Cucsa.148700.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.148700.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cell differentiation, Rcd1-like protein
Location	scaffold01107 : 733483 .. 735745 (+)
Sequence length	785

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATAATTTGGCTGTTCTGATATGGCATTCCTTTGGTACTATGTTTACCCTTCTAAAGGTATGAACTCTCAACTGTGGCAATGCCTTTATAGAACAATGTCAATCTTCAAGATGTGTGATTTCTTTTATTTGTGTGTTGCAATTGAAGGAAATTATGGACGTTTACCATATGCTGTCCAAGCCTGACCTTACAGAAAAAGCTTCAACTAGGGTCTGCAATGCTCTTGCTCTTCTTCAGGTTATCATCTCACTTCTGTTATCAGATGTGAAGTTGAATGAAGATAGATTGTTTTGTTTGTTGATCATTTTGACTTGTATGAAATTGTGTTTGTCAATTCCTCCTCGGATACATGTCATTTAGAACATGCACCTTATCTCCATGGTTGAACACACAAATCCATCTTCCGCTTGCTTAAGAAACTGTGTACTTATCTTCTGCAGTGTGTAGCCTCTCACCCAGAAACAAGGGTGCCATTTATGAAAGGTAAAGTCTCAGCAAAATTCGATATATATCTCTCTGTTGTTTTTTTtCTTTTtACATGTTAAAGGCGTTTGGTATTGATGTTTAGGCATTAACCAGTGACCTTTTGAATTAGGTAGCATTGATGGTCTGACTTTTGCTGATCTTTCATGTCTTCTGATTGAATGCATATCATTTTGCAGCTAAAATTCCACTCTATTTGTACCCTTTCCTTAATACCACCATCAAGGAAAAACCTCATGAATATCTCAGACTCACTAGCTTAGGAGTAATTGGTGCACTAGTGAAGGTAGTCACTTGTTTCTTTTCTTTACATTTTGTTTTCTGTTCTGAGGTTAACATCAACTCTTGCTAGTATCATGATGAAATGATTACTTTGGAACAAACTAATGAGTTTAAAGACAAGGACGAACTTTAATGAGTTTAAAGACAGCAACGAGCTCTAATGAGTTTAAAGACAAACGAGCTGTGTACCAAAGAGAAAAAaGAAACTTTCAGTTCAAAAATCAAAATCAAATTCTGTGTAACTACATGAGTTATTTTGTACCTATGCAATTGCTTACCTCACTCTTGCAGGTTGATGACAAGGAAGTTATTTACTTCCTACTCAAAACGGAAATAGTTCCATACTGTCTGCGATGCATGGATGTGGGAAAAGGCTTGTCAAAAACGGTGAGTTCCGCAAGATGAGATCGTAAACCAAGCACAGATATTGTTTTCTCAATGATGTCACACATCTTTATTCATTTATTATCAAGGCTGTCACTCATTATCCTAAGATCATCCAGGTTGCCACGTTTATTGTTCAGAAAATTCTAATGAATGAAGAGGGATTGAGGTACTGTTGTATCATAGCTGATCGCTTTTTtGCAATAACTCATGCCTTGGAAACAATGATGGAAAGACTTTCGGAAGAACCCTCACAACGGCTGCTTAAACATATTTTTCGCTGTTATCTTATGCTCTCTGAAAGTCCAAGGTTAGCTAAAAGTTCCTCTGAAGGCTTTAAAAACTTCATTATTTGATTGGTTTTACCACTACCCTTTATACCACATCATTGATTTTGTGCTTGATTTTATCAATAAAGGGCTTGCCTGGGACTTGGGAGACTCCTTCCTCGGATGCTAAACGACAGCGCCTTTACTGACCTCCTTCATGTAAGTTTTACAATGACAATGAAGTTGTATTGCTATTGCTATTTGTCACCACTAGTTCCCTTGATAATTTCTCAGAAAACAGAACATGTATTGTTGCATATCAATCTGACTGCCTCTTATATGTCACTGGTTGTATAACTATCTATTCATTCCCCATCCTTCAAGTTGATAAGAGCCCTTTATAAAACTTGTTCAATTGGTTCTTTTTGTTCAAGTTCACCTAGTATATTGCAATGAGGGGTTCGGCTGAAATAGTTCAATTCCTCCCATTTTAATAGTAATTCCTCCCATTTTAATAGTATTCACAATTGAAGTCTGCACATTTATTGATAAACTTCATCTCTCCTCTTTACCTCTTTTACACATTTATTGAGGAACTTAATTTTCACAACTCAACGCCTCAAACACAAACAACTTTCTGGTTTCAACTCAATTTGCCCATATGCTCTTAAGCCTGAAGCTTATGCAATTTTTACTGTCTTGTCTTACCCGCAGGATGATCCGACTGTCATGAGCTCTTTCAAGCAGTTGCTTCGCAAGGTACATCGGGACGATGGAAACAAACAAGGGAATCCAAAAACAGGCTGAAGTTATGTGCAAACTTTGCCAATTCTACTGCA

