Cucsa.181840.4 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.181840.4
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Arginine/serine-rich splicing factor, putative
Location	scaffold01251 : 81403 .. 86255 (-)
Sequence length	1477

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAGAATCATCTCTTCTGTTTTTTTCTTCTTTCTTGCCCTTATAATAATCAGGTACCCATTTCTCTGTTTTGAATTTTCATTTCTTTTTGGAATTTTTGTTCTTTGATTCTTGATAGAAGAAAGAAGAAAATTAGAAAAGAAGAAAGAAGAAGAAGATCTCGTCATCTTTGTATGTTGATTTTCTTTTTCATTACAATTTTGTCTTAATTTTGATAGCCATGGTGATGATTGATGACTATGATCATGGCTCAATAGGTTATTCTTCTTCATCCCTTTTTAAATCTGTATATTGTTCTTTTTCTATCTTTGTGATGCGATTTTTGTAACATTTGTTCTTATCTTTTTCAAGATTTTGTATTTGTTGTTCACATCAAAGGAGAATATGAGCAGCAGAAACAGTCGTACCATCTATGTTGGGAATCTTCCTGGTGACATTCGTCTGAGAGAAGTAGAAGATCTGTTCTACAAGGTTTGAAATTTTAGTTCTTGATAATTTTAAACTTCTTGTTGTTGTCTTGAGATGAGTAATTCTAGTATAATTGCAGTATGGACCCATTGTTGATATTGATTTGAAGATTCCACCACGACCACCGGGCTATGCTTTTGTTGAGGTGAGATTTAAATTTTGGAATATTTGGAACCCTGTTTCTAATTCTACGACCCTCAAATTGTGTTTTAGAGTTTTGGGTATTCAAAGAAGCTAAGTAGTTGCACTGAGCTGTTAGTGGTCCTTATGGAAAAACTCTTTGCTTTTCAGTTTGAAGATGTTCGTGATGCTGAAGATGCCATTTATGGCCGAGATGGGTATAAGTTTGATGGATGTCGATTGCGGGTACTAGTTGCTACGCGGGCTTGCTGATATTACTTGCCTGTGATGTCTTGTCCACATATCTGAATATAATTTTGAAATGCTTGCTTTGTAGGTGGAATTTGCACATGGTGGAAGGGGACATTCTTCTTCTGTGGATCGTTACAGTCGTAGTGGAAGTAGTCGTGGTGGTGTTCCTCGCCGAACTGACTATCGGGGTGTGTATTTTATCACTTTTTTATTTTGTGAAAGTCCGATTATAGTTTTGTGATGATATTTTGTTGTGCAGTTTTGGTTACTGGATTACCTTCTTCTGCTTCATGGCAAGACCTGAAGGTAAGCACGCTATTTCTGTTTCTGAAAATGGCATGCTACTGTAGTAAGTTGTCTATTTCTTTTCTCGATCATAGCATCTTTGTCGATTAGAGAGAACGGATTAGAGAGAACGAATTAGTGTATGGCTCCACCCTTTCTATTAATTGAGAGTTTGCTATGTGAATTTGATAATATTCAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAGGTTTTCCGTGATCGTGGTGGTATGCCTTATTAACTTATTTCTCTTTCTATTTGCTCTTACATCTGTCTCTGTGCAAGTGTCATTTAAACACATGTTTTTTTTTTCAATATATTTGAAATGTATGTGCATGTTTGGACTTTGGACAGCTTCATTGCAGATTGATATTAGTATTGCAGTATTAACCTCCGTATTATTTTTTTCTATGAAAAAAATATCCTTGTTTTTAGATTACCTTCTTGCCACTATTTAGATTACCTTCTTGCCACATTCTATTTCATAAAGAATGTGAATTAATGAACACAGTAGGCTGGTTGAAAAGGTTCTTTAAGACATGTTAGAGATGAGGTTGATAGGTCTGAAATCCCCAACTTGAACAAGTACCTGGGGTAAGACAAATAGATTCTTCATGTCTTGGTCAACAAGACCTTTCATAGAGCTCTCTGAATACATAACTCTAGTCCCAAATCTCCATGGTGAAGTCCAAATTGGCCATTGCACCAAGTTGTTTATGCCCTGTCATGTTTTTTCTTTATTTATTTTTTAGTTCTACCTTGTGGTTGATATTGTATACATTTGAGTGTTTTCAGTCTCACGCTTGTTTCAGTTTTGTGTATATTTTCTTCATTTCTTGTATTCTATAAATCATGCTTAGTGGTGCTGAAAACCATTTTTTAAAGAATAATTTTTATGTAAATCTGTGCAGGGATGGCAGGAATAGTTGATTATACAAACTATGATGACATGAAATATGCTGTAAGTTGCACTTTAGATGGCTCGACTCTCGATGTTTTTCTGGAAGATTTGGTTCATGTTTAATATTGACAGTCTCTGACTCTGTTTTGGACTTTGTGTTCCTGCGATAATTTATTTTAATTATGTTTATAATTTTTTATCTGGCTGCAGATTAGAAAACTTGATGATTCTGAATTTCGGAATGCCTTTTCTCGAGCATATGTACGGGTACGTTGTCCGGAGTATGTGGACTGGAAGTTGTTTATATATTCTACTAAATTCTATTTTGTTGTCATTATTTTTTCAAATAAAAATGTGTACCTATTCACTCAGGTGAAGGAATATGACTCTAGACACAGCTACTCCAGGAGTCCATCTCTTGATTCTAGACGAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCATACAGGGGAAGAGGCCGGAGTCAGAGCCGAAGCAGAAGTCGAAGCCGTAGCCGTAGCCGTAGTTATAGCGGCAGGAGCACTAGGTATGTTTTAGTATTCTTGCAAAATAAAGACTTATATGTCGAATCATGAAGACTAGTATGATGTGACAATTTGTTTTGCAGTCTATCTCCAAGGCACAAGCACTCTCGTCGATCACGATCGGTTTCTGAACAATCCCTATCAAGGTTTGCTTTCATCCCACACACACATCATTCAATTTTCCATTCCAAGAACAGTGTCTGAATTTTCGTTGCTGTTGTTTTGGTGCTATTCATTTTAAACGACGTCGATTTTTTAACCGTCCCTATCAAAGTTTGCACACATTGATCAAGATGTGGGGAGAACGTGATTTTTGTATCTCTTCAATATGAATATTGTGTTGAATGCTCACTAATGTATTACATTGTGCACACCGAGTTCCTTTTCTTTTATGCGTTCACATCTTTTCTCCATGTTAAGAAAAAAGATACAAGGGACTTTTTGACTACCTTATCTGTTTCTTCTTGAGACCACACAATATCTATTTCTTGGCTTTTCATCTTTTGAAATGTTCTGACATTCAGATTTTGGAAATGAGAAGTGTTATGAAGTGTATCTATGTAAGTGTGCGTACTTGGTTTTTCTTTCTTCTTTCTTTGAACATAAAATGAGAATAGTTGCTGTATGCTTTTTGTTCTCTCTTTTTATGTAAAAGCAGGAAAGAAATAAGAACTACTAAAAGGCAACTGATTCAGCTCTAAAGCTTTTCTAGACATACATGGTTTAGTTGAATCTGCTGGTAGACATTGGCTTTTATGCAAAGAATGTTGAATTTTGTTTTGGTTTTCAAGCATTCTAAAAGGACAAACGTATTAACCTTCTTGAGAATCCCTTAGCGAGACTTCAACCATGCACTTGTATAATTGTCATGATTCACTTAGCAATTGTTTTCTTATGATGTCGCTCCAATAAACAAACACTGTTCAACTTCACTCCGGAAGTGGTGGAAGAAAGCATAAAAAACAAACAAGAAAGCATAAAAAACAAACAAGTATTTTTTTTTCCTTTGGATATGCTCGGGCCTCCAGTTAACAAAATAGAGGTTTGTCAGTTTGGGAAGTCATCATTGTTTGTTTATGTTTTGCTAGATATGGGCTTTTGCGGAATAGTTGGGACTTCATGTTAGGGACTTGAGGGATGTGGTGCTCAATGTGCTTCTTTCAACTCTTTGGTTGTTGAGGTAATACAGTTTCGTTGATGAGCACCCTGTCAACCTCGACGCTGATATTCTTTTCCCTTTTTCATGATTTCCCAATTGTTGCTAACGCTTGTGGAAAAGCCTGTTTAGTAGTACTCTTGTTCGGCCAGTTGATAATTACTTATCTAAAACTTTCAGACACATCAATTCTACGTTACTTTGAATGTTCTTCGTCTTTGCTCTCACCCTGGTCTGCTACTGACTGTTTATTCGCTTGAACTCTATTCTTCTATTCACCTGTTTGATATGACTGAAGACTGAGTTGAGATTAGAAACTGGTCTTCGATGTGGTGTTATTGTTGAATGTGGATTTTATCATTTTGACTTCAGCTGCAGACCCAGACTTTGCTTATGGGTACTTTAAGTCCCTTGTTTCCTGTTTTCAGGTCTAGGTCAAGGTCACGATCGAGATCAAGATCACGGTCACGATCACCAGTTTCATCTGTGAGTAGAAAATTGAATATATTATCCCCCCCTCCCCTTCCTCTGGTTTTCCTTCTCTCATGTTTCTCATTGTCTCATTGATTGCAGCGTCATCGTGCAAGCAGACCTCGAAGTCGGAGCAGATCTCGGTCCAAGTCTAGATCCCTTTCACCGAATGTAATATCCTGATAGACTTTGCATGTTCCTCAAAACATGAATAACGTATGGCTTCTGTTAGTTTCTACGAGGAAGTAATATTGACCGAGTTTTGACATAAGCAGGTGAGATCCGATCGAAGCCGAAGCCAATCTGTTGATTCCAGGGACCAATATTCAGAATAGGACATTGCTGTGAGGCTGCTCTCAGATGGAACAGTAAAAGCGTAGGAGAAAAGTAGGGAATGGTATATTTGGAGGGTTCACTTTTAATGTAAAATGTGTTATGGATGACCTTTATTAACCCAAGCCATGTTGCTGCATTGTATGTCGACACATGCTTCGGTTATTTCACTTTTAACGTTCTCTGTTCTTCCACCTTCGAGTATATTTCGTTACTATTACATATTCTCTGATGACTAGTTTTTGTTTCATGTATTTTTCTTTAAAGCAGTTATCAAGTCTTACATTATC

