Cucsa.151260.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTTATCTTGGAAAACCCTTTGATTTCTTTCAAACCAAACCTCAACTAAGAGAGCTTTTACGCCTTTACAGTGTTTACTGCTTTTACCCACAACAGTTCAGCTGTCTTCTTCAAGGCTGGACTGGCAAGGATTTGAGACACATTGTCCTTAAAATCTTGATTAAACACCCAACAAATATTAAAGGTTTGGAGAAGGTGGAACCAGCCTTTAGATGCAAATACACAGTCAATTAAAAGGTAGTGGATATTTTCCAGATTATCAACACAAAGGGGGCAAATGTGAGGTGAAAGAGCATGGGAGGGAAGCTTTCTTTGAAGTACTGATGCACAATTTAAGTTTCTGAACAGCACAATCCATATGGAGATGTTTACCCTTCTTGGATTGTTAGATTGCCAATGCCTTTTGTACAGAGAAATATCTATCGGAGAAGATGTAGAAAGATGCTTAACCAAAGATTTTACCGAGAAGGAACCTGAGGTTTCATGGGACCAAAACCTTCAACCCGAAATGGAGGATGGCTGTGAGGAAGAAATCTAATTTAACAAGGATGGGAAGTCTAATATTTCCTCACCATTAAGCAGTCTTCTGAAATAAATGGACCAAGAGCTGGTAGAAGAGTCCCAATGATCAAAATTTGACCCATTTGGAATGAGTGCAATCCTAACCGGTCTTGGAAATTTACACTCCAAGGTAATTCTGTCCAACCAAGGGTGCTTCCAAAATAGTATTCTGCTGCCACCACCTAATTTAAAGAGGGCCAATGAATCAAATTTGCATCATTGCCTTGAAAATTGTACATGTCACATATCTGTGCCCGTGCCATGTTTGAGATACAGATATTCAGATAATGATATTTATTATAATTTACTGCATTGCCTGGTTGACTTCTTTTCTCTTGTAGGTTTCTTTCTCACTCTATAGGTTTTGTACAGTAGAAGGTTCTGATTTTTTGCATCTTGAATCTCTTTTTTATATTCTGTTTGAAGGGCCTGGAAAGTTTAGGCAACATGAAAATTTCTTCTACCCTGAAAGGTATTTCCCAACAAGTACTAAAATATAAGAATAAGGCAACTGTAACGCAAATATGCACAGTATATCAGAGTTTAGTGGATAGTGCCCATCTCAAAGATAGACAGTTCGATTCAGGTTGACCTAAAAAATTTCAGCCTTTCAGGTGTATATCCCAATTGGATAACAATGTGGCACGATTAGGAATGCATCTAAAGTCTAAACCATGTTCTAGTTATGATTTCATATTTTTtATCCCATTTGCATTAATTTGTCGAAATGGTTTGTAACATCAACAAAGCTAAATTATTAATTGTCTTCTCATGCCTCTGTTGAGTTGGATTTTTAATATGATTTGTTTTTTtCTGTTGATTTCTTGTCCACCTAGGACTCTATTTGGGATTCACCCTCTCATGCTAAAGCAGAACATACGGATGGTTATGGAGCGTATAAAATTTGTGCCTGCAGAAGTTGTGGAGAGAAAGCAGAAGGAATTGATTGTCTGGTTTGTGACTCATGCGAGGAAATTTACCATATATCCTGCATCAAACCTCCCGTCAAAGAGATTCCTCTTAAGAGTTGGTACTGTGCTACTTGCATTGCAAGTGGATTTAGTTTGCGTCATGACAACTGTGTAGTGTGTGACAGGTTGAATACACCCACGACGCTAGCCAATGGAGTTGATGGAATTCTGGAAACAAGTGAACACAATCATTTTGATGGGGACGAGAATCCGAAGTATTGTATGGATGATGGTACTGAACAACTGAAGGACGGAAAAGATTTGGGCCCTTGCAAAATTTGTGGAAATGAAGTAGAAGGTGATGAGAAATATATAATATGCAGCCACCTGTTCTGCCCTCATAAATGCTATCACACCAGGTGCTTGACTAAAAAGCAGTTAAAATCTTACGATGCATGCTGGTATTGCCCTTCTTGTCTTTGCAGAGCATGCCTCATAAATCAAGACGATGACAAGATTGTTTTATGTGATGGCTGTGATCACGGATTCCACATTTATTGTATGAGACCCCCACTTGCTGCAATTCCTAAAGGAAAaTGGTTTTGTAGCAAATGTGCAGCTGGAATCCAGGCAATACGCAGTGTAAAAATGGCATATGAGAATTTTGAAAACAAGCAAAGTAAGAGAGGTAAAGATACATGTGGAAATTCGGGCAAGAAACGGATCAATGGAGGTGATGAGGAATCAGATATAGGAAGGGGGGgAATGGATATGCTTCTCACTGCAGCCAAGACTCTAAATTATGAAGAGG atggtttatcttggaaaaccctttgatttctttcaaaccaaacctcaactaagagagcttttacgcctttacagtgtttactgcttttacccacaacagttcagctgtcttcttcaaggctggactggcaaggatttgagacacattgtccttaaaatcttgattaaacacccaacaaatattaaaggtttggagaaggtggaaccagcctttagatgcaaatacacaGACTCTATTTGGGATTCACCCTCTCATGCTAAAGCAGAACATACGGATGGTTATGGAGCGTATAAAATTTGTGCCTGCAGAAGTTGTGGAGAGAAAGCAGAAGGAATTGATTGTCTGGTTTGTGACTCATGCGAGGAAATTTACCATATATCCTGCATCAAACCTCCCGTCAAAGAGATTCCTCTTAAGAGTTGGTACTGTGCTACTTGCATTGCAAGTGGATTTAGTTTGCGTCATGACAACTGTGTAGTGTGTGACAGGTTGAATACACCCACGACGCTAGCCAATGGAGTTGATGGAATTCTGGAAACAAGTGAACACAATCATTTTGATGGGGACGAGAATCCGAAGTATTGTATGGATGATGGTACTGAACAACTGAAGGACGGAAAAGATTTGGGCCCTTGCAAAATTTGTGGAAATGAAGTAGAAGGTGATGAGAAATATATAATATGCAGCCACCTGTTCTGCCCTCATAAATGCTATCACACCAGGTGCTTGACTAAAAAGCAGTTAAAATCTTACGATGCATGCTGGTATTGCCCTTCTTGTCTTTGCAGAGCATGCCTCATAAATCAAGACGATGACAAGATTGTTTTATGTGATGGCTGTGATCACGGATTCCACATTTATTGTATGAGACCCCCACTTGCTGCAATTCCTAAAGGAAAATGGTTTTGTAGCAAATGTGCAGCTGGAATCCAGGCAATACGCAGTGTAAAAATGGCATATGAGAATTTTGAAAACAAGCAAAGTAAGAGAGGTAAAGATACATGTGGAAATTCGGGCAAGAAACGGATCAATGGAGGTGATGAGGAATCAGATATAGGAAGGGGGGGAATGGATATGCTTCTCACTGCAGCCAAGACTCTAAATTATGAAGAGG