mRNA sequence

ATGTTTGATAATTTGGCTGTTCTGATATGGCATTCCTTTGGTACTATGTTTACCCTTCTAAAGGAAATTATGGACGTTTACCATATGCTGTCCAAGCCTGACCTTACAGAAAAAGCTTCAACTAGGGTCTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCCTCTCACCCAGAAACAAGGGTGCCATTTATGAAAGCTAAAATTCCACTCTATTTGTACCCTTTCCTTAATACCACCATCAAGGAAAAACCTCATGAATATCTCAGACTCACTAGCTTAGGAGTAATTGGTGCACTAGTGAAGGTTGATGACAAGGAAGTTATTTACTTCCTACTCAAAACGGAAATAGTTCCATACTGTCTGCGATGCATGGATGTGGGAAAAGGCTTGTCAAAAACGGTTGCCACGTTTATTGTTCAGAAAATTCTAATGAATGAAGAGGGATTGAGGTACTGTTGTATCATAGCTGATCGCTTTTTTGCAATAACTCATGCCTTGGAAACAATGATGGAAAGACTTTCGGAAGAACCCTCACAACGGCTGCTTAAACATATTTTTCGCTGTTATCTTATGCTCTCTGAAAGTCCAAGGGCTTGCCTGGGACTTGGGAGACTCCTTCCTCGGATGCTAAACGACAGCGCCTTTACTGACCTCCTTCATGATGATCCGACTGTCATGAGCTCTTTCAAGCAGTTGCTTCGCAAGGTACATCGGGACGATGGAAACAAACAAGGGAATCCAAAAACAGGCTGAAGTTATGTGCAAACTTTGCCAATTCTACTGCA

Coding sequence (CDS)

ATGTTTGATAATTTGGCTGTTCTGATATGGCATTCCTTTGGTACTATGTTTACCCTTCTAAAGGAAATTATGGACGTTTACCATATGCTGTCCAAGCCTGACCTTACAGAAAAAGCTTCAACTAGGGTCTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCCTCTCACCCAGAAACAAGGGTGCCATTTATGAAAGCTAAAATTCCACTCTATTTGTACCCTTTCCTTAATACCACCATCAAGGAAAAACCTCATGAATATCTCAGACTCACTAGCTTAGGAGTAATTGGTGCACTAGTGAAGGTTGATGACAAGGAAGTTATTTACTTCCTACTCAAAACGGAAATAGTTCCATACTGTCTGCGATGCATGGATGTGGGAAAAGGCTTGTCAAAAACGGTTGCCACGTTTATTGTTCAGAAAATTCTAATGAATGAAGAGGGATTGAGGTACTGTTGTATCATAGCTGATCGCTTTTTtGCAATAACTCATGCCTTGGAAACAATGATGGAAAGACTTTCGGAAGAACCCTCACAACGGCTGCTTAAACATATTTTTCGCTGTTATCTTATGCTCTCTGAAAGTCCAAGGGCTTGCCTGGGACTTGGGAGACTCCTTCCTCGGATGCTAAACGACAGCGCCTTTACTGACCTCCTTCATGATGATCCGACTGTCATGAGCTCTTTCAAGCAGTTGCTTCGCAAGGTACATCGGGACGATGGAAACAAACAAGGGAATCCAAAAACAGGCTGA

Protein sequence

MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYCLRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDDGNKQGNPKTG*

Homology

[Close]

BLAST of Cucsa.148700.1 vs. Swiss-Prot
Match: RCD1_BOVIN (Cell differentiation protein RCD1 homolog OS=Bos taurus GN=RQCD1 PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.4e-69
Identity = 133/233 (57.08%), Postives = 169/233 (72.53%), Query Frame = 1