mRNA sequence

TTCAAGAATCATCTCTTCTGTTTTTTTCTTCTTTCTTGCCCTTATAATAATCAGCCATGGTGATGATTGATGACTATGATCATGGCTCAATAGGTTATTCTTCTTCATCCCTTTTTAAATCTGTATATTGTTCTTTTTCTATCTTTGTGATGCGATTTTTGTAACATTTGTTCTTATCTTTTTCAAGATTTTGTATTTGTTGTTCACATCAAAGGAGAATATGAGCAGCAGAAACAGTCGTACCATCTATGTTGGGAATCTTCCTGGTGACATTCGTCTGAGAGAAGTAGAAGATCTGTTCTACAAGTATGGACCCATTGTTGATATTGATTTGAAGATTCCACCACGACCACCGGGCTATGCTTTTGTTGAGTTTGAAGATGTTCGTGATGCTGAAGATGCCATTTATGGCCGAGATGGGTATAAGTTTGATGGATGTCGATTGCGGGTGGAATTTGCACATGGTGGAAGGGGACATTCTTCTTCTGTGGATCGTTACAGTCGTAGTGGAAGTAGTCGTGGTGGTGTTCCTCGCCGAACTGACTATCGGGTTTTGGTTACTGGATTACCTTCTTCTGCTTCATGGCAAGACCTGAAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAGGTTTTCCGTGATCGTGGTGGGATGGCAGGAATAGTTGATTATACAAACTATGATGACATGAAATATGCTATTAGAAAACTTGATGATTCTGAATTTCGGAATGCCTTTTCTCGAGCATATGTACGGGTGAAGGAATATGACTCTAGACACAGCTACTCCAGGAGTCCATCTCTTGATTCTAGACGAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCATACAGGGGAAGAGGCCGGAGTCAGAGCCGAAGCAGAAGTCGAAGCCGTAGCCGTAGCCGTAGTTATAGCGGCAGGAGCACTAGTCTATCTCCAAGGCACAAGCACTCTCGTCGATCACGATCGGTTTCTGAACAATCCCTATCAAGGTCTAGGTCAAGGTCACGATCGAGATCAAGATCACGGTCACGATCACCAGTTTCATCTCGTCATCGTGCAAGCAGACCTCGAAGTCGGAGCAGATCTCGGTCCAAGTCTAGATCCCTTTCACCGAATGTGAGATCCGATCGAAGCCGAAGCCAATCTGTTGATTCCAGGGACCAATATTCAGAATAGGACATTGCTGTGAGGCTGCTCTCAGATGGAACAGTAAAAGCGTAGGAGAAAAGTAGGGAATGGTATATTTGGAGGGTTCACTTTTAATGTAAAATGTGTTATGGATGACCTTTATTAACCCAAGCCATGTTGCTGCATTGTATGTCGACACATGCTTCGGTTATTTCACTTTTAACGTTCTCTGTTCTTCCACCTTCGAGTATATTTCGTTACTATTACATATTCTCTGATGACTAGTTTTTGTTTCATGTATTTTTCTTTAAAGCAGTTATCAAGTCTTACATTATC

Coding sequence (CDS)

