTCAACATGAAAAAGGGTGATTTATTTTCTTTTAACTTTTGTATTATGTTTAAACTCAAAAGGTTTTTTGAGCTATGCTATGCAAACATGTAGTCCTCTAAACTATAGCTTTTGAATTATTGCTCATGCGAAAACTTAATTGTGTTTCAAACTAATGTTTTTtATTATTATTATTATTATTTTTTAATATTTAGTGGTTGAATGTGCTACACTTGTTTTGTGAAGTCTAGTCAGATATTTAATAATTAAAATTTATTCTGTGCAATATAATATTTATTAAATAATTTCATTTATTTTTTAAAATGTTGCATAAGAGGAGTACACTTTAATTAAAATTGGAACAGTCAATTTTTATGATTTTCAGTTTCAGATATGGAGAACATTTGAATGTAAATGGGGTGACTCATCTATTGCGCAACCCAGACAGCATCCATATGCTCCTTTCACAACTTTTGTTTTTtAGTTTAAAGATGGAGTTTTCATTAGATGTTTGATGGAATAGAAACGAAGGGaTTttTTTTTTTTTTTCCTTtTtCtCATCTTTtCCTTATAATAAAATAAACTGAATATAGTGACACATGTTTTATTTTAGCTTATTAATATTAATTCTATGGCATGTTTCTCTATTTTGTTATGAAATGGTGAATGGTAATGGACACAGCAAATTATGGACAGATTCTCTTGGAATGAATTGCAGTGACGTATTCAGTTTAGTAAGAGGATTGAACTAAGACATTATTAAAATTGGATTAAATTACTTGTTGTGAGTTTCTAAGAGATATTTTGTGTACATAGGCTCAGAAACAAGCAACGAAATGGAAGTTATATCATCCTACAGCTGCAACAAAACGAGCTCAAACCATGAGAATCAAACTTGCAACAACATTCATTACTGTCCATCATATATCATGACCGAAATGCAACAAAGGAGCAACTACAGTTACAACTCTCATTGCCAGATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATATTTCAGAGGGGATGGTGGTAGTGGAACCGGTGTTTATCGACTTTCTAGGAGTAGGAGGCAGATGAAAGGGTCCAAGGGAAAAAAaGAAAAGGGTGGCTTCATCTTTATTATCATTATTTTTTtGGTTGCAAATTGCAATCATCAGAAGTGGCCTGAATGCGGGTGTGGTCCAGAGATTTGGAAGAGGCCATAACAAGTAATTGAGAGCAAAAGTAAAGAGGAGATGATTTGAGTTGGACTGTAGGAGTGGTGAAAAGATATGGCAGTCAGTGCCATTGAAAGCGCTTTATGAATATATATATAAATCCCAAAACTCAAACCATCATTTTCTTCTTTTTCTGCACATAATGAATGTGATGGCCAGTGGCTTATATTCCCAAGATTATCCATTTCTTACACTGCTCTTTACTTTTGATATCACCCATTTCACTCCC

