Cucsa.151250.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.GAAGTAGCAGTTGCAGTGAAGGATTATAGACCCAGAGTTCATCAGCTTAATTACCTTGTCTTCAAGGTAATTGCCAAGGGTTTAACAGAGAAATTCAAGAAGGTAATGCCATCCATTATCACTGACTCAGAGTTCATTCTTAGAAGGGAAGACAAATTTTGGATCCAATCCTTATTGCTAAAGAGGTGGTGAAGGAGTATAAGGCTAAAAAGAAGAAAGGGTGGATGCTTAAACTAGACCTTGAGAAAGCATTCAATTTTAGTTGATTGGGACTTCTTAGAAAAAACCTTGTGAAGCAAACAGTGTGAGCATAAATGGATTGGGCAGATAATGGGTTGTGTGAAGAACCCAAGATATTCCATCTTCATCAATGGAAGGCCGAGAGGGAGAGTTTTGGCTTCTGTGGGTATTCAGCAAGGAGATCCCTTATCCCCATTTCTTTTCCTCCCTGTGAGTGAAGTTTTGGGAGCACTAGTAGATAGACTTCATCAGAATGGGCTCTAAGAAGGATTTGTTGTTGGTAAAGAAAAAATTCATGTTTCCATTCATCAGTTCAAAGATGACACACTTTTATTTTGTACGTATGACAGCCCCATGCTCACAAAGTTAAAGGAAGTTGTAGAATTTAACGAATGGTGCTCAGGTCAGAGAATTTTACAAATGGTGTCAGAAGGTTAATTGGGATAAATCAGTATTATGTGACATTAATTTGGAAGATGTAGTTACCACGGCTGTAAGCTTGAAATGTAAGGTTGAACACCTGCCTTTTATTTACTTGGGCTTACCATTGGGAAGTTATCCAAAAAAACTTCTTTTTGGCAACCGTCGACAAGGTCCATGCTAAACTTGACAAATGGAAAAGATTCAAACTTTTCAGAGGATGACAAGCCACATTATGTAAGTCAGTATTATACAGTGTTCCTACTTATTTTATATCATCCTTCTTAATGCCCAAAGGAGTCACATGAACTAGAAAGAATTCTAAGAATTTTTTCTGGGAAGGTCATAATGGTAGTAAGATCAACCACCTTGTTAAGTGGGAAATAGTTAATAAATCTATTATTGAGGGTGGACTTGGGCTTGGAGGTTTCAAAGCAAAGAACCCAACTCTTCTTGCCAAATGGGGGTGGCGGTATTTCGAGGAAGAGCATTCTTTGTGGCATAAGGTGGTCAGGAGTATCTATGGTAAGGATATGTTTAATTGGCACACAAATGGAAAAGATGGAAAGAGTTCAGAAGTCCTTGGGTTAGCATCTCCCGAGCTTGGCTGAAAGTGGAAGCCTTAGCTAAATTCAAATTGGGAAACGGAAGACGGGTTGCATTTTGGATAAACACTTGGAAGGATGAGATTCCATTTAATATTAAGTTTCCTAGACTCAACATTGCCCTACTTCCAAAAGGATCAATAGCAAAGCATTGA gaagtagcagttgcagtgaaggattatagacccagagttcatcagcttaattaccttgtcttcaaggtaattgccaagggtttaacagagaaattcaagaaggtaatgccatccattatcactgactcagagttcattcttagaagggaagacaaattttggatccaatccttattgctaaagaggtgcaaacagtgtgagcataaatggattgggcagataatgggttgtgtgaagaacccaagatattccatcttcatcaatggaaggccgagagggagagttttggcttctgtgggtattcagcaaggagatcccttatccccatttcttttcctccctgtgagtgaagttttgggagcactaaattctaagaattttttctgggaaggtcataatggtagtaagatcaaccaccttgttaagtgggaaatagttaataaatctattattgagggtggacttgggcttggaggtttcaaagcaaagaacccaactcttcttgccaaatgggggtggcggtatttcgaggaagagcattctttgtggcataaggtggtcaggagtatctatgccttagctaaattcaaattgggaaacggaagacgggttgcattttggataaacacttggaaggatgagattccatttaatattaagtttcctagactcaacattgccctacttccaaaaggatcaatagcaaagcattga GAAGTAGCAGTTGCAGTGAAGGATTATAGACCCAGAGTTCATCAGCTTAATTACCTTGTCTTCAAGGTAATTGCCAAGGGTTTAACAGAGAAATTCAAGAAGGTAATGCCATCCATTATCACTGACTCAGAGTTCATTCTTAGAAGGGAAGACAAATTTTGGATCCAATCCTTATTGCTAAAGAGGTGCAAACAGTGTGAGCATAAATGGATTGGGCAGATAATGGGTTGTGTGAAGAACCCAAGATATTCCATCTTCATCAATGGAAGGCCGAGAGGGAGAGTTTTGGCTTCTGTGGGTATTCAGCAAGGAGATCCCTTATCCCCATTTCTTTTCCTCCCTGTGAGTGAAGTTTTGGGAGCACTAAATTCTAAGAATTTTTTCTGGGAAGGTCATAATGGTAGTAAGATCAACCACCTTGTTAAGTGGGAAATAGTTAATAAATCTATTATTGAGGGTGGACTTGGGCTTGGAGGTTTCAAAGCAAAGAACCCAACTCTTCTTGCCAAATGGGGGTGGCGGTATTTCGAGGAAGAGCATTCTTTGTGGCATAAGGTGGTCAGGAGTATCTATGCCTTAGCTAAATTCAAATTGGGAAACGGAAGACGGGTTGCATTTTGGATAAACACTTGGAAGGATGAGATTCCATTTAATATTAAGTTTCCTAGACTCAACATTGCCCTACTTCCAAAAGGATCAATAGCAAAGCATTGA EVAVAVKDYRPRVHQLNYLVFKVIAKGLTEKFKKVMPSIITDSEFILRREDKFWIQSLLLKRCKQCEHKWIGQIMGCVKNPRYSIFINGRPRGRVLASVGIQQGDPLSPFLFLPVSEVLGALNSKNFFWEGHNGSKINHLVKWEIVNKSIIEGGLGLGGFKAKNPTLLAKWGWRYFEEEHSLWHKVVRSIYALAKFKLGNGRRVAFWINTWKDEIPFNIKFPRLNIALLPKGSIAKH*
