Cucsa.153210.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.153210.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Phytoene synthase
Location	scaffold01124 : 412600 .. 414885 (+)
Sequence length	853

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTTCAGGCTTCATTTCTTGAAGAAGCTTATGAGAGTTGCAGGAAAATCTGTGCAGAATATGCTAAGACTTTCTATTTGGGAACTTTGCTGATGACAAAGGAACGACAGAGAGCAATATGGGCAATATATGGTAAGGCCAAAAAGAAAGGGAAAAAaTAAACAAAATCAGAGATAATTGTAGAGTATGCCCAAACTCAAACTCAAACTCTAAAATAGTTTTTTtCCCGCTTTTCACAACTTATTTTtGAACTCTTGTCTACATCATCAGCCTCTAAAGTTGCATTTAATTTTCATTTTTtGGAGAGAGTGAAAAGTGAGACAATGAGAGAGCGAGAGGAGACCAAGAATTAGTGAGAGAGACAATGAGAGCAAGACAGGGAGAGGGTGGAACCCAAGAATGAGTGGGAGTAAGTGAGAGCGAGACAGCAAGGGAGAGACAAGAGACTAAGAGAGAGGAAACCGAAAGTGAGAGCCACAAAGAGGAAAGCTACCTCGCAAAGAATGATAGCGAGAAAAGCTAATTCACGTAAGTGAGTTAATTTTGCACAAATATGATGTAAGAAAAGGGTTAAAAAGACGTCTACAAGTAGCGTAAGTTTCATTTTTTCCCCCTCCAATTTTAGGCCATTCATCCGTCGGAAACCAAAAACAATCACTCAGATAACATTTTTTAAGAGAACCCATAAAAGTAAGGAGTTTTGGTCATTTCCTAACCTAAATCCATGGAGAAGTTCTGACTTTTTGGTATTTTATTTTACTGTAGTTTGGTGTAGGAGAACAGATGAACTTGTGGATGGCCCCAATGCAATGTATATGAATCCAAAAGTTCTTGATCGATGGGAAGAACGATTGGAAGACATTTTTGAAGGCTGCCCCTATGACTTATTGGATGCTGCTTTAAGTCACACAGTCTCCAAATTTCCCATAGACATGAAGGTGCTGTGAGTTAAGGAGAAAAGTTATCGTTTTTTtGGTTCTTACTGATTTGAGCTCATACTTATTGTTGTTTTGTTTTTtGGTTTTCTGAAATCAGCCATTCAGGGACATGATTGAAGGCATGAGAATGGACACTAAAAAGTGTAGATATGAGAATTTTGAAGAGCTATATTTGTATTGTTATTATGTGGCTGGAACTGTGGGACTAATGAGTGTCCCTGTTATGGGAATTGCACCTGATTCTTCGCTTTCTACTCATACTGTTTACAGTGCTGCTCTCCATTTGGGAATTGGGAATCAACTTACTAATATTCTAAGAGATGTGGGAGAGGAGTAAGCTCTCTCTTTTGCTCTCTTTTGTTTATATCTGAACGTTTTGAATTCACTATCTACTCGTATCTATCTTATTTACTATGATTGTCATAGGATTTAAATGAGTGTGTTTTAATGAACTCTATAGCACTAGAGGTGCCTAATCTGATTTTGTTTTTGTCCTCCCTTCTTTTTCTTTAGTGGTAAAATATGTTTATTAGGAGGAACGTCGTTGATTTGATTATCAAATGCTCAACAAACTTTGACGAGATTGCTACTTTAGCAAGGCAATTGAGAAATGTTTTATCCTTATTATGTCCTCATGTTTGTAATCGTGCAACTCACCATGTAGCTTGTTATGCTTCTAAATTTTATGCCATTTAGGTCTCTTTCGTTCTTTCAATTTGGAAATTCTTGGAGGGTGTTGGGACACATGTTATTTTGAGTTTTAGATATTACTAATGGTGACTTTACTCTTCTTCCACCTCATTGAGGTTTGGTCTGATGAAGTTTTTTtAACGAACCATGTAAATCCATTGTCGGTATTTATTTTATTTACAACGTATCCTAATGCTGCCTTTTGAAGTCATTTCAGTGCAATGAGAGGGAGGGTATATCTTCCACAAGACGAGCTTACACAATTTGGATTATGCGACGAGGATATATTGAGAATGAGAGTGAGTGATGAGTGGAGAGAATTCATGAAAGAACAGATAAAAAGGGCGAGGTTCTATTTCAAACTAGCAGAAGAGGgAGCTTCTCAGCTTGACAAGGCCAGCCGTTGGCCAGTTTGGTCATCACTGATGTTGTACAGAGAAATATTGGAAGCAATTGAAGAAAATGATTACAACAATTTCACAAAGCGAGCATACGTAGGGAGGTCCAAGAAATTTCTTGCACTGCCTCTTGCTTACACCAAATCTATTTCACCACCCACTCTAGTCTTCAATTGACGCTGATGAAATGAAAGACAAATCCAAAGATATTGTGAAACACATCTTCAAATGGTTTGTTATGAGGAAATATATTGCT