mRNA sequence

TGGATGTAACTATGTAAGTAGTACTACAAAGTAGGAAACCCCCCAAAGGCCGGCCTCCCCTTGTTTTTAGTGTAATAAAATCATGGCCGCTTCGAAGTCGAAGGTGTGCGGGAGAGGGCACTGGCGGCCGGCGGAGGACACCAAGCTGAAGGAACTGGTGGGCCTTTACGGACCGCAAAACTGGAACCTGATCGCTGAGAAACTGGAGGGAAGATCTGGAAAGAGTTGTAGATTGAGATGGTTTAACCAACTGGACCCAAGGATCAACAGAAAAGCTTTCACGGAAGAGGAAGAGGAGAGGCTAATGCAAGCTCATGAAATGTATGGTAATAAATGGGCTATGATTGCAAGGCTTTTTCCTGGACGTACAGATAATGGTGTCAAGAATCATTGGCATGTCGTAATGGCTAGAAATTGTAGACAACATTTTAGTTCTTACAGGAGATCGTCAAGGAACCTCACTCACTCACTTTCAATTGCTTCCTCTGCCCTTCCTACGCCCCCTCTTCCTCCCACTCGCTCCCTCTCACGTCCCAATCACTTGCCTTTTCATCTTCTCCCCCGACCTGCTCGTGAGAGAGTTGATTATACTTTTAGATTTCAACATGAAAAAGGGCTCAGAAACAAGCAACGAAATGGAAGTTATATCATCCTACAGCTGCAACAAAACGAGCTCAAACCATGAGAATCAAACTTGCAACAACATTCATTACTGTCCATCATATATCATGACCGAAATGCAACAAAGGAGCAACTACAGTTACAACTCTCATTGCCAGATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATATTTCAGAGGGGATGGTGGTAGTGGAACCGGTGTTTATCGACTTTCTAGGAGTAGGAGGCAGATGAAAGGGTCCAAGGGAAAAAAAGAAAAGGGTGGCTTCATCTTTATTATCATTATTTTTTTGGTTGCAAATTGCAATCATCAGAAGTGGCCTGAATGCGGGTGTGGTCCAGAGATTTGGAAGAGGCCATAACAAGTAATTGAGAGCAAAAGTAAAGAGGAGATGATTTGAGTTGGACTGTAGGAGTGGTGAAAAGATATGGCAGTCAGTGCCATTGAAAGCGCTTTATGAATATATATATAAATCCCAAAACTCAAACCATCATTTTCTTCTTTTTCTGCACATAATGAATGTGATGGCCAGTGGCTTATATTCCCAAGATTATCCATTTCTTACACTGCTCTTTACTTTTGATATCACCCATTTCACTCCC

Coding sequence (CDS)

ATGGCCGCTTCGAAGTCGAAGGTGTGCGGGAGAGGGCACTGGCGGCCGGCGGAGGACACCAAGCTGAAGGAACTGGTGGGCCTTTACGGACCGCAAAACTGGAACCTGATCGCTGAGAAACTGGAGGGAAGATCTGGAAAGAGTTGTAGATTGAGATGGTTTAACCAACTGGACCCAAGGATCAACAGAAAAGCTTTCACGGAAGAGGAAGAGGAGAGGCTAATGCAAGCTCATGAAATGTATGGTAATAAATGGGCTATGATTGCAAGGCTTTTTCCTGGACGTACAGATAATGGTGTCAAGAATCATTGGCATGTCGTAATGGCTAGAAATTGTAGACAACATTTTAGTTCTTACAGGAGATCGTCAAGGAACCTCACTCACTCACTTTCAATTGCTTCCTCTGCCCTTCCTACGCCCCcTCTTCCTCCCACTCGCTCCCTCTCACGTCCCAATCACTTGCCTTTTCATCTTCTCCCCcGACCTGCTCGTGAGAGAGTTGATTATACTTTTAGATTTCAACATGAAAAAGGGCTCAGAAACAAGCAACGAAATGGAAGTTATATCATCCTACAGCTGCAACAAAACGAGCTCAAACCATGA

Protein sequence

MAASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRSSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFHLLPRPARERVDYTFRFQHEKGLRNKQRNGSYIILQLQQNELKP*

Homology

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BLAST of Cucsa.189540.3 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 1


Query: 11  RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEEE 70
           +G W P ED +L+ LV  YGP+NW +I++ + GRSGKSCRLRW NQL P++  + F+ EE
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 71  EERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNC 113
           +E + +AH  +GNKWA IARL  GRTDN VKNHW+  + R C
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKC 107

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BLAST of Cucsa.189540.3 vs. Swiss-Prot
Match: MYB_CHICK (Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.8e-28
Identity = 73/222 (32.88%), Postives = 111/222 (50.00%), Query Frame = 1


Query: 11  RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEEE 70
           +G W   ED ++ ELV  YGP+ W++IA+ L+GR GK CR RW N L+P + + ++TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 71  EERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRSSRNL---- 130
           +  + QAH+  GN+WA IA+L PGRTDN +KNHW+  M R   Q       S   L    
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKAGLPSAT 211

Query: 131 ------THSLSIASSALPTPPLP-----------PTRSLSRPNHLPFHL----------- 190
                 +H ++ A +  P  PLP           P   ++ P ++P  +           
Sbjct: 212 TGFQKSSHLMAFAHNP-PAGPLPGAGQAPLGSDYPYYHIAEPQNVPGQIPYPVALHVNIV 271

