Cucsa.168290.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.168290.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description50S ribosomal L24
Locationscaffold01160 : 52348 .. 60622 (+)
Sequence length894
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCAGTCGTCGTGCCGTCAGTCTCTCCTAGCCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAATCGCCGGTTGCCGCTCACTGTCGTTCCTGGGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGGTTCGTCTTCATCTTTCTCTAAGCTATTGAATGGTTTTTGTTATTATTTTTtCTTTTTGTGATTGTGGATTCTGTGTTTTTATTGGGTTCGTGGATTCTTGGTTTAAAATGGGGAAGCTAAGAGTAAATTAGAATGAAATTGGAGGAGAAAAACAGAATCCATTGAAGAAGATCAATGAGCAGCAACAACCGAACAGAGGAAAAAGAGAAGAAGCATTTAGCACTTTAGAGGGTGACTGTGGTTTCCATTTCTTTGCATATAAAGATAAGCAAATGCTCATTTTCCCTGAGAAGTGAATAACTGTGTTTGATTTTGGATGGGTTTAATGAGAAGTGGGCAAACTTTTCGGTTCTATTGGTTGATTTGCTTTGGTAATTGTTTTTATTGAACTCATAATAAATGTTTTGTATCGAGCTAATATGATTTGGATCTCTTCGTCCTTGACGAATGAGATAATGGACATTTATATAATGGGATTTACAAAATTACTATGCAACGCTCATTAAGTCCGCATAAAATGTTTGTTTAAATGCTTCTGAAGATTTTGGGTCTGTTTACTAGAAAAGTAGAATTCTCGTTCATTTCATGACTTACGTCCTGGTTTAATTCCTAACGCAATGTTATGCTCTGATGACACGAAACGAAATAACCTTTGAATACTTGTGGATGGTCGAATTTCATGGCTATACGGAAATTTAAATTGCTATTCTATCATTTTGATTGGTTTCTCTTTTGGTACTTAATATGTATTCTCTCAGTTCCAAAACTCTTGATTGGAATTACTTTTTCACCAGTTCAACTTAAAGTTTATGCACGGATAGAATTGCAACATCTTTTCTGCTTTGCTGGTGATTTGACCAATGAAACGTTAGGTGGAAGTTCCTGCACATAGAAAAACATAAAAACACATGAGACCCAAACACCACCTTGACTTGGGATATCGGTCTCCCTGTATAATACTATTATATATCAACGAGGTTCTCAAGAGTTCGCGATCAATAAAGCAAACATCACAAGAACAGACAATAAATAAATAAAGAAGATAGCAAGGAAACAAAGAAACTGAATTTCTATTCAAGCCAGCCGCCTCTTTCCAAGTGATCTCTCACTCCCCAAAAACTCACCCTTCCTCCAAACTGAAGCCAAAACCCTACAAAACCCCCTTCAGCTAGTCCCTACATGTACAACATTCTTCAGCTGGACCCCTCCGCACTTTCTGCTCGTGTTATTCCTTTCATACACTTTCAAAGTAGTTGAAGAATTCCAATTCACTGATTGAATAATATAAGTCTCTGGGATCTGTTTGGAATTCTGTACTCTGTATATATCATTGTTGTTCTATGTTGTGGCAAAAGTGTATGAACTCATAAACTGAATGATGAACTGCAGTTTGCTGGAGTAGCTTGTGCAGATATTGGCAGCAGTAGGTTTGGTATTTGCATTTCATCTAAATGGGTTGGAAGGCTGCTCAAAAGCTTATCAGGCACTGGAAAATTCTTAGAGGAGATAATGTAAGGGGTAAATTTTGAAGATTAAATATCTTATTTTTTTCCTAATGCTGGTCTAGGCTTCCTTATGAAACTCATGGTTGTTTGCACTTTTAACAGGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTAATTAAGCGTGTTATTCGCACTCAAAATCGTGTTATTGTTGAGGGAAAAAATCTGGTAGGAAAATTGCTACCAAATTTAACAATTGAAGGTTTATAGTTGAGCTTTCTCAGGTTTAACTGTTATGCTTGGGCCCGTTCTGGTATATGTTTGATCATGTAGGCAGTTGAGTTGTGCCTATGGCTGTTTTGTTGGCTTTCATTTAACATAAAGCTCTTTTCCCCTCTGCTCATATCCTCTGTGTACGAGTGCTTGATACCATATGGATATTTTTTtATGATTCAACAGTTGTTTATGAGTCGTGTTTGAATGGTTTTCTCAGCTGATTTTGAGCCTGTCAGTTTTTTTAGCTGTCATCACCTTTCCATGCTTTATACAGGTTAAAAAaCACATAAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACAGTTGAAGCTCCCCTACATGTATCAAATGTCCAAGTTATTGATCCAGTAACAGGGTTTGGATCTATCCTCAATTGTTATTGGGTTTTGATGTTTTGCCTGGAACTAGAGCATTGACACACACTGTTCTTTCGCAGGAAGCCTTGTAAGGTTGGTTATAGATATCTTGAAGATGGTTCTAAGGTACGAGTTGCAAGAGGATTGGAAGCCTCTGGATCTGTAATTCCTCGCCCGGAGATCTTAAAGATAAGGAGTAGTCCAAGACCTACAGTTGGTACTGATCTAAAGCCCTCAATGTTCTTAATTAGTATTTATCTTCTTTGCTATTTTTTATAGATATATATATTTTCTTCTTGTTATTTGCTAAAATATTCTGCTCTAAAGTGCTTCTTTTGCATTCCTTTTAAGTTTCGTGCTTCTTTTGTAATTTCATGTTTTTtACTTGTTTTtGTCATTCCATGTGTATGCTCTTATTAAATTTTCTCCGTTGATGAGATTTCTAGTTTCGCTATGGGTTTCGTAGACACAGTTGTCCAACCGATTAGATTAAGTTGTATTATGTTGTCGTTTTTCATTGTCCTCTTTCTTTCTCAGCCTGATAGAATATAAATAGCTATACAACTACTGTAAATGGGTTGAAGTTAGTACAACAATGAAGAGTTCTTTGTATTATTTAATACAAAACTCTTGGTACTAGAGCTCTAAACAGGGAGCTAATACAACTTTTTCCTTATCTGCTTCGATCAATGTGCCTAGACCTACGATTTCTTTGCTCCAAGAGAAGCAACAAAATTTCCTAAGCCTACTCTTGGTATAATCCTATTTCTTTCTTATATCAGCCATTTTTTAAAATATTAAACTCAATGATAGAGAAACCCATCTGCATTGACAAAACCAACTATGGAATATTATCATTGTATTGGCCTTCACGAAAGGTATATTGGTGGAAGCAACCGTTGTACTCTCCATTACCTTGGTGAAAACAGACTTTTAACAAGTTGAAATACATGTCATGGTATAGACACAATCCAGTGGTAACAAGATGaTTGTATTACTTCTCTAATAGATAAAATGACATCTAGAATAGGTAATTATGGACATTGTAGCTTCATTTGGAATGCATTAGCCACCTTGGCCAACAATACCTTGTGAAAGTACATGGTAGGAGAAGGGGGAGGGCATCTGCTATTGAGGGGCTGTGAGTTTTGGTAAGAGCTATTGTGAGTGAGAGATTCTGTTATGAGATTTGGAGCCATTTAGTTATTCGTTAGAGAGGTTGTGAGGGAAAGTTGTAAATATGGTCAAGCACCTTACTGTGAAAAGAGTAGGGTGTCTTTGATCATTTTGAGTTATCTTTTATTAGGAAAGAATTTCATTTGGCTCTGTTTCTTTACCTGAGCATAAACAGGGGTTCTATCAGTTGCTGATAGTGTGGCTAGATCAGTCAACAATACCAGATGGACTTTTAATTGGGGGATAGTGGCAGAATATAATGCTTTTGTAGTTGCATTAGATACAAGAGGAGCGTCTCTTTCATTTGATGATAACATCTAAAGAATGTTGCTACGATTCGAGCAAAACTGAATTAAAAATGAAAAAGAAAATTGAGTGAGTGCATCTGCTATATATATATATATATATACATACATATATATATAGACATACATACATATATATACATACAAaTATATACATACATACATACATATATACATACATATATATACATACATACATACATACATACATATATACATACATATATAGACATATATACATACAAATATACATACATACATACATATATACATACATATATAGACATATATACATACATATATAGACATACAGACATATATAGTGTATGTaTATATGTCTGTATGTCTATGTATGTATGTATATATGTATGTATGTATATATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATGTATGTATATATATATGTATGTCTATATATGTCTGTGTGTCTATATATGTATGTATGTATGTTtATATATGTATGTATATATGTATGTATGTATGTATATATATGTGTGTATGTCTATATGTCTGTATGTCTATATATGTATGTATATATGTCTATATATGTATGTATATATGTATGTATGTATGTATATATATGTATGTATGTATATATATGTATGTATGTATGTATATGTATGTATGTATGTATGTATGTATATGTATATGTATGTATATATATATAAATATGTATGTAGATATATCTATATATGTATGTCTATGTATGTATGTCTATATATATAGACATACATACATACATACATATACATACATACATATACATAAATATACATACATACATACATATACATACATACATATACATACATATACATAAATATACATACATATACATATACATACATACATATATTTTGTTGCTGACTGTACCAATTAAGTATTTTTtTTTGAAAAGGAAACAAATCATTTTATTTATATAAATGTAAAATGAAAGAGACTAATGCTCCAAGTAAATACGGATTATACAAAGAGCATAAAGCATAACAAGGATCAACAAGCGCACTGAGACTTCTCAACTAAGTTGACACCCCCTTAGCGCCTTCATCGTATCCTTCAAAACATAACATCAAAAATCGGCCGAGGCTTATAAATTCAGCCATTACAAATAGGACAAAAAGACTATAAATCACTAGCCTTACAAAGGATTCATCAAAGAGCATACAAAAGGCCTAAGACAAATTAAAAGTGCAAAATGAGATATAACTCAAAACAAAAAAATTAAGCTGGGAAGATAAAGACTGTCCAATTGTAGATTTCTTGAATGCTGTAGCTTTCAAAAGGCTTGGAGAAGGAACAGCTAGAGGAGGCGTTCTTACGGGAAAATTCAAAGCGGTCCAACCAAATTAAGGATTTATCATGGAATACCCTTTGATTCTTGTCAAACCCTCATTCTGCCAAAAGTGACTTTACCACATGTATCCAAAAAGTGATCAAGGGATTTTTtCTTTTGAAATACTTTCCAACTAAAAGTTTCTGGATATTTCTTTGAAGGTTAGCACCAAACACCCAAGATAGGTTAAAGAAAGAAAACAACTTCTCCCAACATTGTACTGTGTACGAACACAAGAAGAAGAGATGTAAAGGATCTTCTCCATACCAATCAGATCATTCTCCTTCCTTTTTtGGTTCTCCTGAAATACAGGAAACCACTCTTTCACAGCAGCCTTCACCTTTCTCAATTTAGCGCTGAAAAAAAaCTGGCCCAACCAACAGAATGGCTATTCTTTCGGGCGCTTTCAATGACTTTGTTGCATTCTTTGTTGAGCATCCAACTGTTACAAAATATAAAAGAGGAAGGCCCCcTTTTTAAAAGATACACCTTCAAGAAAAAGAGGAAAATGATCAGAGAACAGTCTTGCTTGTCTGTTAACTCCTGTATTTTCAAAATTCTCATCCCGAGTAGTATTGATGAAAAAGCAGTCGATTAGCGATCTTGCTAAGAAAGAACCTTCCCTTGTCCAAGTGAAAATCTACCATTGCTAAGAGGAACCTCCAAAAGTTTAGCTCGATCAATATCATTATTAAACTTCCTCATACATTTAGTGGTTTTTCCACAAGGGAATTGTTCATGTGCCCATCTCGTAATGTTGAAGTCACTTCCTACACACCATGCCCCAATACAATAATTTGACAAGGAAAGGAGCTCGGGGCAAACAAATTTTCTTTtCTTGTAAACATTCGGGCTATAAACATTTTTAATCTAGCAAGTCTTTTGTTAGACCCCCTATCATTTACAAATATAAAAGGAAGGAATTAGGGAAGGGAAAGATGGGAATTACTCAGAAGACCAGGGGTGGAGAGATTTTTGGAGGGCCCACCCACCAGGTGTATATAAGGAATGTTTTTGGAATCCACCAAAGTAGGACATATTTTGGGTAAAAGCTTCTGAAGGCTTTTAAGGAGAAGATACTAGCCTTCTTGAAGGAGCTAGAGGATAGTCTTTATTATTGCTTTCAATCCTATCATCGTTGTGTGTGGTTCTTTAGTGTTATTCTGTAGGCTTTTGTGAACACTTGTGGATTTCGTTATCAATATAAATATAGCAGAGTATTGTCTCTGTTTCTCCATCTTTGTTAGAATTTTCTGCATTTTAGAGAAGGAGCCCTAATAGATTGTTATCAGAGCTGCAACAATCCTGGGTACCATGACGAAAAAGTAAACGGAGGAGAGGTTAGAAACGACATAAAGGGAGATTAGAGACATGAAGAAAATCTTATTGGGTCTAAATAAAGGCGTCGAAAGACTAGCCGAAGAGGTAGAAGAGAACATTGCTAGTCGAAGAAAGGAAAAGTCTGGAACGTCCGATGGCCTCGTTCTAAAGATGGGGAAACTAGAGGAAATAGATGTGACAATGACCTTGGGACAAGGGATGACGGACAAGAGTAACTACAAGAAACTGAAGATACTTGTTTTTGCAGGGGAGAACCAGGAGTCATGGGTTTATTGAGTTGGACATTTTTTTtAGATTAATGATTTAGCCGAAATTGAGAAGGTGAAGGTTGCCGTCGTGAGTTTTGCACAATAGGAGTTGAATTGATTTTGTTGGAGCAATAACTAGACGAAAGTGACCTCGTGGGAGGACCTTAAGAATCAGATGTTTGAGCACTTCCAACCCACTAGAGAAGGGAGTTTAGGAGCTTGTTTGATTTGAATCAAGTAGGAGGGGGCATATGCAGATTATCGGAAGAAATTTTTGAATTACTTTGCCTTGTTGTCGGATATGGCAAAGAGTGTTTTGATGGAAGCGTTAGTGATTAGTTTCGAATTGGAATTACATGCGAAGGTATGAGCCACCACCCAAAAATTTTGGAGTATGAAGGAGGCTCCATTAGTTAATGACTGCAATATAGCCCTGAAGTTAGCCCCAAGTGAATGGGGATCCCATGGACGGAAAAAaGGAAGCCCACATCCTCAAATACCGAGCAGGCTAGACAGCAAGGAGGTGGAACTCAAACCCGTCACATTACTATACCCATTAAAGGTAACTATGTTAAAAGGGAACCACCAGTGAAGCGACTCTCTGATATGGAATTTAGGACACGACTGGATAAAGGCCTCTGTTTTCGTTGCAACGTACAATATTCCCACGGCCACTGGTGTAAGGTAAGGGAGAATCGGGAATTGATGTTATTCATCATGAATGAAGAAGAAAACAAGATTTTGGCATATTTGGGAGAGGAAATTGCAGTTCTCTGTCAAGTATTTCACATTTAGCACGGTTATTCTCTATATTCAAAGCCGACTCAATTCTATGATGGCCAATGTTCCTTTGAAGAAACATACTTCATGCATAATTCTACCTTTTATGTATCTCGATCACTCCAATATAGACACTTTGGTTAGAAGGAATCCATAGACTCTAGGTCTGGTTGCATTATACAATTTATCTAATCTAATTTATTTAAATGGAATTCCTAATAAAAaaGGTTTTTATCAATTTTATAGTTCAAGCATAAATGTGAACTAGCTTGGGCACTGTTGCATGACATATTTGATATAGTTCTCTAAATTTACCTATCAAGTTCTTGCTCAATCTAACCATTTAGTTGCCAACACTAGTAAATGGAATAATCAAGAATTTCAAGTAACCTGCCGAAGGGCTTCTTTTTACCAACCAGAAAAAGGAACCCTTAGAATGAACTCACTATTTCTGCACCTTTTGATTTGATCATATTTGTTGATTTATTGCAGCTGGCCCCAAGGATACTCCAATGGATGTGGTGCTGGAGAAAACTTATGATCCTAAAACAGGGAAGGGCATGCCTGAACTTTAAAGGTTACTTTCTCTTTAATTCGGAAGACATGGTTGTACTAGGTTGGAAAATAATTCAGTATCTGAGGATAATATCTTTGTTGTATGGGCGGGTAACTTGAATTTCATTCTTCTTTGTGATTCTACAATTATTCTAGATTAATATTTTGTAAGGTATCCCTTGCTACTTTTAGTATTGATATGAAAGAGTTGGCCTGAAGCTACAATATCCTTTT