mRNA sequence

ATGAAATTTCAGGCTTCATTTCTTGAAGAAGCTTATGAGAGTTGCAGGAAAATCTGTGCAGAATATGCTAAGACTTTCTATTTGGGAACTTTGCTGATGACAAAGGAACGACAGAGAGCAATATGGGCAATATATGTTTGGTGTAGGAGAACAGATGAACTTGTGGATGGCCCCAATGCAATGTATATGAATCCAAAAGTTCTTGATCGATGGGAAGAACGATTGGAAGACATTTTTGAAGGCTGCCCCTATGACTTATTGGATGCTGCTTTAAGTCACACAGTCTCCAAATTTCCCATAGACATGAAGCCATTCAGGGACATGATTGAAGGCATGAGAATGGACACTAAAAATGCTGCTCTCCATTTGGGAATTGGGAATCAACTTACTAATATTCTAAGAGATGTGGGAGAGGATGCAATGAGAGGGAGGGTATATCTTCCACAAGACGAGCTTACACAATTTGGATTATGCGACGAGGATATATTGAGAATGAGAGTGAGTGATGAGTGGAGAGAATTCATGAAAGAACAGATAAAAAGGGCGAGGTTCTATTTCAAACTAGCAGAAGAGGGAGCTTCTCAGCTTGACAAGGCCAGCCGTTGGCCAGTTTGGTCATCACTGATGTTGTACAGAGAAATATTGGAAGCAATTGAAGAAAATGATTACAACAATTTCACAAAGCGAGCATACGTAGGGAGGTCCAAGAAATTTCTTGCACTGCCTCTTGCTTACACCAAATCTATTTCACCACCCACTCTAGTCTTCAATTGACGCTGATGAAATGAAAGACAAATCCAAAGATATTGTGAAACACATCTTCAAATGGTTTGTTATGAGGAAATATATTGCT

Coding sequence (CDS)

ATGAAATTTCAGGCTTCATTTCTTGAAGAAGCTTATGAGAGTTGCAGGAAAATCTGTGCAGAATATGCTAAGACTTTCTATTTGGGAACTTTGCTGATGACAAAGGAACGACAGAGAGCAATATGGGCAATATATGTTTGGTGTAGGAGAACAGATGAACTTGTGGATGGCCCCAATGCAATGTATATGAATCCAAAAGTTCTTGATCGATGGGAAGAACGATTGGAAGACATTTTTGAAGGCTGCCCCTATGACTTATTGGATGCTGCTTTAAGTCACACAGTCTCCAAATTTCCCATAGACATGAAGCCATTCAGGGACATGATTGAAGGCATGAGAATGGACACTAAAAATGCTGCTCTCCATTTGGGAATTGGGAATCAACTTACTAATATTCTAAGAGATGTGGGAGAGGATGCAATGAGAGGGAGGGTATATCTTCCACAAGACGAGCTTACACAATTTGGATTATGCGACGAGGATATATTGAGAATGAGAGTGAGTGATGAGTGGAGAGAATTCATGAAAGAACAGATAAAAAGGGCGAGGTTCTATTTCAAACTAGCAGAAGAGGgAGCTTCTCAGCTTGACAAGGCCAGCCGTTGGCCAGTTTGGTCATCACTGATGTTGTACAGAGAAATATTGGAAGCAATTGAAGAAAATGATTACAACAATTTCACAAAGCGAGCATACGTAGGGAGGTCCAAGAAATTTCTTGCACTGCCTCTTGCTTACACCAAATCTATTTCACCACCCACTCTAGTCTTCAATTGA

Protein sequence

MKFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAMYMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTKNAALHLGIGNQLTNILRDVGEDAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDKASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLVFN*

Homology

[Close]

BLAST of Cucsa.153210.2 vs. Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.7e-97
Identity = 178/293 (60.75%), Postives = 211/293 (72.01%), Query Frame = 1


Query: 8   LEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAMYMNPKV 67
           L+EAY+ C +IC EYAKTFYLGT+LMT+ER+RAIWAIYVWCRRTDELVDGPNA Y+ P  
Sbjct: 115 LKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPTA 174

Query: 68  LDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---------- 127
           LDRWE+RLED+F G PYD+LDAALS T+S+FPID++PFRDMIEGMR D +          
Sbjct: 175 LDRWEKRLEDLFTGRPYDMLDAALSDTISRFPIDIQPFRDMIEGMRSDLRKTRYNNFDEL 234

Query: 128 ---------------------------------NAALHLGIGNQLTNILRDVGEDAMRGR 187
                                            +AAL LGI NQLTNILRDVGEDA RGR
Sbjct: 235 YMYCYYVAGTVGLMSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVGEDARRGR 294

Query: 188 VYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDKASRWPV 247
           +YLPQDEL Q GL DEDI +  V++ WR FMK QIKRAR +F+ AE G ++L +ASRWPV
Sbjct: 295 IYLPQDELAQAGLSDEDIFKGVVTNRWRNFMKRQIKRARMFFEEAERGVNELSQASRWPV 354

Query: 248 WSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLVFN 258
           W+SL+LYR+IL+ IE NDYNNFTKRAYVG+ KK LALP+AY KS+  P  + N
Sbjct: 355 WASLLLYRQILDEIEANDYNNFTKRAYVGKGKKLLALPVAYGKSLLLPCSLRN 407