ATGAGCAGCAGAAACAGTCGTACCATCTATGTTGGGAATCTTCCTGGTGACATTCGTCTGAGAGAAGTAGAAGATCTGTTCTACAAGTATGGACCCATTGTTGATATTGATTTGAAGATTCCACCACGACCACCGGGCTATGCTTTTGTTGAGTTTGAAGATGTTCGTGATGCTGAAGATGCCATTTATGGCCGAGATGGGTATAAGTTTGATGGATGTCGATTGCGGGTGGAATTTGCACATGGTGGAAGGGGACATTCTTCTTCTGTGGATCGTTACAGTCGTAGTGGAAGTAGTCGTGGTGGTGTTCCTCGCCGAACTGACTATCGGGTTTTGGTTACTGGATTACCTTCTTCTGCTTCATGGCAAGACCTGAAGGATCACATGCGTCGTGCTGGTGATGTCTGCTTCTCTGAGGTTTTCCGTGATCGTGGTGGGATGGCAGGAATAGTTGATTATACAAACTATGATGACATGAAATATGCTATTAGAAAACTTGATGATTCTGAATTTCGGAATGCCTTTTCTCGAGCATATGTACGGGTGAAGGAATATGACTCTAGACACAGCTACTCCAGGAGTCCATCTCTTGATTCTAGACGAAGTGATTATTCTAGAAGTCCTAGTCGTAGTCCATACAGGGGAAGAGGCCGGAGTCAGAGCCGAAGCAGAAGTCGAAGCCGTAGCCGTAGCCGTAGTTATAGCGGCAGGAGCACTAGTCTATCTCCAAGGCACAAGCACTCTCGTCGATCACGATCGGTTTCTGAACAATCCCTATCAAGGTCTAGGTCAAGGTCACGATCGAGATCAAGATCACGGTCACGATCACCAGTTTCATCTCGTCATCGTGCAAGCAGACCTCGAAGTCGGAGCAGATCTCGGTCCAAGTCTAGATCCCTTTCACCGAATGTGAGATCCGATCGAAGCCGAAGCCAATCTGTTGATTCCAGGGACCAATATTCAGAATAG

Protein sequence

MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAEDAIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSLSPNVRSDRSRSQSVDSRDQYSE*

Homology

[Close]

BLAST of Cucsa.181840.4 vs. Swiss-Prot
Match: SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 4.0e-101
Identity = 201/284 (70.77%), Postives = 220/284 (77.46%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFED RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AIYGRDGY FDGCRLRVE AHGGR  S SVDRYS S S+     RR+DYRVLVTGLP SA
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSA 120

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180
           SWQDLKDHMR+AGDVCFSEVF DR GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY+
Sbjct: 121 SWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAYI 180

Query: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS 240
           RV+EY+SR S SRSP       D S+S              RSRSRSR  S SYS +S S
Sbjct: 181 RVREYESR-SVSRSP-------DDSKS-------------YRSRSRSRGPSCSYSSKSRS 240

Query: 241 LSPRHKHSRRSRSVSE-----QSLSRSRSRSRSRSRSRSRSPVS 280
           +SP    S RSR +S       S+SRS+SRS+SRSRSRS SPVS
Sbjct: 241 VSPARSISPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVS 263

HSP 2 Score: 197.6 bits (501), Expect = 2.1e-49
Identity = 141/314 (44.90%), Postives = 162/314 (51.59%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFED RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AIYGRDGY FDGCRLRVE AHGGR  S SVDRYS                         +
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYS-------------------------S 120

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180
           S+   +   RR+           R  + G+    ++ D+K  +RK  D      FS  + 
Sbjct: 121 SYSASRAPSRRSDY---------RVLVTGLPPSASWQDLKDHMRKAGDV----CFSEVFP 180

Query: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS 240
             K       YS    +         +  R+ +           S +  R R Y  RS S
Sbjct: 181 DRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAF-----------SSAYIRVREYESRSVS 240

Query: 241 LSPRHKHSRRSRSVSEQSLSRSRSRSRS-RSRSRSRSPVSSRHRASRPRSRSRSRSKSRS 300
            SP    S RSRS       RSR  S S  S+SRS SP  S    SRP SRSRS   S S
Sbjct: 241 RSPDDSKSYRSRS-------RSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVS 258

Query: 301 LSPNVRSDRSRSQS 314
            S +    RSRS+S
Sbjct: 301 RSQSRSKSRSRSRS 258

[Close]

BLAST of Cucsa.181840.4 vs. Swiss-Prot
Match: SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.9e-96
Identity = 197/314 (62.74%), Postives = 226/314 (71.97%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRT+YVGNLPGDIR REVEDLF KYGP+V IDLK+PPRPPGYAFVEF+D RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGG-----------VPRRTDY 120
           AI+GRDGY FDG RLRVE AHGGR  SS   R S +G  RGG             RR+++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDS 180
           RVLVTGLPSSASWQDLKDHMR+ GDVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRS 240
           EFRNAFS  YVRV+EYDSR   SRSP   SR   YS+S SRS    RGRS SRSRSRSRS
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSP---SRGRSYSKSRSRS----RGRSVSRSRSRSRS 240

Query: 241 RSRSYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRS 300
           RSRS   +S+  SP       SRS   +S SRS S  RSRSRSRS  P   +  +  P  
Sbjct: 241 RSRSPKAKSSRRSPA---KSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSK 300

Query: 301 RSRSRSKSRSLSPN 304
            S ++S   + SP+
Sbjct: 301 PSPAKSPIHTRSPS 302

[Close]

BLAST of Cucsa.181840.4 vs. Swiss-Prot
Match: SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 6.9e-93
Identity = 194/327 (59.33%), Postives = 224/327 (68.50%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MS R SR+IYVGNLPGDIR  E+ED+FYKYG IVDI+LK+PPRPP Y FVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSG-------------SSRGGVPRRT 120
           AI GRDGY  DGCRLRVE AHGGRG SSS  R    G             S+R GV R +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLD 180
           ++RV+V GLPSSASWQDLKDHMR+AGDVCF+EV RD  G  G+VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRS 240
           D+EFRN ++R ++RVK+Y+S  S SRSPS        SRS SRS  RGRGRS SRSRS S
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPS-----RSRSRSRSRSRSRGRGRSHSRSRSLS 240

Query: 241 RSRSRSYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRP 300
           RS+           SPR   S+  R    +SLSRS S+SRS S  + +SP        R 
Sbjct: 241 RSK-----------SPRKDLSKSPR----RSLSRSISKSRSPSPDKKKSP-------PRA 300

Query: 301 RSRSRSRSKSRSLSPNVRSDRSRSQSV 315
            SRS+SRS+SRS SP+    + R  SV
Sbjct: 301 MSRSKSRSRSRSRSPSKSPPKVREGSV 300

HSP 2 Score: 39.3 bits (90), Expect = 9.6e-02
Identity = 27/60 (45.00%), Postives = 32/60 (53.33%), Query Frame = 1


Query: 263 RSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSLSPNVRSDRSRSQSVDSRDQYSE 322
           R +    SRSRSRSP       SR RSRSRSRS+SR    +    RS S+S   R   S+
Sbjct: 194 RVKKYESSRSRSRSP-------SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSK 246

[Close]

BLAST of Cucsa.181840.4 vs. Swiss-Prot
Match: SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.7e-89
Identity = 190/294 (64.63%), Postives = 209/294 (71.09%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR REVEDLF KYGP+V IDLKIPPRPPGYAFVEFED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRG------------GVPRRTD 120
           AIYGRDGY FDG  LRVE AHGGR  SS   R S SG  RG            G  RR++
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSE 120

Query: 121 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDD 180
           YRV+V+GLPSSASWQDLKDHMR+ G+VCFS+VFRD  G  GIVDYT+Y+DMKYA   LDD
Sbjct: 121 YRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDD 180

Query: 181 SEFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSR 240
           +EFRNAFS  YVRV+EYDSR   SRSP   SR   YS+S      R RGRS SRSRSRSR
Sbjct: 181 TEFRNAFSHEYVRVREYDSRRD-SRSP---SRGRSYSKS------RSRGRSPSRSRSRSR 240