Query: 191 -LPRPARERVDYTFRFQHEKGLRNKQRNGSYIILQLQQNELK 200
            +P+PA   +     +  E   + K+     ++L   +NELK
Sbjct: 272 NVPQPAAAAIQR--HYNDEDPEKEKRIKELELLLMSTENELK 310

HSP 2 Score: 72.4 bits (176), Expect = 6.3e-12
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 10  GRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEE 69
           G+  W   ED KLK+LV   G ++W +IA  L  R+   C+ RW   L+P + +  +T+E
Sbjct: 39  GKTRWTREEDEKLKKLVEQNGTEDWKVIASFLPNRTDVQCQHRWQKVLNPELIKGPWTKE 98

Query: 70  EEERLMQAHEMYGNK-WAMIARLFPGRTDNGVKNHWH 106
           E++R+++  + YG K W++IA+   GR     +  WH
Sbjct: 99  EDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWH 135

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BLAST of Cucsa.189540.3 vs. Swiss-Prot
Match: MYB_BOVIN (Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 64/156 (41.03%), Postives = 90/156 (57.69%), Query Frame = 1


Query: 11  RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEEE 70
           +G W   ED ++ ELV  YGP+ W++IA+ L+GR GK CR RW N L+P + + ++TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 71  EERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQH---FSSYRRSSRNLT 130
           +  + QAH+  GN+WA IA+L PGRTDN +KNHW+  M R   Q      S + S   +T
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPAVT 211

Query: 131 HSLSIAS------SALPTPPLPPTRSLSRPNHLPFH 158
            S    S       A P+  LPP    S  +  P++
Sbjct: 212 TSFQKNSHLMGFTHAPPSAQLPPAGQPSVNSDYPYY 247

HSP 2 Score: 72.0 bits (175), Expect = 8.3e-12
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 10  GRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEE 69
           G+  W   ED KLK+LV   G  +W +IA  L  R+   C+ RW   L+P + +  +T+E
Sbjct: 39  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 98

Query: 70  EEERLMQAHEMYGNK-WAMIARLFPGRTDNGVKNHWH 106
           E++R+++  + YG K W++IA+   GR     +  WH
Sbjct: 99  EDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWH 135

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BLAST of Cucsa.189540.3 vs. Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-27
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 1


Query: 11  RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEEE 70
           +G W   ED ++ ELV  YGP+ W+LIA+ L+GR GK CR RW N L+P + + ++TEEE
Sbjct: 87  KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 146

Query: 71  EERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQH-----FSSYRRSSRN 130
           +  + +AH+  GN+WA IA+L PGRTDN +KNHW+  M R   Q           RSS  
Sbjct: 147 DRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEGYLQDGIKSERSSSK 206

Query: 131 LTHSLSIASSALPT 140
           L H    A   + T
Sbjct: 207 LQHKPCAAMDHMQT 220

HSP 2 Score: 76.6 bits (187), Expect = 3.4e-13
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1


Query: 7   KVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAF 66
           K+  R  W   ED KLK+LV  +G  +W LIA  L+ RS   C+ RW   L+P + +  +
Sbjct: 31  KLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASHLQNRSDFQCQHRWQKVLNPELIKGPW 90

Query: 67  TEEEEERLMQAHEMYGNK-WAMIARLFPGRTDNGVKNHWH 106
           T+EE++R+++  + YG K W++IA+   GR     +  WH
Sbjct: 91  TKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWH 130

[Close]

BLAST of Cucsa.189540.3 vs. Swiss-Prot
Match: MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-27
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1


Query: 11  RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEEE 70
           +G W   ED ++ ELV  YGP+ W++IA+ L+GR GK CR RW N L+P + + ++TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 71  EERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQH---FSSYRRSSRNLT 130
           +  + QAH+  GN+WA IA+L PGRTDN +KNHW+  M R   Q      S + S   + 
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPAVA 211

Query: 131 HSLSIASSALPTPPLPPTRSL 149
            S    S  +     PPT  L
Sbjct: 212 TSFQKNSHLMGFAQAPPTAQL 232

HSP 2 Score: 72.0 bits (175), Expect = 8.3e-12
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 10  GRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFTEE 69
           G+  W   ED KLK+LV   G  +W +IA  L  R+   C+ RW   L+P + +  +T+E
Sbjct: 39  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 98