ATGGTTTATCTTGGAAAACCCTTTGATTTCTTTCAAACCAAACCTCAACTAAGAGAGCTTTTACGCCTTTACAGTGTTTACTGCTTTTACCCACAACAGTTCAGCTGTCTTCTTCAAGGCTGGACTGGCAAGGATTTGAGACACATTGTCCTTAAAATCTTGATTAAACACCCAACAAATATTAAAGGTTTGGAGAAGGTGGAACCAGCCTTTAGATGCAAATACACAGACTCTATTTGGGATTCACCCTCTCATGCTAAAGCAGAACATACGGATGGTTATGGAGCGTATAAAATTTGTGCCTGCAGAAGTTGTGGAGAGAAAGCAGAAGGAATTGATTGTCTGGTTTGTGACTCATGCGAGGAAATTTACCATATATCCTGCATCAAACCTCCCGTCAAAGAGATTCCTCTTAAGAGTTGGTACTGTGCTACTTGCATTGCAAGTGGATTTAGTTTGCGTCATGACAACTGTGTAGTGTGTGACAGGTTGAATACACCCACGACGCTAGCCAATGGAGTTGATGGAATTCTGGAAACAAGTGAACACAATCATTTTGATGGGGACGAGAATCCGAAGTATTGTATGGATGATGGTACTGAACAACTGAAGGACGGAAAAGATTTGGGCCCTTGCAAAATTTGTGGAAATGAAGTAGAAGGTGATGAGAAATATATAATATGCAGCCACCTGTTCTGCCCTCATAAATGCTATCACACCAGGTGCTTGACTAAAAAGCAGTTAAAATCTTACGATGCATGCTGGTATTGCCCTTCTTGTCTTTGCAGAGCATGCCTCATAAATCAAGACGATGACAAGATTGTTTTATGTGATGGCTGTGATCACGGATTCCACATTTATTGTATGAGACCCCCACTTGCTGCAATTCCTAAAGGAAAaTGGTTTTGTAGCAAATGTGCAGCTGGAATCCAGGCAATACGCAGTGTAAAAATGGCATATGAGAATTTTGAAAACAAGCAAAGTAAGAGAGGTAAAGATACATGTGGAAATTCGGGCAAGAAACGGATCAATGGAGGTGATGAGGAATCAGATATAGGAAGGGGGGgAATGGATATGCTTCTCACTGCAGCCAAGACTCTAAATTATGAAGAGG MVYLGKPFDFFQTKPQLRELLRLYSVYCFYPQQFSCLLQGWTGKDLRHIVLKILIKHPTNIKGLEKVEPAFRCKYTDSIWDSPSHAKAEHTDGYGAYKICACRSCGEKAEGIDCLVCDSCEEIYHISCIKPPVKEIPLKSWYCATCIASGFSLRHDNCVVCDRLNTPTTLANGVDGILETSEHNHFDGDENPKYCMDDGTEQLKDGKDLGPCKICGNEVEGDEKYIICSHLFCPHKCYHTRCLTKKQLKSYDACWYCPSCLCRACLINQDDDKIVLCDGCDHGFHIYCMRPPLAAIPKGKWFCSKCAAGIQAIRSVKMAYENFENKQSKRGKDTCGNSGKKRINGGDEESDIGRGGMDMLLTAAKTLNYEEX
BLAST of Cucsa.151260.1 vs. Swiss-Prot
Match: KMT2D_MOUSE (Histone-lysine N-methyltransferase 2D OS=Mus musculus GN=Kmt2d PE=1 SV=2) HSP 1 Score: 77.4 bits (189), Expect = 3.6e-13 Identity = 44/146 (30.14%), Postives = 66/146 (45.21%), Query Frame = 1
HSP 2 Score: 74.3 bits (181), Expect = 3.1e-12 Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 1
HSP 3 Score: 55.5 bits (132), Expect = 1.5e-06 Identity = 19/45 (42.22%), Postives = 30/45 (66.67%), Query Frame = 1
HSP 4 Score: 49.7 bits (117), Expect = 8.1e-05 Identity = 17/56 (30.36%), Postives = 29/56 (51.79%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. Swiss-Prot
Match: KMT2D_HUMAN (Histone-lysine N-methyltransferase 2D OS=Homo sapiens GN=KMT2D PE=1 SV=2) HSP 1 Score: 76.6 bits (187), Expect = 6.2e-13 Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 1
HSP 2 Score: 71.6 bits (174), Expect = 2.0e-11 Identity = 33/99 (33.33%), Postives = 48/99 (48.48%), Query Frame = 1
HSP 3 Score: 53.5 bits (127), Expect = 5.6e-06 Identity = 18/45 (40.00%), Postives = 29/45 (64.44%), Query Frame = 1