[Close]

BLAST of Cucsa.153210.2 vs. Swiss-Prot
Match: PSY_NARPS (Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 7.7e-95
Identity = 172/288 (59.72%), Postives = 206/288 (71.53%), Query Frame = 1


Query: 8   LEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAMYMNPKV 67
           L++AY+ C ++CAEYAKTFYLGTLLMT ER+RAIWAIYVWCRRTDELVDG NA ++ P  
Sbjct: 125 LKDAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGHNASHITPSA 184

Query: 68  LDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---------- 127
           LDRWE RLED+F G PYD+ DAALS TVS+FP+D++PF DM+EGMRMD K          
Sbjct: 185 LDRWEARLEDLFAGRPYDMFDAALSDTVSRFPVDIQPFMDMVEGMRMDLKKSRYKNFDEL 244

Query: 128 ---------------------------------NAALHLGIGNQLTNILRDVGEDAMRGR 187
                                            NAAL LGI NQLTNILRDVGEDA RGR
Sbjct: 245 YLYCYYVAGTVGLMSVPVMGIAPESLAEAESVYNAALALGIANQLTNILRDVGEDARRGR 304

Query: 188 VYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDKASRWPV 247
           +YLPQDEL + GL DED+   +V+D+WR FMK QIKRAR +F+ AE+G ++L +ASRWPV
Sbjct: 305 IYLPQDELAEAGLSDEDVFTGKVTDKWRSFMKRQIKRARTFFEQAEKGVTELSQASRWPV 364

Query: 248 WSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPP 253
           W+SL+LYR+IL+ IE NDYNNFTKRAYV + K+  ALPLAY KS+  P
Sbjct: 365 WASLLLYRQILDEIEANDYNNFTKRAYVSKVKRLAALPLAYGKSLLIP 412

[Close]

BLAST of Cucsa.153210.2 vs. Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2)

HSP 1 Score: 341.7 bits (875), Expect = 7.2e-93
Identity = 171/287 (59.58%), Postives = 203/287 (70.73%), Query Frame = 1


Query: 6   SFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAMYMNP 65
           S L EAY+ C ++CAEYAKTFYLGTLLMT ER++AIWAIYVWCRRTDELVDGPNA ++ P
Sbjct: 126 SLLGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDGPNASHITP 185

Query: 66  KVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTKNAALH--- 125
             LDRWE RLED+F G P+D+LDAAL+ TV+++P+D++PFRDMIEGMRMD K +      
Sbjct: 186 MALDRWEARLEDLFRGRPFDMLDAALADTVARYPVDIQPFRDMIEGMRMDLKKSRYQNFD 245

Query: 126 --------------------LGIG--------------------NQLTNILRDVGEDAMR 185
                               +GI                     NQLTNILRDVGEDA R
Sbjct: 246 DLYLYCYYVAGTVGLMSVPVMGIDPKSKATTESVYNAALALGIANQLTNILRDVGEDARR 305

Query: 186 GRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDKASRW 245
           GRVYLPQDEL Q GL DEDI   +V+D+WR FMK Q+KRAR +F  AE+G ++L  ASRW
Sbjct: 306 GRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMFFDEAEKGVTELSAASRW 365

Query: 246 PVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSI 250
           PVW+SL+LYR IL+ IE NDYNNFTKRAYVG+ KK  ALPLAY KS+
Sbjct: 366 PVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAYAKSV 412

[Close]

BLAST of Cucsa.153210.2 vs. Swiss-Prot
Match: PSY_ONCHC (Phytoene synthase, chloroplastic OS=Oncidium hybrid cultivar GN=PSY PE=2 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.6e-90
Identity = 167/290 (57.59%), Postives = 204/290 (70.34%), Query Frame = 1


Query: 8   LEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAMYMNPKV 67
           L EAY+ C +IC EYAKTFYLGTLLMT ER+RAIWAIYVWCRRTDELVDGPNA ++ P  
Sbjct: 115 LNEAYDRCGQICEEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITPSA 174

Query: 68  LDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTKNAALH----- 127
           LDRWE RLED+F G PYD+LDA+LS TV  FP+D++PF+DMIEGMRMD K +        
Sbjct: 175 LDRWEARLEDLFAGRPYDMLDASLSDTVVNFPVDIQPFKDMIEGMRMDLKKSRYKNFDEL 234

Query: 128 ------------------LGI--------------------GNQLTNILRDVGEDAMRGR 187
                             +GI                     NQLTNILRDVGED  RGR
Sbjct: 235 YLYCYYVAGTVGLMSVPVMGIDPESDATTESVYNAALSLGIANQLTNILRDVGEDTRRGR 294

Query: 188 VYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDKASRWPV 247
           VYLPQDEL + GL DEDI   +V+D WR FMK QIKRAR +F+ AE+G ++L++ASRWPV
Sbjct: 295 VYLPQDELAEAGLSDEDIFNGKVTDRWRNFMKNQIKRARTFFQEAEKGIAELNQASRWPV 354

Query: 248 WSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTL 255
            +SL+LYR+IL+ IE NDYNNFTKRAYV ++KK +A+P+AY +S+  P++
Sbjct: 355 LASLLLYRQILDEIEANDYNNFTKRAYVSKAKKLMAVPVAYGRSLIRPSM 404