Query: 70  EEERLMQAHEMYGNK-WAMIARLFPGRTDNGVKNHWH 106
           E++R+++  + YG K W++IA+   GR     +  WH
Sbjct: 99  EDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWH 135

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BLAST of Cucsa.189540.3 vs. TrEMBL
Match: A0A0A0LHV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.9e-92
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 1


Query: 1   MAASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 60
           MAASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR
Sbjct: 1   MAASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 60

Query: 61  INRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYR 120
           INRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYR
Sbjct: 61  INRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYR 120

Query: 121 RSSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFHLLPRPARE 166
           RSSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFHLLPRP  E
Sbjct: 121 RSSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFHLLPRPGSE 165

[Close]

BLAST of Cucsa.189540.3 vs. TrEMBL
Match: D9ZJ60_MALDO (MYB domain class transcription factor OS=Malus domestica GN=MYB32 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.3e-59
Identity = 111/156 (71.15%), Postives = 126/156 (80.77%), Query Frame = 1


Query: 3   ASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 62
           + +SK+C RGHWRPAED+KLKELV LYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN
Sbjct: 29  SGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 88

Query: 63  RKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRS 122
           R+AFTEEEEERLMQAH +YGNKWAMIARLFPGRTDN VKNHWHV+MAR  R+  S+YRR 
Sbjct: 89  RRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRR 148

Query: 123 S------RNLTHSLSIASSALPTPPLPPTRSLSRPN 153
                  R++  + S  +++  T P PP   LS PN
Sbjct: 149 KLNQTVYRSMEENPSFNAASRSTEPPPPYNGLSLPN 184

[Close]

BLAST of Cucsa.189540.3 vs. TrEMBL
Match: A0A078ILC5_BRANA (BnaC05g51000D protein OS=Brassica napus GN=BnaC05g51000D PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.0e-57
Identity = 109/156 (69.87%), Postives = 121/156 (77.56%), Query Frame = 1


Query: 2   AASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 61
           ++SK  V GRGHWRPAED KLKELV +YGPQNWNLIAEKL+GRSGKSCRLRWFNQLDPRI
Sbjct: 78  SSSKPSVLGRGHWRPAEDVKLKELVAIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRI 137

Query: 62  NRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRR 121
           NR+AFTEEEEERLMQAH +YGNKWAMIARLFPGRTDN VKNHWHV+MAR  R+H S+YRR
Sbjct: 138 NRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKYREHSSAYRR 197

Query: 122 SSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFH 158
               + + L       P+P  P   S       PFH
Sbjct: 198 RKLIINNPLKPHLPNHPSPNCPSFISTKHYFTRPFH 233

[Close]

BLAST of Cucsa.189540.3 vs. TrEMBL
Match: A0A059BGH3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02492 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.5e-57
Identity = 112/168 (66.67%), Postives = 126/168 (75.00%), Query Frame = 1


Query: 2   AASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 61
           A  +SK+C RGHWRPAEDTKLKELV LYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI
Sbjct: 58  AGGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 117

Query: 62  NRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRR 121
           NR+AFTEEEEERLMQAH +YGNKWAMIARLFPGRTDN VKNHWHV+MAR  R+  ++YRR
Sbjct: 118 NRRAFTEEEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTAYRR 177

Query: 122 SSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFHLLPRPARERVDY 170
              +L+ S              P+   +RP+       P   R+R DY
Sbjct: 178 RKLSLSRS--------------PSSGYARPDE-----TPAGHRDRDDY 206

[Close]

BLAST of Cucsa.189540.3 vs. TrEMBL
Match: A0A078IAW0_BRANA (BnaA08g19860D protein OS=Brassica napus GN=BnaA08g19860D PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.5e-57
Identity = 111/168 (66.07%), Postives = 125/168 (74.40%), Query Frame = 1


Query: 2   AASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 61
           ++SK  V GRGHWRPAED KLKELV +YGPQNWNLIAEKL+GRSGKSCRLRWFNQLDPRI
Sbjct: 85  SSSKPSVLGRGHWRPAEDVKLKELVAIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRI 144