Query: 4   NLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETRVPF 63
           +LA ++WHSFGT+  LL+EI+++Y  ++ P LT   S RVCNALALLQCVASHPETR  F
Sbjct: 51  DLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 110

Query: 64  MKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYCLRC 123
           + A IPL+LYPFL+T  K +P EYLRLTSLGVIGALVK D++EVI FLL TEI+P CLR 
Sbjct: 111 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 170

Query: 124 MDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLK 183
           M+ G  LSKTVATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLK
Sbjct: 171 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLK 230

Query: 184 HIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKV 237
           H+ RCYL LS++PRA   L + LP  L D+ F  +L DD T      QL++ +
Sbjct: 231 HVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 283

[Close]

BLAST of Cucsa.148700.1 vs. Swiss-Prot
Match: RCD1_HUMAN (Cell differentiation protein RCD1 homolog OS=Homo sapiens GN=RQCD1 PE=1 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.4e-69
Identity = 133/233 (57.08%), Postives = 169/233 (72.53%), Query Frame = 1


Query: 4   NLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETRVPF 63
           +LA ++WHSFGT+  LL+EI+++Y  ++ P LT   S RVCNALALLQCVASHPETR  F
Sbjct: 51  DLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 110

Query: 64  MKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYCLRC 123
           + A IPL+LYPFL+T  K +P EYLRLTSLGVIGALVK D++EVI FLL TEI+P CLR 
Sbjct: 111 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 170

Query: 124 MDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLK 183
           M+ G  LSKTVATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLK
Sbjct: 171 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLK 230

Query: 184 HIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKV 237
           H+ RCYL LS++PRA   L + LP  L D+ F  +L DD T      QL++ +
Sbjct: 231 HVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 283

[Close]

BLAST of Cucsa.148700.1 vs. Swiss-Prot
Match: RCD1_MACFA (Cell differentiation protein RCD1 homolog OS=Macaca fascicularis GN=RQCD1 PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.4e-69
Identity = 133/233 (57.08%), Postives = 169/233 (72.53%), Query Frame = 1


Query: 4   NLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETRVPF 63
           +LA ++WHSFGT+  LL+EI+++Y  ++ P LT   S RVCNALALLQCVASHPETR  F
Sbjct: 51  DLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 110

Query: 64  MKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYCLRC 123
           + A IPL+LYPFL+T  K +P EYLRLTSLGVIGALVK D++EVI FLL TEI+P CLR 
Sbjct: 111 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 170

Query: 124 MDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLK 183
           M+ G  LSKTVATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLK
Sbjct: 171 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLK 230

Query: 184 HIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKV 237
           H+ RCYL LS++PRA   L + LP  L D+ F  +L DD T      QL++ +
Sbjct: 231 HVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 283

[Close]

BLAST of Cucsa.148700.1 vs. Swiss-Prot
Match: RCD1_MOUSE (Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1 PE=1 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.4e-69
Identity = 133/233 (57.08%), Postives = 169/233 (72.53%), Query Frame = 1


Query: 4   NLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETRVPF 63
           +LA ++WHSFGT+  LL+EI+++Y  ++ P LT   S RVCNALALLQCVASHPETR  F
Sbjct: 51  DLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 110

Query: 64  MKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYCLRC 123
           + A IPL+LYPFL+T  K +P EYLRLTSLGVIGALVK D++EVI FLL TEI+P CLR 
Sbjct: 111 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 170

Query: 124 MDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLK 183
           M+ G  LSKTVATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLK
Sbjct: 171 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLK 230

Query: 184 HIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKV 237
           H+ RCYL LS++PRA   L + LP  L D+ F  +L DD T      QL++ +
Sbjct: 231 HVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 283

[Close]

BLAST of Cucsa.148700.1 vs. Swiss-Prot
Match: RCD1_PONAB (Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1 PE=2 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 5.4e-69
Identity = 133/233 (57.08%), Postives = 169/233 (72.53%), Query Frame = 1


Query: 4   NLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETRVPF 63
           +LA ++WHSFGT+  LL+EI+++Y  ++ P LT   S RVCNALALLQCVASHPETR  F
Sbjct: 51  DLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 110

Query: 64  MKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYCLRC 123
           + A IPL+LYPFL+T  K +P EYLRLTSLGVIGALVK D++EVI FLL TEI+P CLR 
Sbjct: 111 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 170

Query: 124 MDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQRLLK 183
           M+ G  LSKTVATFI+QKIL+++ GL Y C   +RF  +   L  M+ +LS+EPS RLLK
Sbjct: 171 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLK 230