[Close]

BLAST of Cucsa.153210.2 vs. Swiss-Prot
Match: PSY1_SOLLC (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 6.1e-84
Identity = 162/289 (56.06%), Postives = 190/289 (65.74%), Query Frame = 1


Query: 8   LEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAMYMNPKV 67
           L EAY+ C ++CAEYAKTF LGT+LMT ER+RAIWAIYVWCRRTDELVDGPNA Y+ P  
Sbjct: 117 LSEAYDRCGEVCAEYAKTFNLGTMLMTPERRRAIWAIYVWCRRTDELVDGPNASYITPAA 176

Query: 68  LDRWEERLEDIFEGCPYDLLDAALS----------------------------------- 127
           LDRWE RLED+F G P+D+LD ALS                                   
Sbjct: 177 LDRWENRLEDVFNGRPFDMLDGALSDTVSNFPVDIQPFRDMIEGMRMDLRKSRYKNFDEL 236

Query: 128 --------HTVSKFPIDMKPFRDMIEGMRMDTKNAALHLGIGNQLTNILRDVGEDAMRGR 187
                    TV    + +       +       NAAL LGI NQLTNILRDVGEDA RGR
Sbjct: 237 YLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGR 296

Query: 188 VYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDKASRWPV 247
           VYLPQDEL Q GL DEDI   RV+D+WR FMK+QI RAR +F  AE+G ++L  ASR+PV
Sbjct: 297 VYLPQDELAQAGLSDEDIFAGRVTDKWRIFMKKQIHRARKFFDEAEKGVTELSSASRFPV 356

Query: 248 WSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPT 254
           W+SL+LYR+IL+ IE NDYNNFTKRAYV +SKK +ALP+AY KS+ PPT
Sbjct: 357 WASLVLYRKILDEIEANDYNNFTKRAYVSKSKKLIALPIAYAKSLVPPT 405

[Close]

BLAST of Cucsa.153210.2 vs. TrEMBL
Match: A0A0A0KZ43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280510 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 5.0e-109
Identity = 221/301 (73.42%), Postives = 230/301 (76.41%), Query Frame = 1


Query: 1   MKFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNA 60
           MKFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNA
Sbjct: 86  MKFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNA 145

Query: 61  MYMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTKNA- 120
           MYMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK   
Sbjct: 146 MYMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTKKCR 205

Query: 121 -----ALHL------GIGNQLTNILRDVGEDAMRG--RVYLPQ------DELTQFGLCD- 180
                 L+L      G    ++  +  +  D+      VY         ++LT   L D 
Sbjct: 206 YENFEELYLYCYYVAGTVGLMSVPVMGIAPDSSLSTHTVYSAALHLGIGNQLTNI-LRDV 265

Query: 181 -EDILRMRVS----------------------DEWREFMKEQIKRARFYFKLAEEGASQL 240
            ED +R RV                       DEWREFMKEQIKRARFYFKLAEEGASQL
Sbjct: 266 GEDAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQL 325

Query: 241 DKASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLVF 258
           DKASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLVF
Sbjct: 326 DKASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLVF 385

[Close]

BLAST of Cucsa.153210.2 vs. TrEMBL
Match: G7JA42_MEDTR (Squalene/phytoene synthase OS=Medicago truncatula GN=MTR_3g083630 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 8.5e-109
Identity = 195/294 (66.33%), Postives = 228/294 (77.55%), Query Frame = 1


Query: 2   KFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAM 61
           +F+ SFL++AYE CR IC+EYAKTFYLGTLLMT+ERQ+AIWAIYVWCRRTDELVDGPNA 
Sbjct: 82  QFEPSFLKDAYEMCRNICSEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAD 141

Query: 62  YMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---- 121
           YM+  VLDRWEERL DIF GCPYD+LDAAL+ T+SKFP+D+KPFRDMIEGMRMDT+    
Sbjct: 142 YMSSAVLDRWEERLHDIFNGCPYDMLDAALTDTISKFPLDIKPFRDMIEGMRMDTRKSRY 201

Query: 122 ---------------------------------------NAALHLGIGNQLTNILRDVGE 181
                                                   +AL+LGIGNQLTNILRDVGE
Sbjct: 202 KNFEELYLYCYYVAGTVGLMSVPVMGIAPESLIPAQSVYKSALYLGIGNQLTNILRDVGE 261

Query: 182 DAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDK 241
           DA+RGRVYLPQDEL +FGLCD D+   +VS+ WREFMK+QI RARFYF  AEEGAS LDK
Sbjct: 262 DALRGRVYLPQDELGEFGLCDNDVFSRKVSERWREFMKQQIARARFYFNSAEEGASHLDK 321

Query: 242 ASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPP 253
           ASRWPVWSSL+LYR+IL+AIE+NDY+N TKRAYVGR++KF++LP AYT+S+S P
Sbjct: 322 ASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTEKFVSLPAAYTRSLSIP 375

[Close]

BLAST of Cucsa.153210.2 vs. TrEMBL
Match: B9GLH2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04490g PE=4 SV=2)