Query: 62  NRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRR 121
           NR+AFTE+EEERLMQAH +YGNKWAMIARLFPGRTDN VKNHWHV+MAR  R+H S+YRR
Sbjct: 145 NRRAFTEDEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKYREHSSAYRR 204

Query: 122 SSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPF----HLLPRPARE 166
               + + L    S  P+P          PNH  F    H   +P  E
Sbjct: 205 RKLMINNPLKPQLSNHPSP---------NPNHHSFISTHHYFTQPFHE 243

[Close]

BLAST of Cucsa.189540.3 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117)

HSP 1 Score: 225.3 bits (573), Expect = 3.3e-59
Identity = 102/120 (85.00%), Postives = 110/120 (91.67%), Query Frame = 1


Query: 2   AASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 61
           ++SK  V GRGHWRPAED KLKELV +YGPQNWNLIAEKL+GRSGKSCRLRWFNQLDPRI
Sbjct: 89  SSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRI 148

Query: 62  NRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRR 121
           NR+AFTEEEEERLMQAH +YGNKWAMIARLFPGRTDN VKNHWHVVMAR  R+H S+YRR
Sbjct: 149 NRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRR 208

[Close]

BLAST of Cucsa.189540.3 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 218.4 bits (555), Expect = 4.0e-57
Identity = 101/119 (84.87%), Postives = 109/119 (91.60%), Query Frame = 1


Query: 3   ASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 62
           +SK+ V  RGHWRPAEDTKLKELV +YGPQNWNLIAEKL+GRSGKSCRLRWFNQLDPRIN
Sbjct: 100 SSKASV-SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRIN 159

Query: 63  RKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRR 122
           R+AFTEEEEERLMQAH +YGNKWAMIARLFPGRTDN VKNHWHV+MAR  R+  SSYRR
Sbjct: 160 RRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRR 217

[Close]

BLAST of Cucsa.189540.3 vs. TAIR10
Match: AT5G17800.1 (AT5G17800.1 myb domain protein 56)

HSP 1 Score: 191.4 bits (485), Expect = 5.3e-49
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 1


Query: 6   SKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKA 65
           +KVC RGHWRP ED KLKELV  +GPQNWNLI+  L GRSGKSCRLRWFNQLDPRIN++A
Sbjct: 88  TKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKRA 147

Query: 66  FTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQ 115
           FTEEEE RL+ AH  YGNKWA+I+RLFPGRTDN VKNHWHV+MAR  R+
Sbjct: 148 FTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE 196

[Close]

BLAST of Cucsa.189540.3 vs. TAIR10
Match: AT3G29020.2 (AT3G29020.2 myb domain protein 110)

HSP 1 Score: 191.4 bits (485), Expect = 5.3e-49
Identity = 85/125 (68.00%), Postives = 102/125 (81.60%), Query Frame = 1


Query: 4   SKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINR 63
           S S+VC RGHWR +EDT+L ELV +YGPQNWN IAE ++GR+GKSCRLRWFNQLDPRIN+
Sbjct: 60  SVSRVCSRGHWRISEDTQLMELVSVYGPQNWNHIAESMQGRTGKSCRLRWFNQLDPRINK 119

Query: 64  KAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRSS 123
           +AF++EEEERL+ AH  +GNKWAMIA+LF GRTDN +KNHWHV+MAR  RQ  SSY +  
Sbjct: 120 RAFSDEEEERLLAAHRAFGNKWAMIAKLFNGRTDNALKNHWHVLMARKMRQQSSSYVQRF 179

Query: 124 RNLTH 129
               H
Sbjct: 180 NGSAH 184

[Close]

BLAST of Cucsa.189540.3 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 189.1 bits (479), Expect = 2.6e-48
Identity = 89/128 (69.53%), Postives = 102/128 (79.69%), Query Frame = 1


Query: 8   VCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRKAFT 67
           +C RGHWRPAED KLK+LV  YGP NWN IA KL GRSGKSCRLRWFNQLDPRINR  FT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 68  EEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRSSRNLT 127
           EEEEERL+ AH ++GN+W++IARLFPGRTDN VKNHWHV+MAR  RQ  +S  R   + T
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQ--TSKPRLLPSTT 122