Query: 184 HIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKV 237
           H+ RCYL LS++PRA   L + LP  L D+ F  +L DD T      QL++ +
Sbjct: 231 HVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 283

[Close]

BLAST of Cucsa.148700.1 vs. TrEMBL
Match: A0A0A0K3J1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041980 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 7.0e-140
Identity = 249/250 (99.60%), Postives = 249/250 (99.60%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEK STRVCNALALLQCVASHPETR
Sbjct: 56  MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKDSTRVCNALALLQCVASHPETR 115

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC
Sbjct: 116 VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 175

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR
Sbjct: 176 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 235

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 240
           LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD
Sbjct: 236 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 295

Query: 241 GNKQGNPKTG 251
           GNKQGNPKTG
Sbjct: 296 GNKQGNPKTG 305

[Close]

BLAST of Cucsa.148700.1 vs. TrEMBL
Match: J3M1C6_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 4.0e-79
Identity = 155/250 (62.00%), Postives = 185/250 (74.00%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           +F +LA L+WHSFGT+  LL+EI+ +Y  LS P L+  AS R+CNALALLQCVASHPETR
Sbjct: 74  IFQDLAPLLWHSFGTVGALLQEIVSIYPALSPPTLSPVASNRICNALALLQCVASHPETR 133

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           + F+ A IPLYLYPFLNTT K +P EYLRLTSLGVIGALVKVDD EVI FLL+TEI+P C
Sbjct: 134 ILFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLQTEIIPLC 193

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LR M++G  LSKTVATFIVQKIL+++ GLRY C  A+RFFA+   L  M+  L+E+PS R
Sbjct: 194 LRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANMVVSLAEQPSTR 253

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 240
           LLKHI RCYL LS++PRAC  L   LP ML D  F + L DDPT     +QLL  V    
Sbjct: 254 LLKHIIRCYLRLSDNPRACAALQSCLPDMLKDGTFNNCLRDDPTTRRWLQQLLLNV--TG 313

Query: 241 GNKQGNPKTG 251
           G+  G P+ G
Sbjct: 314 GSMGGAPQPG 321

[Close]

BLAST of Cucsa.148700.1 vs. TrEMBL
Match: C5YFQ1_SORBI (Putative uncharacterized protein Sb06g028320 OS=Sorghum bicolor GN=Sb06g028320 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 8.9e-79
Identity = 154/250 (61.60%), Postives = 183/250 (73.20%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           +F +LA L+WHSFGT+  LL+EI+ +Y  LS P L+  AS RVCNALALLQCVASHPETR
Sbjct: 66  IFQDLAPLLWHSFGTIAALLQEIISIYPSLSPPTLSPGASNRVCNALALLQCVASHPETR 125

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           + F+ A IPLYLYPFLNTT K +P EYLRLTSLGVIGALVKVDD EVI FLL+TEI+P C
Sbjct: 126 ILFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLQTEIIPLC 185

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LR M++G  LSKTVATFIVQKIL+++ GLRY C  A+RFFA+   L  M+  L+++PS R
Sbjct: 186 LRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANMVVSLADQPSTR 245

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 240
           LLKHI RCYL LS++PRAC  L   LP ML D  F + L DDP      +QLL  V    
Sbjct: 246 LLKHIIRCYLRLSDNPRACAALQSCLPDMLKDGTFNNCLRDDPATRRWLQQLLHNV--TG 305

Query: 241 GNKQGNPKTG 251
           G   G P+ G
Sbjct: 306 GGMGGGPQPG 313

[Close]

BLAST of Cucsa.148700.1 vs. TrEMBL
Match: B4FEN5_MAIZE (Rcd1-like transcription factor OS=Zea mays GN=LOC100193338 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 154/250 (61.60%), Postives = 183/250 (73.20%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           +F +LA L+WHSFGT+  LL+EI+ +Y  LS P L+  AS RVCNALALLQCVASHPETR
Sbjct: 66  IFQDLAPLLWHSFGTIAALLQEIISIYPSLSPPTLSPGASNRVCNALALLQCVASHPETR 125

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           + F+ A IPLYLYPFLNTT K +P EYLRLTSLGVIGALVKVDD EVI FLL+TEI+P C
Sbjct: 126 ILFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLQTEIIPLC 185