Query: 241 SRSRSYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRH 283
           SRS+       S SP+ K  RRS + S     RSRSRS+SRS S        RH
Sbjct: 241 SRSK-------SRSPKAKSLRRSPAKSTSRSPRSRSRSKSRSLSPRGWVTVERH 273

HSP 2 Score: 164.5 bits (415), Expect = 2.0e-39
Identity = 129/319 (40.44%), Postives = 155/319 (48.59%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR REVEDLF KYGP+V IDLKIPPRPPGYAFVEFED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AIYGRDGY F              GH   V+     G  R     R  Y     G     
Sbjct: 61  AIYGRDGYDF-------------DGHHLRVEL--AHGGRRSSHDARGSYSGRGRGGRGGG 120

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAF--SRA 180
                    R  G    SE    R  ++G+    ++ D+K  +RK  +  F   F   R 
Sbjct: 121 DGGG-----RERGPSRRSEY---RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRG 180

Query: 181 YVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRS 240
              + +Y S      +      R+ +S       Y       SR  SRS SR RSYS   
Sbjct: 181 TTGIVDYTSYEDMKYALDDTEFRNAFSHE-----YVRVREYDSRRDSRSPSRGRSYS--- 240

Query: 241 TSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSR 300
                                 +SRSR RS SRSRSRS   S+ R+ + +S  RS +KS 
Sbjct: 241 ----------------------KSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKST 265

Query: 301 SLSPNVRSDRSRSQSVDSR 318
           S SP  RS RS+S+S+  R
Sbjct: 301 SRSPRSRS-RSKSRSLSPR 265

[Close]

BLAST of Cucsa.181840.4 vs. Swiss-Prot
Match: SRS1B_DANRE (Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 4.1e-61
Identity = 140/259 (54.05%), Postives = 170/259 (65.64%), Query Frame = 1


Query: 2   SSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAEDA 61
           +  N   IYVGNLP DIR ++VED+FYKYG I DIDLK     P +AFVEFED RDAEDA
Sbjct: 10  AGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDA 69

Query: 62  IYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRG--GVP-RRTDYRVLVTGLPS 121
           +YGRDGY +DG RLRVEF   GRG           G+ RG  G P RR++YRV+V+GLP 
Sbjct: 70  VYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPP 129

Query: 122 SASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFR-NAFSR 181
           S SWQDLKDHMR AGDVC+++VFRD     G+V++   +DM YA+RKLD+++FR +    
Sbjct: 130 SGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 189

Query: 182 AYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGR 241
           AY+RVK                   D  RSPS    R R RS+SRSRSRS SRSRSYS R
Sbjct: 190 AYIRVK------------------VDGPRSPSYG--RSRSRSRSRSRSRSNSRSRSYSPR 245

Query: 242 STSLSPRH--KHSR-RSRS 254
            +  SPR+  +HSR RSR+
Sbjct: 250 RSRGSPRYSPRHSRSRSRT 245

HSP 2 Score: 45.1 bits (105), Expect = 1.7e-03
Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 1


Query: 224 RSRSRSRSRSYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSR-- 283
           R    ++ RS+ G +  +  +    R       +S SRSRSRSRS SRSRS SP  SR  
Sbjct: 172 RKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSNSRSRSYSPRRSRGS 231

Query: 284 HRASRPRSRSRSRS 296
            R S   SRSRSR+
Sbjct: 232 PRYSPRHSRSRSRT 245

HSP 3 Score: 38.9 bits (89), Expect = 1.2e-01
Identity = 34/90 (37.78%), Postives = 42/90 (46.67%), Query Frame = 1


Query: 224 RSRSRSRSRSYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHR 283
           R    ++ RS+ G +  +  +    R        S  RSRSRSRSRSRSRS S       
Sbjct: 172 RKLDNTKFRSHEGETAYIRVKVDGPR------SPSYGRSRSRSRSRSRSRSNS------- 231

Query: 284 ASRPRSRSRSRSKSRSLSPNVRSDRSRSQS 314
               RSRS S  +SR  SP      SRS+S
Sbjct: 232 ----RSRSYSPRRSRG-SPRYSPRHSRSRS 243

HSP 4 Score: 33.5 bits (75), Expect = 5.2e+00
Identity = 52/228 (22.81%), Postives = 79/228 (34.65%), Query Frame = 1


Query: 96  SGSSRGGVPRRTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMA-GIVDYT 155
           SG    G     D R+ V  LP     +D++D   + G +   ++   RGG     V++ 
Sbjct: 2   SGGVIRGPAGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFE 61

Query: 156 NYDDMKYAIRKLDDSEFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYR 215
           +  D + A+   D  ++     R                   + + R  Y     RS YR
Sbjct: 62  DPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYR 121

Query: 216 ----GRGRSQSRSRSRSRSRSRS--------YSGRSTSLSPRHKHSRRSRSVSEQSLSRS 275
               G   S S    +   R             G       R +    +    + +  RS
Sbjct: 122 VIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 181

Query: 276 RSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSLSPNVRSDRSR 311
                +  R +   P S  +  SR RSRSRSRS+S S S +    RSR
Sbjct: 182 HEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSNSRSRSYSPRRSR 229

[Close]

BLAST of Cucsa.181840.4 vs. TrEMBL
Match: A0A0A0M1I3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569330 PE=4 SV=1)

HSP 1 Score: 641.0 bits (1652), Expect = 8.0e-181
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180
           SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV
Sbjct: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180

Query: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS 240
           RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS
Sbjct: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS 240

Query: 241 LSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSL 300
           LSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSL
Sbjct: 241 LSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSL 300

Query: 301 SPNVRSDRSRSQSVDSRDQYSE 323
           SPNVRSDRSRSQSVDSRDQYSE
Sbjct: 301 SPNVRSDRSRSQSVDSRDQYSE 322

[Close]

BLAST of Cucsa.181840.4 vs. TrEMBL
Match: M5VZF1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009360mg PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 6.4e-122
Identity = 235/308 (76.30%), Postives = 256/308 (83.12%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR+RE+EDLF KYGPIVDIDLK+PPRPPGYAF+EFED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIRMREIEDLFMKYGPIVDIDLKVPPRPPGYAFIEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYS---RSGSSRGGVPRRTDYRVLVTGLP 120
           AIYGRDGY FDG RLRVE AHGGRGHSSS+DRYS    S SSRG   RR+DYRVLVTGLP
Sbjct: 61  AIYGRDGYNFDGYRLRVELAHGGRGHSSSMDRYSSYSHSSSSRGA-SRRSDYRVLVTGLP 120

Query: 121 SSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR 180
            SASWQDLKDHMRRAGDVCFS+VFRD+GGM GIVDYTNYDDM+YAIRKLDDSEF+NAFSR
Sbjct: 121 PSASWQDLKDHMRRAGDVCFSQVFRDQGGMTGIVDYTNYDDMRYAIRKLDDSEFKNAFSR 180

Query: 181 AYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGR 240
           AY+RVKEYDSR SYSRSPS D RRS YSRSPSRSPY         SRS+SRSRS SY GR
Sbjct: 181 AYIRVKEYDSRRSYSRSPSYDMRRS-YSRSPSRSPY--------TSRSQSRSRSYSYGGR 240

Query: 241 STSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKS 300
             S+SP  K+   S SV   S  RS SRSR+RSR+RSRSPVSS    +  RS+SRSRS S
Sbjct: 241 IRSISPEAKYLHCSPSV---SYPRSVSRSRARSRTRSRSPVSSASPRTLSRSKSRSRSLS 295