mRNA sequence

TCTCTCAGTCGTCGTGCCGTCAGTCTCTCCTAGCCACCGTTCGCGCCGCCGCCGTTCCCTCTCTCACTCTCAATCGCCGGTTGCCGCTCACTGTCGTTCCTGGGTTTCTCTGGATCTCAATTAACCCACTTGTCTTAGTTTGCTGGAGTAGCTTGTGCAGATATTGGCAGCAGTAGGTTTGGTATTTGCATTTCATCTAAATGGGTTGGAAGGCTGCTCAAAAGCTTATCAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTAATTAAGCGTGTTATTCGCACTCAAAATCGTGTTATTGTTGAGGGAAAAAATCTGGTTAAAAAACACATAAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACAGTTGAAGCTCCCCTACATGTATCAAATGTCCAAGTTATTGATCCAGTAACAGGGAAGCCTTGTAAGGTTGGTTATAGATATCTTGAAGATGGTTCTAAGGTACGAGTTGCAAGAGGATTGGAAGCCTCTGGATCTGTAATTCCTCGCCCGGAGATCTTAAAGATAAGGAGTAGTCCAAGACCTACAGTTGCTGGCCCCAAGGATACTCCAATGGATGTGGTGCTGGAGAAAACTTATGATCCTAAAACAGGGAAGGGCATGCCTGAACTTTAAAGGTTACTTTCTCTTTAATTCGGAAGACATGGTTGTACTAGGTTGGAAAATAATTCAGTATCTGAGGATAATATCTTTGTTGTATGGGCGGGTAACTTGAATTTCATTCTTCTTTGTGATTCTACAATTATTCTAGATTAATATTTTgtaaggtatcccttgctacttttagtattgatatgaaagagttggcctgaagctacaatatccttTT

Coding sequence (CDS)

ATGGGTTGGAAGGCTGCTCAAAAGCTTATCAGGCACTGGAAAATTCTTAGAGGAGATAATGTGATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTGTAATTAAGCGTGTTATTCGCACTCAAAATCGTGTTATTGTTGAGGGAAAAAATCTGGTTAAAAAaCACATAAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACAGTTGAAGCTCCCCTACATGTATCAAATGTCCAAGTTATTGATCCAGTAACAGGGAAGCCTTGTAAGGTTGGTTATAGATATCTTGAAGATGGTTCTAAGGTACGAGTTGCAAGAGGATTGGAAGCCTCTGGATCTGTAATTCCTCGCCCGGAGATCTTAAAGATAAGGAGTAGTCCAAGACCTACAGTTGCTGGCCCCAAGGATACTCCAATGGATGTGGTGCTGGAGAAAACTTATGATCCTAAAACAGGGAAGGGCATGCCTGAACTTTAA