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LR M++G  LSKTVATFIVQKIL+++ GLRY C  A+RFFA+   L  M+  L+++PS R
Sbjct: 186 LRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANMVVSLADQPSTR 245

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 240
           LLKHI RCYL LS++PRAC  L   LP ML D  F + L DDP      +QLL  V    
Sbjct: 246 LLKHIIRCYLRLSDNPRACAALQSCLPDMLKDGTFNNCLRDDPATRRWLQQLLHNV--TG 305

Query: 241 GNKQGNPKTG 251
           G   G P+ G
Sbjct: 306 GGMGGAPQPG 313

[Close]

BLAST of Cucsa.148700.1 vs. TrEMBL
Match: C4IYT3_MAIZE (Uncharacterized protein OS=Zea mays GN=LOC100193338 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 154/250 (61.60%), Postives = 183/250 (73.20%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           +F +LA L+WHSFGT+  LL+EI+ +Y  LS P L+  AS RVCNALALLQCVASHPETR
Sbjct: 48  IFQDLAPLLWHSFGTIAALLQEIISIYPSLSPPTLSPGASNRVCNALALLQCVASHPETR 107

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           + F+ A IPLYLYPFLNTT K +P EYLRLTSLGVIGALVKVDD EVI FLL+TEI+P C
Sbjct: 108 ILFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLQTEIIPLC 167

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LR M++G  LSKTVATFIVQKIL+++ GLRY C  A+RFFA+   L  M+  L+++PS R
Sbjct: 168 LRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANMVVSLADQPSTR 227

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 240
           LLKHI RCYL LS++PRAC  L   LP ML D  F + L DDP      +QLL  V    
Sbjct: 228 LLKHIIRCYLRLSDNPRACAALQSCLPDMLKDGTFNNCLRDDPATRRWLQQLLHNV--TG 287

Query: 241 GNKQGNPKTG 251
           G   G P+ G
Sbjct: 288 GGMGGAPQPG 295

[Close]

BLAST of Cucsa.148700.1 vs. TAIR10
Match: AT3G20800.1 (AT3G20800.1 Cell differentiation, Rcd1-like protein)

HSP 1 Score: 289.7 bits (740), Expect = 1.8e-78
Identity = 143/236 (60.59%), Postives = 179/236 (75.85%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           +F +LA L+W+SFGT+  LL+EI+ +Y +L+ P+LT   S RVCN+LALLQCVASH +TR
Sbjct: 64  LFQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLTPAQSNRVCNSLALLQCVASHSDTR 123

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           + F+KA IPLYLYPFLNTT K +P EYLRLTSLGVIGALVKVDD EVI FLL TEI+P C
Sbjct: 124 MLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLC 183

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LR M++G  LSKTVATFIVQKIL+++ G+ Y C  A+RFFA+   L  M++ L E+PS R
Sbjct: 184 LRTMEMGSELSKTVATFIVQKILLDDVGMDYICTTAERFFAVGRVLGNMVQSLVEQPSPR 243

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKV 237
           LLKHI RCYL LS++PRAC  L   LP  L D +F++ L +DPT     +QL+  V
Sbjct: 244 LLKHIIRCYLRLSDNPRACAALASCLPDSLRDGSFSNCLREDPTARRWLQQLVHNV 299

[Close]

BLAST of Cucsa.148700.1 vs. TAIR10
Match: AT5G12980.1 (AT5G12980.1 Cell differentiation, Rcd1-like protein)

HSP 1 Score: 285.8 bits (730), Expect = 2.6e-77
Identity = 147/245 (60.00%), Postives = 179/245 (73.06%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           +F +LA L+WHS GT+  LL+EI+ VY  LS P +T   S RVCNALALLQCVASH +TR
Sbjct: 60  IFQDLAPLLWHSVGTIPALLQEIIAVYPALSPPTMTPAQSNRVCNALALLQCVASHTDTR 119

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           + F+KA +PLYLY FLNT+ K +P EYLRLTSLGVIGALVKVDD EVI FLL+TEIVP C
Sbjct: 120 MLFLKAHLPLYLYAFLNTSSKSRPFEYLRLTSLGVIGALVKVDDTEVIRFLLQTEIVPLC 179

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LR M+ G  LSKTVATFIVQK+L+++ GL Y C  A+RFFA+   L  M+  L+E PS R
Sbjct: 180 LRTMENGSELSKTVATFIVQKVLLDDVGLEYMCTTAERFFALGRVLGNMVTSLAEGPSAR 239