HSP 4 Score: 49.7 bits (117), Expect = 8.1e-05 Identity = 17/56 (30.36%), Postives = 29/56 (51.79%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. Swiss-Prot
Match: KDM5C_HUMAN (Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2) HSP 1 Score: 75.5 bits (184), Expect = 1.4e-12 Identity = 37/110 (33.64%), Postives = 55/110 (50.00%), Query Frame = 1
HSP 2 Score: 55.1 bits (131), Expect = 1.9e-06 Identity = 23/64 (35.94%), Postives = 33/64 (51.56%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. Swiss-Prot
Match: KMT2C_MOUSE (Histone-lysine N-methyltransferase 2C OS=Mus musculus GN=Kmt2c PE=1 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 1.8e-12 Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 1
HSP 2 Score: 67.8 bits (164), Expect = 2.9e-10 Identity = 35/119 (29.41%), Postives = 58/119 (48.74%), Query Frame = 1
HSP 3 Score: 57.4 bits (137), Expect = 3.9e-07 Identity = 24/67 (35.82%), Postives = 37/67 (55.22%), Query Frame = 1
HSP 4 Score: 50.1 bits (118), Expect = 6.2e-05 Identity = 17/55 (30.91%), Postives = 29/55 (52.73%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. Swiss-Prot
Match: KMT2C_HUMAN (Histone-lysine N-methyltransferase 2C OS=Homo sapiens GN=KMT2C PE=1 SV=3) HSP 1 Score: 75.1 bits (183), Expect = 1.8e-12 Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 1
HSP 2 Score: 67.8 bits (164), Expect = 2.9e-10 Identity = 35/119 (29.41%), Postives = 58/119 (48.74%), Query Frame = 1
HSP 3 Score: 58.5 bits (140), Expect = 1.8e-07 Identity = 25/67 (37.31%), Postives = 37/67 (55.22%), Query Frame = 1
HSP 4 Score: 50.1 bits (118), Expect = 6.2e-05 Identity = 17/55 (30.91%), Postives = 29/55 (52.73%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TrEMBL
Match: A0A0A0K3U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G219240 PE=4 SV=1) HSP 1 Score: 652.5 bits (1682), Expect = 3.1e-184 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TrEMBL
Match: A0A059C2D6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00982 PE=4 SV=1) HSP 1 Score: 353.2 bits (905), Expect = 3.8e-94 Identity = 172/303 (56.77%), Postives = 206/303 (67.99%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TrEMBL
Match: A0A068UUJ9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035266001 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 2.1e-92 Identity = 157/293 (53.58%), Postives = 197/293 (67.24%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TrEMBL
Match: M5Y3J1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002461mg PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 2.3e-91 Identity = 166/319 (52.04%), Postives = 206/319 (64.58%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TrEMBL
Match: A0A151TSH1_CAJCA (Histone-lysine N-methyltransferase MLL2 (Fragment) OS=Cajanus cajan GN=KK1_009216 PE=4 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 9.2e-88 Identity = 163/293 (55.63%), Postives = 191/293 (65.19%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TAIR10