Protein sequence

MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPEILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL*
Homology
[Close]
BLAST of Cucsa.168290.1 vs. Swiss-Prot
Match: RL24_RICFE (50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=rplX PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-23
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 1 

Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNLVKKHTKPNQMSEGGIITKELP 64

Query: 74  LHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVI 117
           +H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG +I
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]
BLAST of Cucsa.168290.1 vs. Swiss-Prot
Match: RL24_RICPR (50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) GN=rplX PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-23
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1 

Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V+II GK KG+ G + +V   +N V+V G NLVKKH K  +  EGGI T E+P
Sbjct: 5   KVKKGDEVVIITGKYKGKKGKVLKVFPEENTVVVSGVNLVKKHTKPNKMSEGGIITQESP 64

Query: 74  LHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVI 117
           +H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG +I
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]
BLAST of Cucsa.168290.1 vs. Swiss-Prot
Match: RL24_RICPU (50S ribosomal protein L24 OS=Rickettsia peacockii (strain Rustic) GN=rplX PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.9e-23
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 1 

Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVI 117
           +H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG +I
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]
BLAST of Cucsa.168290.1 vs. Swiss-Prot
Match: RL24_RICCN (50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=rplX PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.9e-23
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 1 

Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVI 117
           +H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG +I
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]
BLAST of Cucsa.168290.1 vs. Swiss-Prot
Match: RL24_RICM5 (50S ribosomal protein L24 OS=Rickettsia massiliae (strain Mtu5) GN=rplX PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.9e-23
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 1 

Query: 14  KILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G I +V    ++VIV G NLVKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVFGVNLVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVI 117
           +H+SN+  IDP TG P KV +++LEDGSKVRVA+    SG +I
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAK---KSGEII 104

[Close]
BLAST of Cucsa.168290.1 vs. TrEMBL
Match: A0A0A0LIP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G223690 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
Sbjct: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 159

[Close]
BLAST of Cucsa.168290.1 vs. TrEMBL
Match: B5AJV4_CUCMN (Ribosomal protein L24 OS=Cucumis melo var. cantalupensis PE=2 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.5e-84
Identity = 155/159 (97.48%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRV+RGLEASGS+IPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVSRGLEASGSIIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIR+SPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
Sbjct: 121 ILKIRTSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 159

[Close]
BLAST of Cucsa.168290.1 vs. TrEMBL
Match: A0A068V4X6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042440001 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.3e-79
Identity = 143/159 (89.94%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLI HWKILRGDNVMIIRGKDKGETG++KRVIR+QNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIHHWKILRGDNVMIIRGKDKGETGLVKRVIRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
           QGHEGGIFTVEAPLHVSNVQV+DPVTGKPCKVG RYLEDGSKVRV+RG+ ASGS+IPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIR++PRPTVAGPKDTPMDVVLE+TYDPKTG GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLERTYDPKTGLGMPDL 159

[Close]
BLAST of Cucsa.168290.1 vs. TrEMBL
Match: A0A061DRL4_THECC (KOW domain-containing protein OS=Theobroma cacao GN=TCM_004312 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.8e-78
Identity = 141/159 (88.68%), Postives = 154/159 (96.86%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWK+LRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
            GHEGGIFTVEAPLH SNVQV+DPVTGKPCKVG RYLEDG+KVRV+RG+ ASGS+IPRPE
Sbjct: 61  PGHEGGIFTVEAPLHASNVQVVDPVTGKPCKVGVRYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIR++PRPTVAGPKDTPMD+VLEKTYD KTGKGMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDLVLEKTYDSKTGKGMPDL 159

[Close]
BLAST of Cucsa.168290.1 vs. TrEMBL
Match: A0A0B0PKJ5_GOSAR (50S ribosomal L24 OS=Gossypium arboreum GN=F383_07711 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.8e-78
Identity = 140/159 (88.05%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVM+IRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMVIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
           QGHEGGIFTVEAPLH SNVQV+DPVTGKPCKVG +YLEDG+KVRV+RG+ ASGS+IPRPE
Sbjct: 61  QGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIR++PRPTVAGPKDTPMD+VL+KTYDPKTG GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDLVLQKTYDPKTGVGMPDL 159