HSP 1 Score: 401.4 bits (1030), Expect = 8.5e-109
Identity = 198/297 (66.67%), Postives = 230/297 (77.44%), Query Frame = 1


Query: 2   KFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAM 61
           +F  +FLEEAYE CR ICAEYAKTFYLGT LMT+ERQ+A WAIYVWCRRTDELVDGPNA+
Sbjct: 84  EFHPAFLEEAYERCRNICAEYAKTFYLGTRLMTEERQKATWAIYVWCRRTDELVDGPNAV 143

Query: 62  YMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---- 121
            M+  VLDRWEERL+DIF+G PYD+LDAAL+ T+SKFP+D+KPFRDMIEGMRMDT+    
Sbjct: 144 LMSTAVLDRWEERLQDIFDGRPYDMLDAALTDTISKFPLDIKPFRDMIEGMRMDTRKFRY 203

Query: 122 ---------------------------------------NAALHLGIGNQLTNILRDVGE 181
                                                  NAAL+LGIGNQLTNILRDVGE
Sbjct: 204 DNFQELYLYCYYVAGTVGLMSVPVMGIAAESEASAQSIYNAALYLGIGNQLTNILRDVGE 263

Query: 182 DAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDK 241
           DA+RGRVYLPQDEL QFGLCD+D+   +V+D WREFMKEQI RARFYF LAEEGAS+L+K
Sbjct: 264 DALRGRVYLPQDELAQFGLCDQDVFARKVTDGWREFMKEQIIRARFYFNLAEEGASKLEK 323

Query: 242 ASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLV 256
           ASRWPVWSSL++Y++IL+AIE+NDY+NFTKRAYVGR+KK L LPLAYTK+ S   L+
Sbjct: 324 ASRWPVWSSLLVYQKILDAIEDNDYDNFTKRAYVGRTKKLLTLPLAYTKAQSMSRLI 380

[Close]

BLAST of Cucsa.153210.2 vs. TrEMBL
Match: B9SM48_RICCO (Phytoene synthase, chloroplast, putative OS=Ricinus communis GN=RCOM_0878400 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.1e-108
Identity = 201/297 (67.68%), Postives = 228/297 (76.77%), Query Frame = 1


Query: 2   KFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAM 61
           +F   FLEEAY  C+ ICAEYAKTFYLGTLLMT+ERQ+AIWAIYVWCRRTDELVDGPNA 
Sbjct: 85  EFHPLFLEEAYARCKNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAG 144

Query: 62  YMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---- 121
           YM+  VLDRWEERL++IF+G PYD+LDAAL+ TV +FP+D+KPF DMIEGMRMDTK    
Sbjct: 145 YMSSAVLDRWEERLQNIFDGQPYDMLDAALTDTVFRFPLDIKPFMDMIEGMRMDTKKCRY 204

Query: 122 ---------------------------------------NAALHLGIGNQLTNILRDVGE 181
                                                  +AAL+LGIGNQLTNILRDVGE
Sbjct: 205 EDFEELYRYCYYVAGTVGLMSVPVMGIAPEACVSAQTIYSAALNLGIGNQLTNILRDVGE 264

Query: 182 DAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDK 241
           DAMRGRVYLPQDEL QFGL DED+   +V+D WREFMKEQI RAR+YF LAEEGASQLDK
Sbjct: 265 DAMRGRVYLPQDELAQFGLRDEDVFGGKVTDRWREFMKEQITRARYYFNLAEEGASQLDK 324

Query: 242 ASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLV 256
           ASRWPVWS L+LYREIL+AIE+NDY+N TKRAYVGR+KK L LPLAYTK+ SPP+L+
Sbjct: 325 ASRWPVWSCLILYREILDAIEDNDYDNLTKRAYVGRTKKLLTLPLAYTKAQSPPSLI 381

[Close]

BLAST of Cucsa.153210.2 vs. TrEMBL
Match: U5GRI3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21310g PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 9.4e-108
Identity = 195/298 (65.44%), Postives = 229/298 (76.85%), Query Frame = 1


Query: 2   KFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAM 61
           +F   FLE AY  CR ICAEYAKTFYLGTLLMT+ERQ+AIWAIYVWCRRTDELVDGPNA+
Sbjct: 84  EFHPMFLEGAYGRCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAV 143

Query: 62  YMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---- 121
           +M+  VLDRWEERL+DIF+G PYD+LDAAL+ T+SKF +D+KPFRDMIEGMRMDT+    
Sbjct: 144 HMSTAVLDRWEERLQDIFDGFPYDMLDAALTDTISKFSLDIKPFRDMIEGMRMDTRKFRY 203

Query: 122 ---------------------------------------NAALHLGIGNQLTNILRDVGE 181
                                                  NAAL+LGIGNQLTNILRDVGE
Sbjct: 204 DNFQELYMYCYYVAGTVGLMSVPVMGIAAESSVSALSIYNAALYLGIGNQLTNILRDVGE 263

Query: 182 DAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDK 241
           DA+RGRVYLPQDEL QFGLCD+D+   +V+DEWRE MKEQI RARFYF LAEEGASQL+K
Sbjct: 264 DALRGRVYLPQDELAQFGLCDKDVFARKVTDEWRELMKEQITRARFYFNLAEEGASQLEK 323