Query: 301 RSLSPNVR 306
           RSLSP+ R
Sbjct: 301 RSLSPSAR 295

[Close]

BLAST of Cucsa.181840.4 vs. TrEMBL
Match: V4T0Q8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002007mg PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 5.6e-118
Identity = 240/310 (77.42%), Postives = 254/310 (81.94%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRT+YVGNLPGD R+REVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFED RDAED
Sbjct: 1   MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSR--SGSSRGGVPRRTDYRVLVTGLPS 120
           AI GRDGY FDG RLRVE AHGGR HSSSVDRYS   SG SRG V RR+DYRVLVTGLPS
Sbjct: 61  AIRGRDGYNFDGYRLRVELAHGGRRHSSSVDRYSSYSSGGSRG-VSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFS+VFRDRGGM GIVDYT+YDDMKYAIRKLD SEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 180

Query: 181 YVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRS 240
           YVRV+EYDSR SYSRSP   SR   YSRS SRSPY         SRSRS SRS SYS RS
Sbjct: 181 YVRVREYDSRRSYSRSP---SRSPYYSRSRSRSPY--------YSRSRSPSRSWSYSPRS 240

Query: 241 TSLSPRHKHSRRS------RSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSR 300
            S SPR K+SRRS      RS S++S S S  RS SRSRSRS SP+SS  R+ R RSRSR
Sbjct: 241 RSYSPRGKYSRRSPSLSPARSASQRSPSGSPPRSFSRSRSRSSSPLSS-PRSPRGRSRSR 297

Query: 301 SRSKSRSLSP 303
           +RS SRSLSP
Sbjct: 301 TRSISRSLSP 297

[Close]

BLAST of Cucsa.181840.4 vs. TrEMBL
Match: A0A067JV96_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23302 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 5.8e-115
Identity = 237/335 (70.75%), Postives = 255/335 (76.12%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR SRT+YVGNLPGDIR REV+DLFYKYGPIVD+DLKIPPRPPGYAFVEFED RDAED
Sbjct: 1   MSSRASRTLYVGNLPGDIRQREVKDLFYKYGPIVDVDLKIPPRPPGYAFVEFEDARDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRG--GVPRRTDYRVLVTGLPS 120
           AI GRDGY FDGCRLRVE AHGGR HSS  DRYS   SS G  G  +R+DYRVLVTGLPS
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRRHSSPSDRYSSYSSSSGSRGPSKRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRA 180
           SASWQDLKDHMR+AGDVCFS+VFRDRGGM GIVDYTNYDDM  AIRKLDDSEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRKAGDVCFSQVFRDRGGMTGIVDYTNYDDMNRAIRKLDDSEFRNAFSRS 180

Query: 181 YVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRS 240
           YVRV+EYDSR S             YSRSPSRSPY        RSRS SRSRSRSYS RS
Sbjct: 181 YVRVREYDSRRS-------------YSRSPSRSPY-------GRSRSWSRSRSRSYSDRS 240

Query: 241 TSLSPRHKHSRRSRSVSEQSLSRSRSRS-----RSRSRSRSRSPVSS-------RHRASR 300
            S SP  K+S RSRS S      SRSR+      SRS SRSRSP++S       R  + R
Sbjct: 241 RSKSPGAKYSHRSRSASRSRSVSSRSRTGSSPRPSRSLSRSRSPLASSPSKRSGRDLSKR 300

Query: 301 PRSRSRSRS-KSRSLSPNVRSDRSRSQSVDSRDQY 321
            RSRSRSRS  S+S S +VRSD  RSQS+DSRD+Y
Sbjct: 301 GRSRSRSRSIGSQSRSSSVRSD--RSQSMDSRDRY 313

[Close]

BLAST of Cucsa.181840.4 vs. TrEMBL
Match: A0A059D2W0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01911 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.7e-114
Identity = 231/326 (70.86%), Postives = 254/326 (77.91%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MS R+S TIYVGNLPGD+R+REVEDLFYK+GPIVD+DLKIPPRPPGYAFVEFED RDAED
Sbjct: 49  MSRRSSCTIYVGNLPGDVRMREVEDLFYKFGPIVDVDLKIPPRPPGYAFVEFEDPRDAED 108

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AI GRDGYKFDG RLRVE AHGGRG+SSSVDRY  SGSSRGGV R +DYRVLVTGLPSSA
Sbjct: 109 AIRGRDGYKFDGYRLRVELAHGGRGYSSSVDRYG-SGSSRGGVGRHSDYRVLVTGLPSSA 168

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180
           SWQDLKDHMRRAGDVCFSEVFR+R G+ GIVDYT+YDDMKYAI+KLDD+ FRNAFSRAY+
Sbjct: 169 SWQDLKDHMRRAGDVCFSEVFRERDGVTGIVDYTSYDDMKYAIKKLDDTLFRNAFSRAYI 228

Query: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS 240
           RV+EYDSR SYSRSPS                     RS   SRSRS S SRSYS RS S
Sbjct: 229 RVREYDSRRSYSRSPS---------------------RSPRYSRSRSPSYSRSYSDRSRS 288

Query: 241 LSPRHKHSRRS------RSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSR 300
            SPR K+SRRS      RSVS +S S S + S SRSRSRSR+P+S   R  +  SRS  R
Sbjct: 289 RSPRKKYSRRSPSVSPARSVSSRSRSGSYAHSYSRSRSRSRTPLSPASR-GKHTSRSSRR 348

Query: 301 SKSRSLSPNVRSDRSRSQSVDSRDQY 321
           S S S SP+V   RSRS+SVDSR+ Y
Sbjct: 349 SLSESRSPSV---RSRSRSVDSREYY 348

[Close]

BLAST of Cucsa.181840.4 vs. TAIR10
Match: AT1G09140.1 (AT1G09140.1 SERINE-ARGININE PROTEIN 30)

HSP 1 Score: 369.4 bits (947), Expect = 2.3e-102
Identity = 201/284 (70.77%), Postives = 220/284 (77.46%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFED RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AIYGRDGY FDGCRLRVE AHGGR  S SVDRYS S S+     RR+DYRVLVTGLP SA
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSA 120

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180
           SWQDLKDHMR+AGDVCFSEVF DR GM+G+VDY+NYDDMKYAIRKLD +EFRNAFS AY+
Sbjct: 121 SWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAYI 180

Query: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS 240
           RV+EY+SR S SRSP       D S+S              RSRSRSR  S SYS +S S
Sbjct: 181 RVREYESR-SVSRSP-------DDSKS-------------YRSRSRSRGPSCSYSSKSRS 240

Query: 241 LSPRHKHSRRSRSVSE-----QSLSRSRSRSRSRSRSRSRSPVS 280
           +SP    S RSR +S       S+SRS+SRS+SRSRSRS SPVS
Sbjct: 241 VSPARSISPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVS 263

HSP 2 Score: 307.8 bits (787), Expect = 8.1e-84
Identity = 187/314 (59.55%), Postives = 207/314 (65.92%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR +RTIYVGNLPGDIR  EVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFED RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AIYGRDGY FDGCRLRVE AHGGR  S SVDRYS S S+     RR+DYRVLVTGLP SA
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSA 120