[Close]
BLAST of Cucsa.168290.1 vs. TAIR10
Match: AT5G23535.1 (AT5G23535.1 KOW domain-containing protein)

HSP 1 Score: 281.2 bits (718), Expect = 4.0e-76
Identity = 133/159 (83.65%), Postives = 146/159 (91.82%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG IKRVIR+QNRVIVEGKNL+KKHIK G
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
             HEGGIFTVEAPLH SNVQV+DPVTG+PCKVG +YLEDG+KVRVARG   SGS+IPRPE
Sbjct: 61  PDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIR++PRPT AGPKDTPM+ V E+TYD KTGKGMP+L
Sbjct: 121 ILKIRATPRPTTAGPKDTPMEFVWEQTYDAKTGKGMPDL 159

[Close]
BLAST of Cucsa.168290.1 vs. TAIR10
Match: AT5G54600.1 (AT5G54600.1 Translation protein SH3-like family protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-12
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 1 

Query: 18  GDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHV 77
           GD V +I G+DKG+ G + ++    + ++++  NL  KH+K + +G  G I  +EAP+H 
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHS 135

Query: 78  SNVQVIDPVTGKPCKVGYRYLEDGSKVR 105
           SNV +         +VG++ LEDG KVR
Sbjct: 136 SNVMLYSKEKDVVSRVGHKVLEDGQKVR 163

[Close]
BLAST of Cucsa.168290.1 vs. NCBI nr
Match: gi|778668972|ref|XP_011649176.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
Sbjct: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 159

[Close]
BLAST of Cucsa.168290.1 vs. NCBI nr
Match: gi|659096878|ref|XP_008449336.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 2.2e-84
Identity = 155/159 (97.48%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRV+RGLEASGS+IPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVSRGLEASGSIIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIR+SPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL
Sbjct: 121 ILKIRTSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 159

[Close]
BLAST of Cucsa.168290.1 vs. NCBI nr
Match: gi|661881365|emb|CDP14938.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 302.4 bits (773), Expect = 4.8e-79
Identity = 143/159 (89.94%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLI HWKILRGDNVMIIRGKDKGETG++KRVIR+QNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIHHWKILRGDNVMIIRGKDKGETGLVKRVIRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
           QGHEGGIFTVEAPLHVSNVQV+DPVTGKPCKVG RYLEDGSKVRV+RG+ ASGS+IPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIR++PRPTVAGPKDTPMDVVLE+TYDPKTG GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLERTYDPKTGLGMPDL 159

[Close]
BLAST of Cucsa.168290.1 vs. NCBI nr
Match: gi|590717151|ref|XP_007050544.1| (KOW domain-containing protein [Theobroma cacao])

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-78
Identity = 141/159 (88.68%), Postives = 154/159 (96.86%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWK+LRGDNVMIIRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
            GHEGGIFTVEAPLH SNVQV+DPVTGKPCKVG RYLEDG+KVRV+RG+ ASGS+IPRPE
Sbjct: 61  PGHEGGIFTVEAPLHASNVQVVDPVTGKPCKVGVRYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIR++PRPTVAGPKDTPMD+VLEKTYD KTGKGMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDLVLEKTYDSKTGKGMPDL 159

[Close]
BLAST of Cucsa.168290.1 vs. NCBI nr
Match: gi|728845506|gb|KHG24949.1| (50S ribosomal L24 [Gossypium arboreum])

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-78
Identity = 140/159 (88.05%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGVIKRVIRTQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIRHWKILRGDNVM+IRGKDKGETG+IKRVIR+QNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMVIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVIDPVTGKPCKVGYRYLEDGSKVRVARGLEASGSVIPRPE 120
           QGHEGGIFTVEAPLH SNVQV+DPVTGKPCKVG +YLEDG+KVRV+RG+ ASGS+IPRPE
Sbjct: 61  QGHEGGIFTVEAPLHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRSSPRPTVAGPKDTPMDVVLEKTYDPKTGKGMPEL 160
           ILKIR++PRPTVAGPKDTPMD+VL+KTYDPKTG GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDLVLQKTYDPKTGVGMPDL 159