Query: 242 ASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLVF 257
           ASRWPVWSSL++YR+IL+AIE+NDY+NFTKRA+VGR+KK   LPLAY+K+    +++F
Sbjct: 324 ASRWPVWSSLLIYRKILDAIEDNDYDNFTKRAFVGRTKKLFTLPLAYSKAQPMSSMIF 381

[Close]

BLAST of Cucsa.153210.2 vs. TAIR10
Match: AT5G17230.3 (AT5G17230.3 PHYTOENE SYNTHASE)

HSP 1 Score: 331.6 bits (849), Expect = 4.2e-91
Identity = 171/302 (56.62%), Postives = 203/302 (67.22%), Query Frame = 1


Query: 6   SFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYV---------------WCRR 65
           S L EAY+ C ++CAEYAKTFYLGTLLMT ER++AIWAIYV               WCRR
Sbjct: 126 SLLGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVMLKVDFYKQSIVALVWCRR 185

Query: 66  TDELVDGPNAMYMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIE 125
           TDELVDGPNA ++ P  LDRWE RLED+F G P+D+LDAAL+ TV+++P+D++PFRDMIE
Sbjct: 186 TDELVDGPNASHITPMALDRWEARLEDLFRGRPFDMLDAALADTVARYPVDIQPFRDMIE 245

Query: 126 GMRMDTKNAALH-----------------------LGIG--------------------N 185
           GMRMD K +                          +GI                     N
Sbjct: 246 GMRMDLKKSRYQNFDDLYLYCYYVAGTVGLMSVPVMGIDPKSKATTESVYNAALALGIAN 305

Query: 186 QLTNILRDVGEDAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFK 245
           QLTNILRDVGEDA RGRVYLPQDEL Q GL DEDI   +V+D+WR FMK Q+KRAR +F 
Sbjct: 306 QLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMFFD 365

Query: 246 LAEEGASQLDKASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTK 250
            AE+G ++L  ASRWPVW+SL+LYR IL+ IE NDYNNFTKRAYVG+ KK  ALPLAY K
Sbjct: 366 EAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAYAK 425

[Close]

BLAST of Cucsa.153210.2 vs. NCBI nr
Match: gi|470120189|ref|XP_004296190.1| (PREDICTED: phytoene synthase 2, chloroplastic-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 409.1 bits (1050), Expect = 5.9e-111
Identity = 201/297 (67.68%), Postives = 229/297 (77.10%), Query Frame = 1


Query: 2   KFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAM 61
           +F  SFLEEAY+ CR ICAEYAKTFYLGTLLMT+ERQ+AIWAIYVWCRRTDELVDGPN+ 
Sbjct: 82  QFDPSFLEEAYQRCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNSG 141

Query: 62  YMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---- 121
           +MN +VLD WEERLEDIFEG PYD+LDAAL+HTV  FP+D+KPFRDMIEGMRMDT+    
Sbjct: 142 HMNSEVLDSWEERLEDIFEGRPYDMLDAALTHTVLSFPLDIKPFRDMIEGMRMDTRKCRY 201

Query: 122 ---------------------------------------NAALHLGIGNQLTNILRDVGE 181
                                                  +AAL+LGIGNQLTNILRDVGE
Sbjct: 202 QNFQELYLYCYYVAGTVGLMSVPVMGIAPDSLNSTQSTYDAALYLGIGNQLTNILRDVGE 261

Query: 182 DAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDK 241
           DA RGRVYLPQDEL QFGLCD D+   +V+D+WR+FMKEQI RARFYF LAEEGASQLDK
Sbjct: 262 DAARGRVYLPQDELAQFGLCDNDVFARKVTDQWRKFMKEQISRARFYFNLAEEGASQLDK 321

Query: 242 ASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLV 256
            SRWPVWSSL++YR IL+AIEENDY+N TKRAYVGR+KK L LP+AYTKS+  P+L+
Sbjct: 322 DSRWPVWSSLLIYRNILDAIEENDYDNLTKRAYVGRAKKLLMLPMAYTKSLHTPSLI 378

[Close]

BLAST of Cucsa.153210.2 vs. NCBI nr
Match: gi|449448822|ref|XP_004142164.1| (PREDICTED: phytoene synthase 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 7.2e-109
Identity = 221/301 (73.42%), Postives = 230/301 (76.41%), Query Frame = 1


Query: 1   MKFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNA 60
           MKFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNA
Sbjct: 86  MKFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNA 145

Query: 61  MYMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTKNA- 120
           MYMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK   
Sbjct: 146 MYMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTKKCR 205

Query: 121 -----ALHL------GIGNQLTNILRDVGEDAMRG--RVYLPQ------DELTQFGLCD- 180
                 L+L      G    ++  +  +  D+      VY         ++LT   L D 
Sbjct: 206 YENFEELYLYCYYVAGTVGLMSVPVMGIAPDSSLSTHTVYSAALHLGIGNQLTNI-LRDV 265

Query: 181 -EDILRMRVS----------------------DEWREFMKEQIKRARFYFKLAEEGASQL 240
            ED +R RV                       DEWREFMKEQIKRARFYFKLAEEGASQL
Sbjct: 266 GEDAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQL 325

Query: 241 DKASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLVF 258
           DKASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLVF
Sbjct: 326 DKASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLVF 385