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 240
           LLKHI RCYL L+++PRAC  LG  LP +L D+ F+  L+DDP  M   +QLL  V+   
Sbjct: 240 LLKHIIRCYLRLTDNPRACDALGSCLPDLLRDATFSGCLYDDPPAMQWLQQLLHNVNVGG 299

Query: 241 GNKQG 246
              QG
Sbjct: 300 RAPQG 304

[Close]

BLAST of Cucsa.148700.1 vs. TAIR10
Match: AT2G32550.1 (AT2G32550.1 Cell differentiation, Rcd1-like protein)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-35
Identity = 82/243 (33.74%), Postives = 139/243 (57.20%), Query Frame = 1


Query: 2   FDNLAVLIWHSFGTMFTLLKEIMDVY-HMLSKPDLT----EKASTRVCNALALLQCVASH 61
           F+ L  L+W S  T++ +L+E+ + Y H+     L          RV N   L Q +A H
Sbjct: 78  FEFLPSLLWESKNTVYIMLQEVFEAYRHLAGHISLRLFPHPLNPLRVYNVFLLFQSMACH 137

Query: 62  PETRVPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKV-DDKEVIYFLLKTE 121
           P+T   F++AK+P Y YP ++T + +K  E +RL +LGVI  ++K  +D  V  +L+++ 
Sbjct: 138 PDTSRQFLRAKMPNYFYPLMDTGLIDKSDECMRLAALGVIAHMLKASEDGAVNRYLMESG 197

Query: 122 IVPYCLRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSE 181
           +V +C++ ++ G   +K VA +I+ KI+  ++GL YCC++ADRF+ I   L+ ++  LS 
Sbjct: 198 VVGFCVKPIEFGSTETKKVALYILDKIMSTDQGLYYCCVLADRFYVIDELLKKVLFYLSN 257

Query: 182 --EPSQRLLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLL 237
              P   L   +  CY+ LS++ RA  G+ R  P +L D  F+ L  +DP   ++  QLL
Sbjct: 258 MVRPPSSLFSLVTGCYVKLSQNSRARNGIRRYTPFLLFDGTFSRLYAEDPVAANNRIQLL 317

[Close]

BLAST of Cucsa.148700.1 vs. NCBI nr
Match: gi|449453515|ref|XP_004144502.1| (PREDICTED: cell differentiation protein rcd1 isoform X1 [Cucumis sativus])

HSP 1 Score: 504.6 bits (1298), Expect = 1.0e-139
Identity = 249/250 (99.60%), Postives = 249/250 (99.60%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEK STRVCNALALLQCVASHPETR
Sbjct: 56  MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKDSTRVCNALALLQCVASHPETR 115

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC
Sbjct: 116 VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 175

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR
Sbjct: 176 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 235

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 240
           LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD
Sbjct: 236 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 295

Query: 241 GNKQGNPKTG 251
           GNKQGNPKTG
Sbjct: 296 GNKQGNPKTG 305

[Close]

BLAST of Cucsa.148700.1 vs. NCBI nr
Match: gi|778723746|ref|XP_011658697.1| (PREDICTED: cell differentiation protein rcd1 isoform X2 [Cucumis sativus])

HSP 1 Score: 485.3 bits (1248), Expect = 6.3e-134
Identity = 242/250 (96.80%), Postives = 242/250 (96.80%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEK STRVCNALALLQCVASHPETR
Sbjct: 56  MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKDSTRVCNALALLQCVASHPETR 115

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC
Sbjct: 116 VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 175

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LRCMDVGKGLSKT       KILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR
Sbjct: 176 LRCMDVGKGLSKT-------KILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 235

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 240
           LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD
Sbjct: 236 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRDD 295

Query: 241 GNKQGNPKTG 251
           GNKQGNPKTG
Sbjct: 296 GNKQGNPKTG 298

[Close]

BLAST of Cucsa.148700.1 vs. NCBI nr
Match: gi|659110871|ref|XP_008455454.1| (PREDICTED: cell differentiation protein rcd1 isoform X1 [Cucumis melo])

HSP 1 Score: 456.4 bits (1173), Expect = 3.1e-125
Identity = 227/239 (94.98%), Postives = 233/239 (97.49%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           MFDNLAVLIWHSFGTMFTLLKEIMDVYH+LSKP+LTEKASTRVCNALALLQCVASHPETR
Sbjct: 61  MFDNLAVLIWHSFGTMFTLLKEIMDVYHLLSKPELTEKASTRVCNALALLQCVASHPETR 120