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180
           SWQDLKDHMR+AGDVCFSEVF DR GM+G+VDY+NYDDMK                    
Sbjct: 121 SWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMK-------------------Y 180

Query: 181 RVKEYDSRHSYSRSPSLDSRRSDY-SRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRST 240
            +++ D+    +   S   R  +Y SRS SRSP   +     RSRSRSR  S SYS +S 
Sbjct: 181 AIRKLDATEFRNAFSSAYIRVREYESRSVSRSPDDSKSY---RSRSRSRGPSCSYSSKSR 240

Query: 241 SLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRS 300
           S+SP       +RS+S           RSR  SRSRS  SS        SRS+SRSKSRS
Sbjct: 241 SVSP-------ARSISP----------RSRPLSRSRSLYSSV-------SRSQSRSKSRS 260

Query: 301 LSPNVRSDRSRSQS 314
                   RSRS S
Sbjct: 301 --------RSRSNS 260

[Close]

BLAST of Cucsa.181840.4 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 352.8 bits (904), Expect = 2.2e-97
Identity = 197/314 (62.74%), Postives = 226/314 (71.97%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRT+YVGNLPGDIR REVEDLF KYGP+V IDLK+PPRPPGYAFVEF+D RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGG-----------VPRRTDY 120
           AI+GRDGY FDG RLRVE AHGGR  SS   R S +G  RGG             RR+++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 121 RVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDS 180
           RVLVTGLPSSASWQDLKDHMR+ GDVCFS+V+RD  G  G+VDYT Y+DMKYA++KLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRS 240
           EFRNAFS  YVRV+EYDSR   SRSP   SR   YS+S SRS    RGRS SRSRSRSRS
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSP---SRGRSYSKSRSRS----RGRSVSRSRSRSRS 240

Query: 241 RSRSYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRS 300
           RSRS   +S+  SP       SRS   +S SRS S  RSRSRSRS  P   +  +  P  
Sbjct: 241 RSRSPKAKSSRRSPA---KSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSK 300

Query: 301 RSRSRSKSRSLSPN 304
            S ++S   + SP+
Sbjct: 301 PSPAKSPIHTRSPS 302

HSP 2 Score: 46.6 bits (109), Expect = 3.4e-05
Identity = 32/68 (47.06%), Postives = 36/68 (52.94%), Query Frame = 1


Query: 250 RSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSLSPNVRSDRS 309
           R R    +  SRS SR RS S+SRSRS         R  SRSRSRS+SRS SP  +S R 
Sbjct: 191 RVREYDSRKDSRSPSRGRSYSKSRSRS-------RGRSVSRSRSRSRSRSRSPKAKSSRR 250

Query: 310 RSQSVDSR 318
                 SR
Sbjct: 251 SPAKSTSR 251

[Close]

BLAST of Cucsa.181840.4 vs. TAIR10
Match: AT3G49430.1 (AT3G49430.1 SER/ARG-rich protein 34A)

HSP 1 Score: 342.0 bits (876), Expect = 3.9e-94
Identity = 194/327 (59.33%), Postives = 224/327 (68.50%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MS R SR+IYVGNLPGDIR  E+ED+FYKYG IVDI+LK+PPRPP Y FVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSG-------------SSRGGVPRRT 120
           AI GRDGY  DGCRLRVE AHGGRG SSS  R    G             S+R GV R +
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 121 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLD 180
           ++RV+V GLPSSASWQDLKDHMR+AGDVCF+EV RD  G  G+VDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 181 DSEFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRS 240
           D+EFRN ++R ++RVK+Y+S  S SRSPS        SRS SRS  RGRGRS SRSRS S
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPS-----RSRSRSRSRSRSRGRGRSHSRSRSLS 240

Query: 241 RSRSRSYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRP 300
           RS+           SPR   S+  R    +SLSRS S+SRS S  + +SP        R 
Sbjct: 241 RSK-----------SPRKDLSKSPR----RSLSRSISKSRSPSPDKKKSP-------PRA 300

Query: 301 RSRSRSRSKSRSLSPNVRSDRSRSQSV 315
            SRS+SRS+SRS SP+    + R  SV
Sbjct: 301 MSRSKSRSRSRSRSPSKSPPKVREGSV 300

HSP 2 Score: 39.3 bits (90), Expect = 5.4e-03
Identity = 27/60 (45.00%), Postives = 32/60 (53.33%), Query Frame = 1


Query: 263 RSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSLSPNVRSDRSRSQSVDSRDQYSE 322
           R +    SRSRSRSP       SR RSRSRSRS+SR    +    RS S+S   R   S+
Sbjct: 194 RVKKYESSRSRSRSP-------SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSK 246

[Close]

BLAST of Cucsa.181840.4 vs. TAIR10
Match: AT4G02430.2 (AT4G02430.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 330.1 bits (845), Expect = 1.5e-90
Identity = 190/294 (64.63%), Postives = 209/294 (71.09%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR REVEDLF KYGP+V IDLKIPPRPPGYAFVEFED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRG------------GVPRRTD 120
           AIYGRDGY FDG  LRVE AHGGR  SS   R S SG  RG            G  RR++
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSE 120

Query: 121 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDD 180
           YRV+V+GLPSSASWQDLKDHMR+ G+VCFS+VFRD  G  GIVDYT+Y+DMKYA   LDD
Sbjct: 121 YRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDD 180

Query: 181 SEFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSR 240
           +EFRNAFS  YVRV+EYDSR   SRSP   SR   YS+S      R RGRS SRSRSRSR
Sbjct: 181 TEFRNAFSHEYVRVREYDSRRD-SRSP---SRGRSYSKS------RSRGRSPSRSRSRSR 240

Query: 241 SRSRSYSGRSTSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRH 283
           SRS+       S SP+ K  RRS + S     RSRSRS+SRS S        RH
Sbjct: 241 SRSK-------SRSPKAKSLRRSPAKSTSRSPRSRSRSKSRSLSPRGWVTVERH 273

HSP 2 Score: 164.5 bits (415), Expect = 1.1e-40
Identity = 129/319 (40.44%), Postives = 155/319 (48.59%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR REVEDLF KYGP+V IDLKIPPRPPGYAFVEFED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AIYGRDGY F              GH   V+     G  R     R  Y     G     
Sbjct: 61  AIYGRDGYDF-------------DGHHLRVEL--AHGGRRSSHDARGSYSGRGRGGRGGG 120

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAF--SRA 180
                    R  G    SE    R  ++G+    ++ D+K  +RK  +  F   F   R 
Sbjct: 121 DGGG-----RERGPSRRSEY---RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRG 180

Query: 181 YVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRS 240
              + +Y S      +      R+ +S       Y       SR  SRS SR RSYS   
Sbjct: 181 TTGIVDYTSYEDMKYALDDTEFRNAFSHE-----YVRVREYDSRRDSRSPSRGRSYS--- 240

Query: 241 TSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSR 300
                                 +SRSR RS SRSRSRS   S+ R+ + +S  RS +KS 
Sbjct: 241 ----------------------KSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKST 265

Query: 301 SLSPNVRSDRSRSQSVDSR 318
           S SP  RS RS+S+S+  R
Sbjct: 301 SRSPRSRS-RSKSRSLSPR 265

[Close]