Query: 128 HSLSIASS 136
            S S+ +S
Sbjct: 123 SSSSLMAS 128

[Close]

BLAST of Cucsa.189540.3 vs. NCBI nr
Match: gi|449442435|ref|XP_004138987.1| (PREDICTED: transcription factor MYB44 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 2.8e-92
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 1


Query: 1   MAASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 60
           MAASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR
Sbjct: 1   MAASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 60

Query: 61  INRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYR 120
           INRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYR
Sbjct: 61  INRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYR 120

Query: 121 RSSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFHLLPRPARE 166
           RSSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFHLLPRP  E
Sbjct: 121 RSSRNLTHSLSIASSALPTPPLPPTRSLSRPNHLPFHLLPRPGSE 165

[Close]

BLAST of Cucsa.189540.3 vs. NCBI nr
Match: gi|659082191|ref|XP_008441713.1| (PREDICTED: transcription factor MYB44 [Cucumis melo])

HSP 1 Score: 323.6 bits (828), Expect = 2.5e-85
Identity = 154/166 (92.77%), Postives = 157/166 (94.58%), Query Frame = 1


Query: 1   MAASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 60
           M  SKSKVCGRGHWRP EDTKLKELVGLYGPQNWNLIA+KLEGRSGKSCRLRWFNQLDPR
Sbjct: 1   MPGSKSKVCGRGHWRPPEDTKLKELVGLYGPQNWNLIAQKLEGRSGKSCRLRWFNQLDPR 60

Query: 61  INRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYR 120
           INRKAF+EEEEERLMQAHE+YGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYR
Sbjct: 61  INRKAFSEEEEERLMQAHEIYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYR 120

Query: 121 RSSRNLTHSLSIASSALPTPPLPPT-RSLSRPNHLPFHLLPRPARE 166
           RSSRNL HSLSIASSALPTP L PT RSLSRPNHLPFHLLPRP  E
Sbjct: 121 RSSRNLAHSLSIASSALPTPSLLPTARSLSRPNHLPFHLLPRPGSE 166

[Close]

BLAST of Cucsa.189540.3 vs. NCBI nr
Match: gi|302398937|gb|ADL36763.1| (MYB domain class transcription factor [Malus domestica])

HSP 1 Score: 235.3 bits (599), Expect = 9.0e-59
Identity = 111/156 (71.15%), Postives = 126/156 (80.77%), Query Frame = 1


Query: 3   ASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 62
           + +SK+C RGHWRPAED+KLKELV LYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN
Sbjct: 29  SGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 88

Query: 63  RKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRS 122
           R+AFTEEEEERLMQAH +YGNKWAMIARLFPGRTDN VKNHWHV+MAR  R+  S+YRR 
Sbjct: 89  RRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRR 148

Query: 123 S------RNLTHSLSIASSALPTPPLPPTRSLSRPN 153
                  R++  + S  +++  T P PP   LS PN
Sbjct: 149 KLNQTVYRSMEENPSFNAASRSTEPPPPYNGLSLPN 184

[Close]

BLAST of Cucsa.189540.3 vs. NCBI nr
Match: gi|657994306|ref|XP_008389457.1| (PREDICTED: myb-related protein Hv33-like [Malus domestica])

HSP 1 Score: 235.3 bits (599), Expect = 9.0e-59
Identity = 111/156 (71.15%), Postives = 126/156 (80.77%), Query Frame = 1


Query: 3   ASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 62
           + +SK+C RGHWRPAED+KLKELV LYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN
Sbjct: 121 SGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 180

Query: 63  RKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRS 122
           R+AFTEEEEERLMQAH +YGNKWAMIARLFPGRTDN VKNHWHV+MAR  R+  S+YRR 
Sbjct: 181 RRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRR 240

Query: 123 S------RNLTHSLSIASSALPTPPLPPTRSLSRPN 153
                  R++  + S  +++  T P PP   LS PN
Sbjct: 241 KLNQTVYRSMEENPSFNAASRSTEPPPPYNGLSLPN 276

[Close]

BLAST of Cucsa.189540.3 vs. NCBI nr
Match: gi|694361131|ref|XP_009360326.1| (PREDICTED: transcription factor MYB108-like [Pyrus x bretschneideri])