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           VPFMKA+IPLYLYPFLNTTIKEKPHE LRLTSLGVIGALVKV+DKEVIYFLLKTEIVPYC
Sbjct: 121 VPFMKAEIPLYLYPFLNTTIKEKPHECLRLTSLGVIGALVKVNDKEVIYFLLKTEIVPYC 180

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAIT ALETMME LSEEPSQR
Sbjct: 181 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITRALETMMETLSEEPSQR 240

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRD 240
           LLKHI RCYLMLSESPRACLGLGRLLPRML+ SAFTDLLHDDPTVMSSFKQLLRKVH +
Sbjct: 241 LLKHIVRCYLMLSESPRACLGLGRLLPRMLSHSAFTDLLHDDPTVMSSFKQLLRKVHEN 299

[Close]

BLAST of Cucsa.148700.1 vs. NCBI nr
Match: gi|659110875|ref|XP_008455456.1| (PREDICTED: cell differentiation protein RCD1 homolog isoform X3 [Cucumis melo])

HSP 1 Score: 456.4 bits (1173), Expect = 3.1e-125
Identity = 227/239 (94.98%), Postives = 233/239 (97.49%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           MFDNLAVLIWHSFGTMFTLLKEIMDVYH+LSKP+LTEKASTRVCNALALLQCVASHPETR
Sbjct: 37  MFDNLAVLIWHSFGTMFTLLKEIMDVYHLLSKPELTEKASTRVCNALALLQCVASHPETR 96

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           VPFMKA+IPLYLYPFLNTTIKEKPHE LRLTSLGVIGALVKV+DKEVIYFLLKTEIVPYC
Sbjct: 97  VPFMKAEIPLYLYPFLNTTIKEKPHECLRLTSLGVIGALVKVNDKEVIYFLLKTEIVPYC 156

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAIT ALETMME LSEEPSQR
Sbjct: 157 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITRALETMMETLSEEPSQR 216

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRD 240
           LLKHI RCYLMLSESPRACLGLGRLLPRML+ SAFTDLLHDDPTVMSSFKQLLRKVH +
Sbjct: 217 LLKHIVRCYLMLSESPRACLGLGRLLPRMLSHSAFTDLLHDDPTVMSSFKQLLRKVHEN 275

[Close]

BLAST of Cucsa.148700.1 vs. NCBI nr
Match: gi|659110873|ref|XP_008455455.1| (PREDICTED: cell differentiation protein rcd1 isoform X2 [Cucumis melo])

HSP 1 Score: 437.2 bits (1123), Expect = 2.0e-119
Identity = 220/239 (92.05%), Postives = 226/239 (94.56%), Query Frame = 1


Query: 1   MFDNLAVLIWHSFGTMFTLLKEIMDVYHMLSKPDLTEKASTRVCNALALLQCVASHPETR 60
           MFDNLAVLIWHSFGTMFTLLKEIMDVYH+LSKP+LTEKASTRVCNALALLQCVASHPETR
Sbjct: 61  MFDNLAVLIWHSFGTMFTLLKEIMDVYHLLSKPELTEKASTRVCNALALLQCVASHPETR 120

Query: 61  VPFMKAKIPLYLYPFLNTTIKEKPHEYLRLTSLGVIGALVKVDDKEVIYFLLKTEIVPYC 120
           VPFMKA+IPLYLYPFLNTTIKEKPHE LRLTSLGVIGALVKV+DKEVIYFLLKTEIVPYC
Sbjct: 121 VPFMKAEIPLYLYPFLNTTIKEKPHECLRLTSLGVIGALVKVNDKEVIYFLLKTEIVPYC 180

Query: 121 LRCMDVGKGLSKTVATFIVQKILMNEEGLRYCCIIADRFFAITHALETMMERLSEEPSQR 180
           LRCMDVGKGLSKT       KILMNEEGLRYCCIIADRFFAIT ALETMME LSEEPSQR
Sbjct: 181 LRCMDVGKGLSKT-------KILMNEEGLRYCCIIADRFFAITRALETMMETLSEEPSQR 240