[Close]

BLAST of Cucsa.153210.2 vs. NCBI nr
Match: gi|357462675|ref|XP_003601619.1| (squalene/phytoene synthase [Medicago truncatula])

HSP 1 Score: 401.4 bits (1030), Expect = 1.2e-108
Identity = 195/294 (66.33%), Postives = 228/294 (77.55%), Query Frame = 1


Query: 2   KFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAM 61
           +F+ SFL++AYE CR IC+EYAKTFYLGTLLMT+ERQ+AIWAIYVWCRRTDELVDGPNA 
Sbjct: 82  QFEPSFLKDAYEMCRNICSEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAD 141

Query: 62  YMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---- 121
           YM+  VLDRWEERL DIF GCPYD+LDAAL+ T+SKFP+D+KPFRDMIEGMRMDT+    
Sbjct: 142 YMSSAVLDRWEERLHDIFNGCPYDMLDAALTDTISKFPLDIKPFRDMIEGMRMDTRKSRY 201

Query: 122 ---------------------------------------NAALHLGIGNQLTNILRDVGE 181
                                                   +AL+LGIGNQLTNILRDVGE
Sbjct: 202 KNFEELYLYCYYVAGTVGLMSVPVMGIAPESLIPAQSVYKSALYLGIGNQLTNILRDVGE 261

Query: 182 DAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDK 241
           DA+RGRVYLPQDEL +FGLCD D+   +VS+ WREFMK+QI RARFYF  AEEGAS LDK
Sbjct: 262 DALRGRVYLPQDELGEFGLCDNDVFSRKVSERWREFMKQQIARARFYFNSAEEGASHLDK 321

Query: 242 ASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPP 253
           ASRWPVWSSL+LYR+IL+AIE+NDY+N TKRAYVGR++KF++LP AYT+S+S P
Sbjct: 322 ASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTEKFVSLPAAYTRSLSIP 375

[Close]

BLAST of Cucsa.153210.2 vs. NCBI nr
Match: gi|566147192|ref|XP_002297643.2| (hypothetical protein POPTR_0001s04490g [Populus trichocarpa])

HSP 1 Score: 401.4 bits (1030), Expect = 1.2e-108
Identity = 198/297 (66.67%), Postives = 230/297 (77.44%), Query Frame = 1


Query: 2   KFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAM 61
           +F  +FLEEAYE CR ICAEYAKTFYLGT LMT+ERQ+A WAIYVWCRRTDELVDGPNA+
Sbjct: 84  EFHPAFLEEAYERCRNICAEYAKTFYLGTRLMTEERQKATWAIYVWCRRTDELVDGPNAV 143

Query: 62  YMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---- 121
            M+  VLDRWEERL+DIF+G PYD+LDAAL+ T+SKFP+D+KPFRDMIEGMRMDT+    
Sbjct: 144 LMSTAVLDRWEERLQDIFDGRPYDMLDAALTDTISKFPLDIKPFRDMIEGMRMDTRKFRY 203

Query: 122 ---------------------------------------NAALHLGIGNQLTNILRDVGE 181
                                                  NAAL+LGIGNQLTNILRDVGE
Sbjct: 204 DNFQELYLYCYYVAGTVGLMSVPVMGIAAESEASAQSIYNAALYLGIGNQLTNILRDVGE 263

Query: 182 DAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDK 241
           DA+RGRVYLPQDEL QFGLCD+D+   +V+D WREFMKEQI RARFYF LAEEGAS+L+K
Sbjct: 264 DALRGRVYLPQDELAQFGLCDQDVFARKVTDGWREFMKEQIIRARFYFNLAEEGASKLEK 323

Query: 242 ASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLV 256
           ASRWPVWSSL++Y++IL+AIE+NDY+NFTKRAYVGR+KK L LPLAYTK+ S   L+
Sbjct: 324 ASRWPVWSSLLVYQKILDAIEDNDYDNFTKRAYVGRTKKLLTLPLAYTKAQSMSRLI 380

[Close]

BLAST of Cucsa.153210.2 vs. NCBI nr
Match: gi|255572256|ref|XP_002527067.1| (PREDICTED: phytoene synthase 2, chloroplastic [Ricinus communis])

HSP 1 Score: 401.0 bits (1029), Expect = 1.6e-108
Identity = 201/297 (67.68%), Postives = 228/297 (76.77%), Query Frame = 1


Query: 2   KFQASFLEEAYESCRKICAEYAKTFYLGTLLMTKERQRAIWAIYVWCRRTDELVDGPNAM 61
           +F   FLEEAY  C+ ICAEYAKTFYLGTLLMT+ERQ+AIWAIYVWCRRTDELVDGPNA 
Sbjct: 85  EFHPLFLEEAYARCKNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAG 144

Query: 62  YMNPKVLDRWEERLEDIFEGCPYDLLDAALSHTVSKFPIDMKPFRDMIEGMRMDTK---- 121
           YM+  VLDRWEERL++IF+G PYD+LDAAL+ TV +FP+D+KPF DMIEGMRMDTK    
Sbjct: 145 YMSSAVLDRWEERLQNIFDGQPYDMLDAALTDTVFRFPLDIKPFMDMIEGMRMDTKKCRY 204