The following BLAST results are available for this feature:
BLAST of Cucsa.168290.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL24_RICFE2.9e-2353.4050S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) ... [more]
RL24_RICPR3.7e-2352.4350S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) GN=rplX PE=... [more]
RL24_RICPU4.9e-2352.4350S ribosomal protein L24 OS=Rickettsia peacockii (strain Rustic) GN=rplX PE=3 S... [more]
RL24_RICCN4.9e-2352.4350S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) ... [more]
RL24_RICM54.9e-2353.4050S ribosomal protein L24 OS=Rickettsia massiliae (strain Mtu5) GN=rplX PE=3 SV=... [more]
BLAST of Cucsa.168290.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIP5_CUCSA1.1e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G223690 PE=3 SV=1[more]
B5AJV4_CUCMN1.5e-8497.48Ribosomal protein L24 OS=Cucumis melo var. cantalupensis PE=2 SV=1[more]
A0A068V4X6_COFCA3.3e-7989.94Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042440001 PE=3 SV=1[more]
A0A061DRL4_THECC2.8e-7888.68KOW domain-containing protein OS=Theobroma cacao GN=TCM_004312 PE=3 SV=1[more]
A0A0B0PKJ5_GOSAR2.8e-7888.0550S ribosomal L24 OS=Gossypium arboreum GN=F383_07711 PE=3 SV=1[more]
BLAST of Cucsa.168290.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23535.14.0e-7683.65 KOW domain-containing protein[more]
AT5G54600.12.4e-1237.50 Translation protein SH3-like family protein[more]
BLAST of Cucsa.168290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668972|ref|XP_011649176.1|1.5e-85100.00PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis sativus][more]
gi|659096878|ref|XP_008449336.1|2.2e-8497.48PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo][more]
gi|661881365|emb|CDP14938.1|4.8e-7989.94unnamed protein product [Coffea canephora][more]
gi|590717151|ref|XP_007050544.1|4.1e-7888.68KOW domain-containing protein [Theobroma cacao][more]
gi|728845506|gb|KHG24949.1|4.1e-7888.0550S ribosomal L24 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003256Ribosomal_L24
IPR005824KOW
IPR005825Ribosomal_L24/26_CS
IPR008991Translation_prot_SH3-like_sf
IPR014722Rib_L2_dom2
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.168290Cucsa.168290gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.168290.1Cucsa.168290.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.168290.1.five_prime_UTR.1Cucsa.168290.1.five_prime_UTR.1five_prime_UTR
Cucsa.168290.1.five_prime_UTR.2Cucsa.168290.1.five_prime_UTR.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.168290.1.CDS.1Cucsa.168290.1.CDS.1CDS
Cucsa.168290.1.CDS.2Cucsa.168290.1.CDS.2CDS
Cucsa.168290.1.CDS.3Cucsa.168290.1.CDS.3CDS
Cucsa.168290.1.CDS.4Cucsa.168290.1.CDS.4CDS
Cucsa.168290.1.CDS.5Cucsa.168290.1.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.168290.1.three_prime_UTR.1Cucsa.168290.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003256Ribosomal protein L24HAMAPMF_01326_BRibosomal_L24_Bcoord: 13..107
score: 1
IPR003256Ribosomal protein L24PFAMPF17136ribosomal_L24coord: 51..107
score: 2.7
IPR003256Ribosomal protein L24TIGRFAMsTIGR01079TIGR01079coord: 14..107
score: 1.2
IPR005824KOWPFAMPF00467KOWcoord: 17..48
score: 7.
IPR005824KOWSMARTSM00739kow_9coord: 14..41
score: 3.
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 18..35
scor
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 10..107
score: 2.52
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 7..101
score: 4.6
NoneNo IPR availablePANTHERPTHR12903MITOCHONDRIAL RIBOSOMAL PROTEIN L24coord: 1..159
score: 8.1