BLAST of Cucsa.181840.4 vs. TAIR10
Match: AT5G52040.2 (AT5G52040.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 102.1 bits (253), Expect = 6.8e-22
Identity = 107/334 (32.04%), Postives = 146/334 (43.71%), Query Frame = 1


Query: 7   RTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAEDAIYGRD 66
           + ++ GN   D R  ++E LF KYG +  +D+K      G+AFV  ED RDAEDAI   D
Sbjct: 2   KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 61

Query: 67  GYKF--DGCRLRVEFAHGGRGHSSSVDRYSRSGSSR----GGVPRRTDYRVLVTGLPSSA 126
            +++   G RLRVE+    RG +       RSG SR    G  P +T +  ++     + 
Sbjct: 62  RFEYGRTGRRLRVEWTKNDRGGA------GRSGGSRRSSSGLRPSKTLF--VINFDAQNT 121

Query: 127 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 186
             +DL+ H    G +    + R+       + Y   +D   A+   + S+  +       
Sbjct: 122 RTRDLERHFEPYGKIVNVRIRRN----FAFIQYEAQEDATRALDATNSSKLMDKVISVEY 181

Query: 187 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYR--------GRGRSQSRSRSRSRSRSR 246
            VK+ DSR +   SP     RS   R  S SPYR        GRG S    +    S   
Sbjct: 182 AVKDDDSRGN-GYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDY 241

Query: 247 SYSGRSTS------LSPRHKHS--RRSRSVS-EQSLSRSRSRSRSRSRSRSRSPVSSRHR 306
               RS S      LSP +K    RR R  S E    R+RS  + R  SRS  P   R R
Sbjct: 242 GRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKR-R 301

Query: 307 ASRPRSRSRSRSKSRSLSP-NVRSDRSRSQSVDS 317
            SR       R +SRS  P   R +RSRS+S  S
Sbjct: 302 ESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSS 316

[Close]

BLAST of Cucsa.181840.4 vs. NCBI nr
Match: gi|778662425|ref|XP_011659887.1| (PREDICTED: serine/arginine-rich splicing factor SR30 [Cucumis sativus])

HSP 1 Score: 641.0 bits (1652), Expect = 1.1e-180
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180
           SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV
Sbjct: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180

Query: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS 240
           RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS
Sbjct: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS 240

Query: 241 LSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSL 300
           LSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSL
Sbjct: 241 LSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSL 300

Query: 301 SPNVRSDRSRSQSVDSRDQYSE 323
           SPNVRSDRSRSQSVDSRDQYSE
Sbjct: 301 SPNVRSDRSRSQSVDSRDQYSE 322

[Close]

BLAST of Cucsa.181840.4 vs. NCBI nr
Match: gi|659099466|ref|XP_008450613.1| (PREDICTED: pre-mRNA-splicing factor SF2 [Cucumis melo])

HSP 1 Score: 615.9 bits (1587), Expect = 4.0e-173
Identity = 316/324 (97.53%), Postives = 317/324 (97.84%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED
Sbjct: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120
           AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA
Sbjct: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSA 120

Query: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180
           SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV
Sbjct: 121 SWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYV 180

Query: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRSTS 240
           RVKEYDSRHSYSRSPSLDSRRSDYSRSPS SPYRGRGRSQ  SRSRSRSRSRSYSGRSTS
Sbjct: 181 RVKEYDSRHSYSRSPSLDSRRSDYSRSPSGSPYRGRGRSQ--SRSRSRSRSRSYSGRSTS 240

Query: 241 LSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSL 300
           LSPRHKHSRRSRS+SEQSL  SRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSL
Sbjct: 241 LSPRHKHSRRSRSISEQSL--SRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSRSL 300

Query: 301 SPNVRSD--RSRSQSVDSRDQYSE 323
           SPNVRSD  RSRSQSVDSRDQYSE
Sbjct: 301 SPNVRSDRSRSRSQSVDSRDQYSE 320

[Close]

BLAST of Cucsa.181840.4 vs. NCBI nr
Match: gi|645222096|ref|XP_008246433.1| (PREDICTED: pre-mRNA-splicing factor SF2 isoform X1 [Prunus mume])

HSP 1 Score: 445.3 bits (1144), Expect = 9.2e-122
Identity = 233/307 (75.90%), Postives = 253/307 (82.41%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR+RE+EDLF KYGPIVDIDLK+PPRPPGYAF+EFED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIRMREIEDLFMKYGPIVDIDLKVPPRPPGYAFIEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSR--SGSSRGGVPRRTDYRVLVTGLPS 120
           AIYGRDGY FDG RLRVE AHGGRGHSSS+DRYS     SS  G  RR+DYRVLVTGLP 
Sbjct: 61  AIYGRDGYNFDGYRLRVELAHGGRGHSSSMDRYSSYSHSSSSHGASRRSDYRVLVTGLPP 120

Query: 121 SASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFS+VFRDRGGM GIVDYTNYDDM+YAIRKLDDSEF+NAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMRYAIRKLDDSEFKNAFSRA 180

Query: 181 YVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRS 240
           Y+RVKEYDSR SYSRSPS D RRS YSRSPSRSPY         SRS+SRSRS SY GR 
Sbjct: 181 YIRVKEYDSRRSYSRSPSYDMRRS-YSRSPSRSPY--------MSRSQSRSRSYSYGGRI 240

Query: 241 TSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKSR 300
            S+SP  K+  RS S    S  RS SRSR+RSR+RSRSPVSS    +  RS+SRSRS S 
Sbjct: 241 RSISPEAKYLHRSPSA---SYPRSVSRSRARSRTRSRSPVSSARPRTLSRSKSRSRSLSW 295

Query: 301 SLSPNVR 306
           SLSP+ R
Sbjct: 301 SLSPSAR 295

[Close]

BLAST of Cucsa.181840.4 vs. NCBI nr
Match: gi|595826943|ref|XP_007205653.1| (hypothetical protein PRUPE_ppa009360mg [Prunus persica])

HSP 1 Score: 445.3 bits (1144), Expect = 9.2e-122
Identity = 235/308 (76.30%), Postives = 256/308 (83.12%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRTIYVGNLPGDIR+RE+EDLF KYGPIVDIDLK+PPRPPGYAF+EFED RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIRMREIEDLFMKYGPIVDIDLKVPPRPPGYAFIEFEDARDADD 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYS---RSGSSRGGVPRRTDYRVLVTGLP 120
           AIYGRDGY FDG RLRVE AHGGRGHSSS+DRYS    S SSRG   RR+DYRVLVTGLP
Sbjct: 61  AIYGRDGYNFDGYRLRVELAHGGRGHSSSMDRYSSYSHSSSSRGA-SRRSDYRVLVTGLP 120

Query: 121 SSASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSR 180
            SASWQDLKDHMRRAGDVCFS+VFRD+GGM GIVDYTNYDDM+YAIRKLDDSEF+NAFSR
Sbjct: 121 PSASWQDLKDHMRRAGDVCFSQVFRDQGGMTGIVDYTNYDDMRYAIRKLDDSEFKNAFSR 180

Query: 181 AYVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGR 240
           AY+RVKEYDSR SYSRSPS D RRS YSRSPSRSPY         SRS+SRSRS SY GR
Sbjct: 181 AYIRVKEYDSRRSYSRSPSYDMRRS-YSRSPSRSPY--------TSRSQSRSRSYSYGGR 240

Query: 241 STSLSPRHKHSRRSRSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSRSRSKS 300
             S+SP  K+   S SV   S  RS SRSR+RSR+RSRSPVSS    +  RS+SRSRS S
Sbjct: 241 IRSISPEAKYLHCSPSV---SYPRSVSRSRARSRTRSRSPVSSASPRTLSRSKSRSRSLS 295

Query: 301 RSLSPNVR 306
           RSLSP+ R
Sbjct: 301 RSLSPSAR 295

[Close]

BLAST of Cucsa.181840.4 vs. NCBI nr
Match: gi|567881737|ref|XP_006433427.1| (hypothetical protein CICLE_v10002007mg [Citrus clementina])

HSP 1 Score: 432.2 bits (1110), Expect = 8.1e-118
Identity = 240/310 (77.42%), Postives = 254/310 (81.94%), Query Frame = 1


Query: 1   MSSRNSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAED 60
           MSSR+SRT+YVGNLPGD R+REVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFED RDAED
Sbjct: 1   MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAED 60

Query: 61  AIYGRDGYKFDGCRLRVEFAHGGRGHSSSVDRYSR--SGSSRGGVPRRTDYRVLVTGLPS 120
           AI GRDGY FDG RLRVE AHGGR HSSSVDRYS   SG SRG V RR+DYRVLVTGLPS
Sbjct: 61  AIRGRDGYNFDGYRLRVELAHGGRRHSSSVDRYSSYSSGGSRG-VSRRSDYRVLVTGLPS 120

Query: 121 SASWQDLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRA 180
           SASWQDLKDHMRRAGDVCFS+VFRDRGGM GIVDYT+YDDMKYAIRKLD SEFRNAFSR+
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 180

Query: 181 YVRVKEYDSRHSYSRSPSLDSRRSDYSRSPSRSPYRGRGRSQSRSRSRSRSRSRSYSGRS 240
           YVRV+EYDSR SYSRSP   SR   YSRS SRSPY         SRSRS SRS SYS RS
Sbjct: 181 YVRVREYDSRRSYSRSP---SRSPYYSRSRSRSPY--------YSRSRSPSRSWSYSPRS 240

Query: 241 TSLSPRHKHSRRS------RSVSEQSLSRSRSRSRSRSRSRSRSPVSSRHRASRPRSRSR 300
            S SPR K+SRRS      RS S++S S S  RS SRSRSRS SP+SS  R+ R RSRSR
Sbjct: 241 RSYSPRGKYSRRSPSLSPARSASQRSPSGSPPRSFSRSRSRSSSPLSS-PRSPRGRSRSR 297

Query: 301 SRSKSRSLSP 303
           +RS SRSLSP
Sbjct: 301 TRSISRSLSP 297

The following BLAST results are available for this feature:

BLAST of Cucsa.181840.4 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SR30_ARATH	4.0e-101	70.77	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 S...	[more]
SR34_ARATH	3.9e-96	62.74	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 S...	[more]
SR34A_ARATH	6.9e-93	59.33	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2...	[more]
SR34B_ARATH	2.7e-89	64.63	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2...	[more]
SRS1B_DANRE	4.1e-61	54.05	Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b PE=2 SV=1	[more]

BLAST of Cucsa.181840.4 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1I3_CUCSA	8.0e-181	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569330 PE=4 SV=1	[more]
M5VZF1_PRUPE	6.4e-122	76.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009360mg PE=4 SV=1	[more]
V4T0Q8_9ROSI	5.6e-118	77.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002007mg PE=4 SV=1	[more]
A0A067JV96_JATCU	5.8e-115	70.75	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23302 PE=4 SV=1	[more]
A0A059D2W0_EUCGR	1.7e-114	70.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01911 PE=4 SV=1	[more]

BLAST of Cucsa.181840.4 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09140.1	2.3e-102	70.77	SERINE-ARGININE PROTEIN 30	[more]
AT1G02840.1	2.2e-97	62.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G49430.1	3.9e-94	59.33	SER/ARG-rich protein 34A	[more]
AT4G02430.2	1.5e-90	64.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G52040.2	6.8e-22	32.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cucsa.181840.4 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662425\|ref\|XP_011659887.1\|	1.1e-180	100.00	PREDICTED: serine/arginine-rich splicing factor SR30 [Cucumis sativus]	[more]
gi\|659099466\|ref\|XP_008450613.1\|	4.0e-173	97.53	PREDICTED: pre-mRNA-splicing factor SF2 [Cucumis melo]	[more]
gi\|645222096\|ref\|XP_008246433.1\|	9.2e-122	75.90	PREDICTED: pre-mRNA-splicing factor SF2 isoform X1 [Prunus mume]	[more]
gi\|595826943\|ref\|XP_007205653.1\|	9.2e-122	76.30	hypothetical protein PRUPE_ppa009360mg [Prunus persica]	[more]
gi\|567881737\|ref\|XP_006433427.1\|	8.1e-118	77.42	hypothetical protein CICLE_v10002007mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006376	mRNA splice site selection
biological_process	GO:0048024	regulation of mRNA splicing, via spliceosome
cellular_component	GO:0035061	interchromatin granule
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003729	mRNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.181840	Cucsa.181840	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.181840.4	Cucsa.181840.4-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.181840.4.CDS.13	Cucsa.181840.4.CDS.13	CDS
Cucsa.181840.4.CDS.12	Cucsa.181840.4.CDS.12	CDS
Cucsa.181840.4.CDS.11	Cucsa.181840.4.CDS.11	CDS
Cucsa.181840.4.CDS.10	Cucsa.181840.4.CDS.10	CDS
Cucsa.181840.4.CDS.9	Cucsa.181840.4.CDS.9	CDS
Cucsa.181840.4.CDS.8	Cucsa.181840.4.CDS.8	CDS
Cucsa.181840.4.CDS.7	Cucsa.181840.4.CDS.7	CDS
Cucsa.181840.4.CDS.6	Cucsa.181840.4.CDS.6	CDS
Cucsa.181840.4.CDS.5	Cucsa.181840.4.CDS.5	CDS
Cucsa.181840.4.CDS.4	Cucsa.181840.4.CDS.4	CDS
Cucsa.181840.4.CDS.3	Cucsa.181840.4.CDS.3	CDS
Cucsa.181840.4.CDS.2	Cucsa.181840.4.CDS.2	CDS
Cucsa.181840.4.CDS.1	Cucsa.181840.4.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.181840.4.three_prime_UTR.1	Cucsa.181840.4.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.181840.4.five_prime_UTR.2	Cucsa.181840.4.five_prime_UTR.2	five_prime_UTR
Cucsa.181840.4.five_prime_UTR.1	Cucsa.181840.4.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..76 score: 6.1E-18coord: 111..173 score: 2.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 110..181 score: 3.7E-6coord: 8..78 score: 7.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 109..187 score: 9.644coord: 7..82 score: 17
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 2..86 score: 7.1E-25coord: 105..196 score: 3.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 5..176 score: 1.56
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 290..299 score: 8.8E-34coord: 4..88 score: 8.8E-34coord: 106..191 score: 8.8
None	No IPR available	PANTHER	PTHR24012:SF442	SERINE/ARGININE-RICH SPLICING FACTOR 4	coord: 290..299 score: 8.8E-34coord: 4..88 score: 8.8E-34coord: 106..191 score: 8.8