BLAST of Cucsa.151250.1 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.0e-08 Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. TrEMBL
Match: A5BB51_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005401 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19 Identity = 55/128 (42.97%), Postives = 75/128 (58.59%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. TrEMBL
Match: A5CA68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044119 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18 Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. TrEMBL
Match: A5C942_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012063 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18 Identity = 61/209 (29.19%), Postives = 89/209 (42.58%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. TrEMBL
Match: M5W794_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016462mg PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18 Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. TrEMBL
Match: M5W794_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016462mg PE=4 SV=1) HSP 1 Score: 39.7 bits (91), Expect = 6.0e+00 Identity = 42/156 (26.92%), Postives = 74/156 (47.44%), Query Frame = 1
HSP 2 Score: 98.2 bits (243), Expect = 1.4e-17 Identity = 55/185 (29.73%), Postives = 84/185 (45.41%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]) HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20 Identity = 63/148 (42.57%), Postives = 75/148 (50.68%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]) HSP 1 Score: 67.8 bits (164), Expect = 3.0e-08 Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1
HSP 2 Score: 109.0 bits (271), Expect = 1.2e-20 Identity = 63/148 (42.57%), Postives = 75/148 (50.68%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica]) HSP 1 Score: 67.8 bits (164), Expect = 3.0e-08 Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1
HSP 2 Score: 108.2 bits (269), Expect = 2.0e-20 Identity = 63/148 (42.57%), Postives = 74/148 (50.00%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. NCBI nr
Match: gi|147781741|emb|CAN69951.1| (hypothetical protein VITISV_005401 [Vitis vinifera]) HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19 Identity = 55/128 (42.97%), Postives = 75/128 (58.59%), Query Frame = 1
BLAST of Cucsa.151250.1 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]) HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19 Identity = 62/148 (41.89%), Postives = 73/148 (49.32%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
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