Query: 181 LLKHIFRCYLMLSESPRACLGLGRLLPRMLNDSAFTDLLHDDPTVMSSFKQLLRKVHRD 240
           LLKHI RCYLMLSESPRACLGLGRLLPRML+ SAFTDLLHDDPTVMSSFKQLLRKVH +
Sbjct: 241 LLKHIVRCYLMLSESPRACLGLGRLLPRMLSHSAFTDLLHDDPTVMSSFKQLLRKVHEN 292

The following BLAST results are available for this feature:

BLAST of Cucsa.148700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RCD1_BOVIN	5.4e-69	57.08	Cell differentiation protein RCD1 homolog OS=Bos taurus GN=RQCD1 PE=2 SV=1	[more]
RCD1_HUMAN	5.4e-69	57.08	Cell differentiation protein RCD1 homolog OS=Homo sapiens GN=RQCD1 PE=1 SV=1	[more]
RCD1_MACFA	5.4e-69	57.08	Cell differentiation protein RCD1 homolog OS=Macaca fascicularis GN=RQCD1 PE=2 S...	[more]
RCD1_MOUSE	5.4e-69	57.08	Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1 PE=1 SV=1	[more]
RCD1_PONAB	5.4e-69	57.08	Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1 PE=2 SV=2	[more]

BLAST of Cucsa.148700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3J1_CUCSA	7.0e-140	99.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G041980 PE=4 SV=1	[more]
J3M1C6_ORYBR	4.0e-79	62.00	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]
C5YFQ1_SORBI	8.9e-79	61.60	Putative uncharacterized protein Sb06g028320 OS=Sorghum bicolor GN=Sb06g028320 P...	[more]
B4FEN5_MAIZE	1.5e-78	61.60	Rcd1-like transcription factor OS=Zea mays GN=LOC100193338 PE=2 SV=1	[more]
C4IYT3_MAIZE	1.5e-78	61.60	Uncharacterized protein OS=Zea mays GN=LOC100193338 PE=2 SV=1	[more]

BLAST of Cucsa.148700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20800.1	1.8e-78	60.59	Cell differentiation, Rcd1-like protein	[more]
AT5G12980.1	2.6e-77	60.00	Cell differentiation, Rcd1-like protein	[more]
AT2G32550.1	2.4e-35	33.74	Cell differentiation, Rcd1-like protein	[more]

BLAST of Cucsa.148700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453515\|ref\|XP_004144502.1\|	1.0e-139	99.60	PREDICTED: cell differentiation protein rcd1 isoform X1 [Cucumis sativus]	[more]
gi\|778723746\|ref\|XP_011658697.1\|	6.3e-134	96.80	PREDICTED: cell differentiation protein rcd1 isoform X2 [Cucumis sativus]	[more]
gi\|659110871\|ref\|XP_008455454.1\|	3.1e-125	94.98	PREDICTED: cell differentiation protein rcd1 isoform X1 [Cucumis melo]	[more]
gi\|659110875\|ref\|XP_008455456.1\|	3.1e-125	94.98	PREDICTED: cell differentiation protein RCD1 homolog isoform X3 [Cucumis melo]	[more]
gi\|659110873\|ref\|XP_008455455.1\|	2.0e-119	92.05	PREDICTED: cell differentiation protein rcd1 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007216	Rcd1/Caf40
IPR016024	ARM-type_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006402	mRNA catabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0030014	CCR4-NOT complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0005488	binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.148700	Cucsa.148700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.148700.1	Cucsa.148700.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.148700.1.CDS.1	Cucsa.148700.1.CDS.1	CDS
Cucsa.148700.1.CDS.2	Cucsa.148700.1.CDS.2	CDS
Cucsa.148700.1.CDS.3	Cucsa.148700.1.CDS.3	CDS
Cucsa.148700.1.CDS.4	Cucsa.148700.1.CDS.4	CDS
Cucsa.148700.1.CDS.5	Cucsa.148700.1.CDS.5	CDS
Cucsa.148700.1.CDS.6	Cucsa.148700.1.CDS.6	CDS
Cucsa.148700.1.CDS.7	Cucsa.148700.1.CDS.7	CDS
Cucsa.148700.1.CDS.8	Cucsa.148700.1.CDS.8	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.148700.1.three_prime_UTR.1	Cucsa.148700.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007216	Rcd1/Caf40	PANTHER	PTHR12262	UNCHARACTERIZED	coord: 1..247 score: 1.7E
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 43..124 score: 6.58E-7coord: 159..207 score: 6.5
None	No IPR available	PFAM	PF04078	Rcd1	coord: 2..236 score: 8.3E