Cucsa.152840.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.152840.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold01124 : 172643 .. 173787 (+)
Sequence length	832

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCCCACTCCCACTCAATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGAGAATCCGCTCCGATCCTCTTCGCTTTGGTGTTCTATCCTCTGCGCACATTGATCTCTCCATTGTTTCTCGTTTTTAATCTGATTTGTTCATCGGATTACTATTCCTCTAATTCTTACAGTAATCCGGTCTTTTTTTCCTTTTTTtATTTCCTCTTTTATCTTTTTTTTtGTACCGCGTCAGTGACGTAAAGAGCGTTTGGCAAATCGGATGTTTTTTTtGTACCTGTTTGTTCGTATTTGATTTATGCGTAATTTGTCTCTTGGTTGAATCGATTCGGTGTTTTTAATTGTTTTGGCATCGATTGATAGGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAATCTTTGACTAATACTGGACTTAAAACTCACCAATCTTTTTAAATTTCCACTCTTTTTTTATATCAAATTCTTTTGAACGAAACCGATTTCTGAGAGAGATTGATCGTCTCTAGCGTTTTGGAATTACAGTTTGTTGCCCATTTTTGTCCACAATCAACAATTTCCTCCTAGAAATTGGAATCAATTTCCTGACAAATAATTCATATTTGGTATCACTGATTAAAAAATTTATCAGAACCGGAAGCAGAAGCAGATGCATGATTCCAATTTCAAAACAAGTTTATTACTTACTCGCTCATAGAAGTGGATCGAAATAACATTTAATTGCAAAATGTGGATTTTAATTTTGTTATTAACCAATGTTTTCTAAGAAAGGAAAGTTTTCCTTATTAACATGAAAGAAGCAGAATCTCATTTAAAAAAaGAAAAAAGAAAaCTTGAAATTAAAAGGTACTAAAATGCTGCATCAATGGCAATCCTCCATATTCAATTCTACTGTGGCGTGCAATTACATGCGATGATCAAGGCCCTTGTTCGATGCAATTAGGGGAGATTCTTGAGAATTACAAACAATCTAAACAAAGTCG

mRNA sequence

CCTCCCACTCCCACTCAATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTgaagaagaggaagaaggagaagaagCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAATCTTTGACTAATACTGGACTTAAAACTCACCAATCTTTTTAAATTTCCACTCTTTTTTTATATCAAATTCTTTTGAACGAAACCGATTTCTGAGAGAGATTGATCGTCTCTAGCGTTTTGGAATTACAGTTTGTTGCCCATTTTTGTCCACAATCAACAATTTCCTCCTAGAAATTGGAATCAATTTCCTGACAAATAATTCATATTTGGTATCACTGATTAAAAAATTTATCAGAACCGGAAGCAGAAGCAGATGCATGATTCCAATTTCAAAACAAGTTTATTACTTACTCGCTCATAGAAGTGGATCGAAATAACATTTAATTGCAAAATGTGGATTTTAATTTTGTTATTAACCAATGTTTTCTAAGAAAGGAAAGTTTTCCTTATTAACATGAAAGAAGCAGAATCTCATTTAAAAAAAGAAAAAAGAAAACTTGAAATTAAAAGGTACTAAAATGCTGCATCAATGGCAATCCTCCATATTCAATTCTACTGTGGCGTGCAATTACATGCGATGATCAAGGCCCTTGTTCGATGCAATTAGGGGAGATTCTTGAGAATTACAAACAATCTAAACAAAGTCG

Coding sequence (CDS)

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

Protein sequence

MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQQLEKIRMDTTDQLAA*

Homology

[Close]

BLAST of Cucsa.152840.1 vs. TrEMBL
Match: A0A0A0L0C4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 76
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

[Close]

BLAST of Cucsa.152840.1 vs. NCBI nr
Match: gi|700198874|gb|KGN54032.1| (hypothetical protein Csa_4G269150 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 76
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

The following BLAST results are available for this feature:

BLAST of Cucsa.152840.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0C4_CUCSA	1.5e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269150 PE=4 SV=1	[more]

BLAST of Cucsa.152840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198874\|gb\|KGN54032.1\|	2.2e-37	100.00	hypothetical protein Csa_4G269150 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.152840	Cucsa.152840	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.152840.1	Cucsa.152840.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.152840.1.five_prime_UTR.1	Cucsa.152840.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.152840.1.CDS.1	Cucsa.152840.1.CDS.1	CDS
Cucsa.152840.1.CDS.2	Cucsa.152840.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.152840.1.three_prime_UTR.1	Cucsa.152840.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..72 scor