Query: 122 ---------------------------------------NAALHLGIGNQLTNILRDVGE 181
                                                  +AAL+LGIGNQLTNILRDVGE
Sbjct: 205 EDFEELYRYCYYVAGTVGLMSVPVMGIAPEACVSAQTIYSAALNLGIGNQLTNILRDVGE 264

Query: 182 DAMRGRVYLPQDELTQFGLCDEDILRMRVSDEWREFMKEQIKRARFYFKLAEEGASQLDK 241
           DAMRGRVYLPQDEL QFGL DED+   +V+D WREFMKEQI RAR+YF LAEEGASQLDK
Sbjct: 265 DAMRGRVYLPQDELAQFGLRDEDVFGGKVTDRWREFMKEQITRARYYFNLAEEGASQLDK 324

Query: 242 ASRWPVWSSLMLYREILEAIEENDYNNFTKRAYVGRSKKFLALPLAYTKSISPPTLV 256
           ASRWPVWS L+LYREIL+AIE+NDY+N TKRAYVGR+KK L LPLAYTK+ SPP+L+
Sbjct: 325 ASRWPVWSCLILYREILDAIEDNDYDNLTKRAYVGRTKKLLTLPLAYTKAQSPPSLI 381

The following BLAST results are available for this feature:

BLAST of Cucsa.153210.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSY_MAIZE	3.7e-97	60.75	Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1	[more]
PSY_NARPS	7.7e-95	59.72	Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1	[more]
PSY_ARATH	7.2e-93	59.58	Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2	[more]
PSY_ONCHC	2.6e-90	57.59	Phytoene synthase, chloroplastic OS=Oncidium hybrid cultivar GN=PSY PE=2 SV=1	[more]
PSY1_SOLLC	6.1e-84	56.06	Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2	[more]

BLAST of Cucsa.153210.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ43_CUCSA	5.0e-109	73.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280510 PE=4 SV=1	[more]
G7JA42_MEDTR	8.5e-109	66.33	Squalene/phytoene synthase OS=Medicago truncatula GN=MTR_3g083630 PE=4 SV=1	[more]
B9GLH2_POPTR	8.5e-109	66.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04490g PE=4 SV=2	[more]
B9SM48_RICCO	1.1e-108	67.68	Phytoene synthase, chloroplast, putative OS=Ricinus communis GN=RCOM_0878400 PE=...	[more]
U5GRI3_POPTR	9.4e-108	65.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21310g PE=4 SV=1	[more]

BLAST of Cucsa.153210.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17230.3	4.2e-91	56.62	PHYTOENE SYNTHASE	[more]

BLAST of Cucsa.153210.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|470120189\|ref\|XP_004296190.1\|	5.9e-111	67.68	PREDICTED: phytoene synthase 2, chloroplastic-like [Fragaria vesca subsp. vesca]	[more]
gi\|449448822\|ref\|XP_004142164.1\|	7.2e-109	73.42	PREDICTED: phytoene synthase 2, chloroplastic-like [Cucumis sativus]	[more]
gi\|357462675\|ref\|XP_003601619.1\|	1.2e-108	66.33	squalene/phytoene synthase [Medicago truncatula]	[more]
gi\|566147192\|ref\|XP_002297643.2\|	1.2e-108	66.67	hypothetical protein POPTR_0001s04490g [Populus trichocarpa]	[more]
gi\|255572256\|ref\|XP_002527067.1\|	1.6e-108	67.68	PREDICTED: phytoene synthase 2, chloroplastic [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002060	Squ/phyt_synthse
IPR008949	Isoprenoid_synthase_dom_sf
IPR019845	Squalene/phytoene_synthase_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0009058	biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016740	transferase activity
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0009536	plastid
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.153210	Cucsa.153210	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.153210.2	Cucsa.153210.2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.153210.2.CDS.1	Cucsa.153210.2.CDS.1	CDS
Cucsa.153210.2.CDS.2	Cucsa.153210.2.CDS.2	CDS
Cucsa.153210.2.CDS.3	Cucsa.153210.2.CDS.3	CDS
Cucsa.153210.2.CDS.4	Cucsa.153210.2.CDS.4	CDS
Cucsa.153210.2.CDS.5	Cucsa.153210.2.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.153210.2.three_prime_UTR.1	Cucsa.153210.2.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002060	Squalene/phytoene synthase	PFAM	PF00494	SQS_PSY	coord: 117..234 score: 1.6E-31coord: 22..118 score: 4.9
IPR008949	Isoprenoid synthase domain	GENE3D	G3DSA:1.10.600.10		coord: 117..250 score: 4.1E-55coord: 6..116 score: 3.4
IPR008949	Isoprenoid synthase domain	unknown	SSF48576	Terpenoid synthases	coord: 11..249 score: 9.93
IPR019845	Squalene/phytoene synthase, conserved site	PROSITE	PS01045	SQUALEN_PHYTOEN_SYN_2	coord: 123..148 scor
None	No IPR available	PANTHER	PTHR31480	FAMILY NOT NAMED	coord: 1..256 score: 1.8E
None	No IPR available	PANTHER	PTHR31480:SF9	SUBFAMILY NOT NAMED	coord: 1..256 score: 1.8E