Match: AT1G77250.1 (AT1G77250.1 RING/FYVE/PHD-type zinc finger family protein) HSP 1 Score: 266.2 bits (679), Expect = 3.1e-71 Identity = 124/274 (45.26%), Postives = 166/274 (60.58%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TAIR10
Match: AT3G01460.1 (AT3G01460.1 methyl-CPG-binding domain 9) HSP 1 Score: 71.2 bits (173), Expect = 1.5e-12 Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 1
HSP 2 Score: 52.8 bits (125), Expect = 5.4e-07 Identity = 18/46 (39.13%), Postives = 28/46 (60.87%), Query Frame = 1
HSP 3 Score: 48.5 bits (114), Expect = 1.0e-05 Identity = 33/111 (29.73%), Postives = 54/111 (48.65%), Query Frame = 1
HSP 4 Score: 44.3 bits (103), Expect = 1.9e-04 Identity = 21/54 (38.89%), Postives = 31/54 (57.41%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TAIR10
Match: AT5G24330.1 (AT5G24330.1 ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6) HSP 1 Score: 65.1 bits (157), Expect = 1.1e-10 Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 1
HSP 2 Score: 46.6 bits (109), Expect = 3.9e-05 Identity = 14/45 (31.11%), Postives = 26/45 (57.78%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TAIR10
Match: AT5G09790.2 (AT5G09790.2 ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5) HSP 1 Score: 57.8 bits (138), Expect = 1.7e-08 Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. TAIR10
Match: AT5G44800.1 (AT5G44800.1 chromatin remodeling 4) HSP 1 Score: 55.5 bits (132), Expect = 8.4e-08 Identity = 30/100 (30.00%), Postives = 47/100 (47.00%), Query Frame = 1
HSP 2 Score: 51.2 bits (121), Expect = 1.6e-06 Identity = 25/68 (36.76%), Postives = 33/68 (48.53%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. NCBI nr
Match: gi|449444070|ref|XP_004139798.1| (PREDICTED: uncharacterized protein LOC101205573 isoform X2 [Cucumis sativus]) HSP 1 Score: 654.8 bits (1688), Expect = 8.8e-185 Identity = 296/298 (99.33%), Postives = 297/298 (99.66%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. NCBI nr
Match: gi|778725723|ref|XP_011658990.1| (PREDICTED: uncharacterized protein LOC101205573 isoform X1 [Cucumis sativus]) HSP 1 Score: 654.8 bits (1688), Expect = 8.8e-185 Identity = 296/298 (99.33%), Postives = 297/298 (99.66%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. NCBI nr
Match: gi|778725749|ref|XP_011658996.1| (PREDICTED: uncharacterized protein LOC101205573 isoform X3 [Cucumis sativus]) HSP 1 Score: 654.8 bits (1688), Expect = 8.8e-185 Identity = 296/298 (99.33%), Postives = 297/298 (99.66%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. NCBI nr
Match: gi|700188955|gb|KGN44188.1| (hypothetical protein Csa_7G219240 [Cucumis sativus]) HSP 1 Score: 652.5 bits (1682), Expect = 4.4e-184 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 1
BLAST of Cucsa.151260.1 vs. NCBI nr
Match: gi|659093979|ref|XP_008447816.1| (PREDICTED: uncharacterized protein LOC103490198 isoform X3 [Cucumis melo]) HSP 1 Score: 630.2 bits (1624), Expect = 2.3e-177 Identity = 284/298 (95.30%), Postives = 289/298 (96.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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