HSP 1 Score: 233.4 bits (594), Expect = 3.4e-58
Identity = 112/155 (72.26%), Postives = 124/155 (80.00%), Query Frame = 1


Query: 3   ASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 62
           + +SK+C RGHWRPAED+KLKELV LYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN
Sbjct: 29  SGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 88

Query: 63  RKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRS 122
           R+AFTEEEEERLMQ H +YGNKWAMIARLFPGRTDN VKNHWHV+MAR  R+  S+YRR 
Sbjct: 89  RRAFTEEEEERLMQTHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRR 148

Query: 123 SRNLTHSLSIA-----SSALPTPPLPPTRSLSRPN 153
             N T   S+      ++A  T P PP   LS PN
Sbjct: 149 KLNQTVYRSMEENPSFNAASSTEPPPPYGGLSLPN 183

The following BLAST results are available for this feature:

BLAST of Cucsa.189540.3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB44_ARATH	1.4e-30	54.90	Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1	[more]
MYB_CHICK	4.8e-28	32.88	Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=1 SV=1	[more]
MYB_BOVIN	1.1e-27	41.03	Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1	[more]
MYBA_HUMAN	1.8e-27	44.03	Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2	[more]
MYB_HUMAN	1.8e-27	42.55	Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2	[more]

BLAST of Cucsa.189540.3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHV6_CUCSA	1.9e-92	98.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1	[more]
D9ZJ60_MALDO	6.3e-59	71.15	MYB domain class transcription factor OS=Malus domestica GN=MYB32 PE=2 SV=1	[more]
A0A078ILC5_BRANA	2.0e-57	69.87	BnaC05g51000D protein OS=Brassica napus GN=BnaC05g51000D PE=4 SV=1	[more]
A0A059BGH3_EUCGR	3.5e-57	66.67	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02492 PE=4 SV=1	[more]
A0A078IAW0_BRANA	4.5e-57	66.07	BnaA08g19860D protein OS=Brassica napus GN=BnaA08g19860D PE=4 SV=1	[more]

BLAST of Cucsa.189540.3 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26780.2	3.3e-59	85.00	myb domain protein 117	[more]
AT1G69560.1	4.0e-57	84.87	myb domain protein 105	[more]
AT5G17800.1	5.3e-49	77.06	myb domain protein 56	[more]
AT3G29020.2	5.3e-49	68.00	myb domain protein 110	[more]
AT1G73410.1	2.6e-48	69.53	myb domain protein 54	[more]

BLAST of Cucsa.189540.3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442435\|ref\|XP_004138987.1\|	2.8e-92	98.79	PREDICTED: transcription factor MYB44 [Cucumis sativus]	[more]
gi\|659082191\|ref\|XP_008441713.1\|	2.5e-85	92.77	PREDICTED: transcription factor MYB44 [Cucumis melo]	[more]
gi\|302398937\|gb\|ADL36763.1\|	9.0e-59	71.15	MYB domain class transcription factor [Malus domestica]	[more]
gi\|657994306\|ref\|XP_008389457.1\|	9.0e-59	71.15	PREDICTED: myb-related protein Hv33-like [Malus domestica]	[more]
gi\|694361131\|ref\|XP_009360326.1\|	3.4e-58	72.26	PREDICTED: transcription factor MYB108-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.189540	Cucsa.189540	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.189540.3	Cucsa.189540.3-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.189540.3.five_prime_UTR.1	Cucsa.189540.3.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.189540.3.CDS.1	Cucsa.189540.3.CDS.1	CDS
Cucsa.189540.3.CDS.2	Cucsa.189540.3.CDS.2	CDS
Cucsa.189540.3.CDS.3	Cucsa.189540.3.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.189540.3.three_prime_UTR.1	Cucsa.189540.3.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 11..56 score: 1.8E-15coord: 63..106 score: 3.4
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 10..59 score: 1.7E-13coord: 62..110 score: 7.6
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 12..64 score: 7.7E-26coord: 65..111 score: 3.7
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 11..104 score: 1.12
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 6..57 score: 17.236coord: 58..112 score: 26
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 11..155 score: 1.8
None	No IPR available	PANTHER	PTHR10641:SF473	MYB TRANSCRIPTION FACTOR	coord: 11..155 score: 1.8