Cucsa.142530.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGCCAAAAAAAAACCCTGAATTCAGCCATATATATTCCTTATTTTCCAAAATACTAAGAAAAAAAACTATACCCATCATGCGAAAACTTCAACTTTCTCTTAATCTGGCTTGAAATTCTTCAATTTCTTAGTTCTGATCATCTGGGCTTTTATCCAGTGAAGAATCTTGTACACATCAAAATGGCTTCCTGCAGTATCCTTTGCAGTTCGCAGCTCCAATTTCACTCAATTTCTTTTAGAAAGAATTTCGCCTTCAATTCACATGGCTCTCAAGGGTCACTCGCTTTTGCCTCGAGGTTGAAGCAACAAAGGGCCATTACATGTAATTCCACCGCTTCCAAACAACAATTTGAGGTAAAATTTTGGATTATTCTTTGGAATTGTGGACTGGGGTGCTGTAATTGTGGTTTTTTAATTGGTTTAATTTGGGATTTTGAGTTGGAAATTAGATAGTTTATGATCCTGATGAAAGGATAAGTAAGTTAGCTGATGAAGTGGACCGGGATGCTCCTCTTTCGAGGCTTACTCTGTTCTCACCTTGCAAGGTAACAATGGTGTTGCTTCAAGTTAAACTTTGCAGTGTTGGGGGTTTCTTTTTTAATCTCTTTTGTTGATTTATATGTTGAGTTTTAGTGATGCAGATTAATGTTTTCTTGAGAATAACTAAGAAGAGGGAAGATGGATATCATGATTTGGCATCTCTCTTTCATGTAAGTAATGAGATTTTTCTATTTGATGTAGATGCAGACTAAGAAACATGACACTGTAGTTTGGCTCTCGTGTCATTGTTTGATGTGTATTGGACACTTGAGCACTCCCATCACTTGTTAAAAGCGTTAACTGCAAATTGTACAAAGTTAAAATAGGACCAACATTTAACACACATGCATCAAACACTTGTTACATAACTAAGTCGGACACATATATGACAAAAATAATAGAACTTGAGAGCAAAATACATCAAACTAATTTTTCAAGCATATAAATGAATAAACTACTCTGAATTTTCTTCTTGTTTGAAAATGATTTATATTTTAAAAATGTATGTTTTAACATGTTCTTACCGTTGTCGTGTCCTAATTTTTTTTAAAAATTACATGGTGTGTCCATGCGGACTGTGCCTTGTATCCGTATCCGTGTTCCTGAGAGTGCAGTCAAGTTTCAAGTTGGGGTGCGTTTGAGAGGCTTACGCCTGTTATTAGTATATTCTTTTTAAAAATCTCTTTTGATGTTCTCTTTGAACGTCATGAAACTTTTAATTTGCTAAAAGCAACTTTTTACAATTCAAGAAGTCATACCAAACTCACCTTTAGTCTTTTAGAAGGAGTTGAGATGTTAATAACTTTGAGAATTTTGGATGATCTGTTTTCTCCTTTTTTTTTCTGCCCTTAGGTGATAAGCTTAGGGGATACTATTAAATTCTCTTTGTCACCATCGAAGAAGGATCGACTTTCTACCAATGTTTCTGGGGTGCCTCTTGATGATCGAAATTTGGTAGTTGTTTTAGTATAATGCTCTTATTTTATTTCTTCTGATGATTTTCTTTTTTTCCTCAACTTCTTTGTCTTCTATATATCTACAGATTATCAAGGCTCTCAACCTCTACAGGAAAAAGACTGGCAGTGACAATTTTTTCTGGGTGAGAATCAAAGAATGTCATGGAATCTGCCTGTATGAATGGACTCTATCATAAAATTTGGAATTATATTCTTTTATGTACGAGCAGATCCATCTCGACAAAAAGGTACCAACTGGAGCAGGGCTCGGTGGAGGAAGTAGTAACGCTGCAACTGCTCTGTGGGCGGCCAATCAGTTCAGTGGATGTCTTGCTACTGAAAAGGACCTTCAAGAATGGTCGGGCGAGATAGGATCTGACATTCCCTTCTTTTTCTCGGATGGTGCGGCCTTTTGCACCGGGCGAGGTGAGGTATGTTTAAATGACTACAACCATTTGTAAGAATATTTAATTCGATTTGGAAATGGTGATTGTTCTCTCCTTCACATCAATGCACAAAAATTGCAGAAATTTGCATCTTGAGACAGATTTGATAGAAAGAGTGTGTTGGTTTTGATCTATAAATCAATGGACTTAACAAAGATGCTTTTGTTTGTGTCTGTATATATGAGTACACTTATTCGCATGCTCTATGCTCGAAATCCTACTTGTTTGCTCCTATTATTTTGTCTCAGCTTCTTATAGAACTGACATCCTTTAGTTTAGTACTGTCTGTTGAATTTACATAGTGTTTCTGCATGCGTTAGCTTGAATGGCTTTATTGCCTTCGCGAATTCTGGAAACCATTGAGCTCATAACAGTTTATTCCAGATGATTGCTTTGTTCTAGGATTGCATTTGATAAATTTTAACAAGTTCTTTTTTATCAGGTTGTACAGAATCTTCCACCTCCAGTACCCTTGGATGTTCCAATGGTTCTCATAAAACCCCAGGAAGCATGCTCTACAGCTGAAGTTTATAAGGTAATGGAAATTTAGTATAAGTTGAGAGAACAATGAGAATTAGTTCTTATTTTCACTACTTAATCAAGGTCGATTTGTATTCCCCAGCGCTTACGGTTGGATCAAACAAGCAAGGTTGATCCTTCTTCATTGTTGGATAAAATCACAAAGAATGGAATATCCCAAGACGTGTGTATCAACGATTTGGGTACGTGAGTTTGTTTAATATTTACTAAAACAAGTACTTGCAAGCCAGTTTCAGTGCTTCGGGTTGGTGAAATTAGAACATGTCATAAATTACATGGTAAATAATGAACTCTGTGTTAAAGTTTCAACATAATTTCGTACCTGATCACTTTAAGTGGAGTATGAACATTAGTGACTTTCTTTGCGTATCAATTTTAAAATTACTGCTGATTGACTCTATTTTGTATCATCCACGAAATCTTACATGGCTTTTTCTTTTATGTTGCCACACCAAAAAGTACAGAGACAAAGGTACAAAGATACGACATGTCATGGACACGGCGATACGTCGTTTCTTAAAAGTATAGGACACAACACACAAGAACATATTTATTAAATTATGCATTTTTTAAAATATATATAATTTTTATAACAAAAGAAATTTAAAGTAAATGAATTGATGCATTGTTTGATGTAATTCAACTCAGAATTTATTATTACCCCCTATACTTTTTTGTCTATTCAACAAGTGTTTTTAATTTTATGCATGTTTATTGTCTAACACATTTGCTGCACTAACAAGTGTTTTTTGTGTGTTCAACGAGTGTGCGACACACTAGCCAAATAGTGCTTCTTAGTTCTTAGTTCTTAGTTGACACACTTATACTTCTATCTTTGGCGTTCTTTCTCCTCAGAACCTCCTGCTTTTGAGGTCCTCCCATCTCTTAAAAGATTGAAGCAGCGGATCATTTCTGCCAGCCGTGGAGGATTCGATGCAGTATTTATGTCCGGGAGGTAAGAACGTTCAAATGAATTCTATGAACACCCCTTGATCTTTTTTTCATATGTTTGCAAGGTAGATAATGTCACGTGTTTTTCTGTTCTTTTATGGAGCTTTTATTGAAGTATGATTATTAGTATAAACGTCTTACCACCCCGTCCAATCCCGTTTCTTGCAGTGGTAGCACGATAGTAGGGATTGGGTCCCCAGATCCTCCGGGCTTCATATATGATGACGAAGAATTTCGGGACGTATTTTTGGCAGGTAACACCATGAACACTCCGTGACTTATTCTCTATATTTTTTGACCTCATGCAAGACCGTTAATGCATAAAGCCCTTCCCTTGTTACTGGGAGACTGTCTTCACTCCAAATGCAAGTTAGAGAAGCGATATTCGTTGGATATTTTTCTAGTATTGTTGTGTTGTCTGGAAGCAAGCCTGCAAAACTTACATGACCAAAATAACCGAAGAGAAATTTTGGTTTGAATTCGGTCTCGTATTTGGAGAATTTTGCAGCTTAAAATACCTATCAAGTTAAGAATGAAGTTGAGAGGTGATAAATCAATGAACTTAATATTGGGTACATCTTTTCATAAGCTTTGGTTAAACTCCAATTTGACTTAGTTTAACCCTCATCTGTTATACGTTGTATACCATAAAAAGAATTTTTATTATCTCAAAAGTCGTTTCAGATCTGCTCTTAAACCTTCTGACATCGTCCTTTACTCGTTGAAGAAGTCGACCTGGAAAAATGAATAGTATGATTTGTATTGAATGAAGAACATAAACAGAATTCATTGATTTTAGTTAGTGTATTGTCTCTTCCTAAAATCAAATGTTTGGATCTAATCTTATCTGAAAAACTCTGAATGCAGAGGCCAACTTTCTCACTCGTGAACCAAATAAATGGTATCAAGAACCTGCTTCGTCATCCGCTTGTAGTCCGCCGTCCGAGCATCCCGAATCATCATCAGCTCGATAGCTTCTTCTGCCTACGAGAAAATAGAGGTTCACCTTATGTTTGATATTGTAGTGAGAATTTGTGTATCACAGTTAAAACCACATCCCTCCATTGATAAACTTGGAAAGTGAGATCTTGAGTTCTCTTAATGCGACCAACAACCAAATCTTTGGTCTCTAAGGAGAATTAAGAAGAAAAAAGTAAGCAAGATTTGGAATCAGCCCAAGTATTGAAAATGTCAAGAATATAAACAATGATAATAATCTTAGATAATGTCAAAATCGAATTTGAGAGCTAGATATTTCTTTCTTTGTTTCGAGCACGAGGTAAGGTCATTTTTGTAAATAATGTATTCTAAGTCT TGCCAAAAAAAAACCCTGAATTCAGCCATATATATTCCTTATTTTCCAAAATACTAAGAAAAAAAACTATACCCATCATGCGAAAACTTCAACTTTCTCTTAATCTGGCTTGAAATTCTTCAATTTCTTAGTTCTGATCATCTGGGCTTTTATCCAGTGAAGAATCTTGTACACATCAAAATGGCTTCCTGCAGTATCCTTTGCAGTTCGCAGCTCCAATTTCACTCAATTTCTTTTAGAAAGAATTTCGCCTTCAATTCACATGGCTCTCAAGGGTCACTCGCTTTTGCCTCGAGGTTGAAGCAACAAAGGGCCATTACATGTAATTCCACCGCTTCCAAACAACAATTTGAGATAGTTTATGATCCTGATGAAAGGATAAGTAAGTTAGCTGATGAAGTGGACCGGGATGCTCCTCTTTCGAGGCTTACTCTGTTCTCACCTTGCAAGATTAATGTTTTCTTGAGAATAACTAAGAAGAGGGAAGATGGATATCATGATTTGGCATCTCTCTTTCATGTGATAAGCTTAGGGGATACTATTAAATTCTCTTTGTCACCATCGAAGAAGGATCGACTTTCTACCAATGTTTCTGGGGTGCCTCTTGATGATCGAAATTTGATTATCAAGGCTCTCAACCTCTACAGGAAAAAGACTGGCAGTGACAATTTTTTCTGGATCCATCTCGACAAAAAGGTACCAACTGGAGCAGGGCTCGGTGGAGGAAGTAGTAACGCTGCAACTGCTCTGTGGGCGGCCAATCAGTTCAGTGGATGTCTTGCTACTGAAAAGGACCTTCAAGAATGGTCGGGCGAGATAGGATCTGACATTCCCTTCTTTTTCTCGGATGGTGCGGCCTTTTGCACCGGGCGAGGTGAGGTTGTACAGAATCTTCCACCTCCAGTACCCTTGGATGTTCCAATGGTTCTCATAAAACCCCAGGAAGCATGCTCTACAGCTGAAGTTTATAAGCGCTTACGGTTGGATCAAACAAGCAAGGTTGATCCTTCTTCATTGTTGGATAAAATCACAAAGAATGGAATATCCCAAGACGTGTGTATCAACGATTTGGAACCTCCTGCTTTTGAGGTCCTCCCATCTCTTAAAAGATTGAAGCAGCGGATCATTTCTGCCAGCCGTGGAGGATTCGATGCAGTATTTATGTCCGGGAGTGGTAGCACGATAGTAGGGATTGGGTCCCCAGATCCTCCGGGCTTCATATATGATGACGAAGAATTTCGGGACGTATTTTTGGCAGAGGCCAACTTTCTCACTCGTGAACCAAATAAATGGTATCAAGAACCTGCTTCGTCATCCGCTTGTAGTCCGCCGTCCGAGCATCCCGAATCATCATCAGCTCGATAGCTTCTTCTGCCTACGAGAAAATAGAGGTTCACCTTATGTTTGATATTGTAGTGAGAATTTGTGTATCACAGTTAAAACCACATCCCTCCATTGATAAACTTGGAAAGTGAGATCTTGAGTTCTCTTAATGCGACCAACAACCAAATCTTTGGTCTCTAAGGAGAATTAAGAAGAAAAAAGTAAGCAAGATTTGGAATCAGCCCAAGTATTGAAAATGTCAAGAATATAAACAATGATAATAATCTTAGATAATGTCAAAATCGAATTTGAGAGCTAGATATTTCTTTCTTTGTTTCGAGCACGAGGTAAGGTCATTTTTGTAAATAATGTATTCTAAGTCT ATGGCTTCCTGCAGTATCCTTTGCAGTTCGCAGCTCCAATTTCACTCAATTTCTTTTAGAAAGAATTTCGCCTTCAATTCACATGGCTCTCAAGGGTCACTCGCTTTTGCCTCGAGGTTGAAGCAACAAAGGGCCATTACATGTAATTCCACCGCTTCCAAACAACAATTTGAGATAGTTTATGATCCTGATGAAAGGATAAGTAAGTTAGCTGATGAAGTGGACCGGGATGCTCCTCTTTCGAGGCTTACTCTGTTCTCACCTTGCAAGATTAATGTTTTCTTGAGAATAACTAAGAAGAGGGAAGATGGATATCATGATTTGGCATCTCTCTTTCATGTGATAAGCTTAGGGGATACTATTAAATTCTCTTTGTCACCATCGAAGAAGGATCGACTTTCTACCAATGTTTCTGGGGTGCCTCTTGATGATCGAAATTTGATTATCAAGGCTCTCAACCTCTACAGGAAAAAGACTGGCAGTGACAATTTTTTCTGGATCCATCTCGACAAAAAGGTACCAACTGGAGCAGGGCTCGGTGGAGGAAGTAGTAACGCTGCAACTGCTCTGTGGGCGGCCAATCAGTTCAGTGGATGTCTTGCTACTGAAAAGGACCTTCAAGAATGGTCGGGCGAGATAGGATCTGACATTCCCTTCTTTTTCTCGGATGGTGCGGCCTTTTGCACCGGGCGAGGTGAGGTTGTACAGAATCTTCCACCTCCAGTACCCTTGGATGTTCCAATGGTTCTCATAAAACCCCAGGAAGCATGCTCTACAGCTGAAGTTTATAAGCGCTTACGGTTGGATCAAACAAGCAAGGTTGATCCTTCTTCATTGTTGGATAAAATCACAAAGAATGGAATATCCCAAGACGTGTGTATCAACGATTTGGAACCTCCTGCTTTTGAGGTCCTCCCATCTCTTAAAAGATTGAAGCAGCGGATCATTTCTGCCAGCCGTGGAGGATTCGATGCAGTATTTATGTCCGGGAGTGGTAGCACGATAGTAGGGATTGGGTCCCCAGATCCTCCGGGCTTCATATATGATGACGAAGAATTTCGGGACGTATTTTTGGCAGAGGCCAACTTTCTCACTCGTGAACCAAATAAATGGTATCAAGAACCTGCTTCGTCATCCGCTTGTAGTCCGCCGTCCGAGCATCCCGAATCATCATCAGCTCGATAG MASCSILCSSQLQFHSISFRKNFAFNSHGSQGSLAFASRLKQQRAITCNSTASKQQFEIVYDPDERISKLADEVDRDAPLSRLTLFSPCKINVFLRITKKREDGYHDLASLFHVISLGDTIKFSLSPSKKDRLSTNVSGVPLDDRNLIIKALNLYRKKTGSDNFFWIHLDKKVPTGAGLGGGSSNAATALWAANQFSGCLATEKDLQEWSGEIGSDIPFFFSDGAAFCTGRGEVVQNLPPPVPLDVPMVLIKPQEACSTAEVYKRLRLDQTSKVDPSSLLDKITKNGISQDVCINDLEPPAFEVLPSLKRLKQRIISASRGGFDAVFMSGSGSTIVGIGSPDPPGFIYDDEEFRDVFLAEANFLTREPNKWYQEPASSSACSPPSEHPESSSAR*
BLAST of Cucsa.142530.1 vs. Swiss-Prot
Match: ISPE_SOLLC (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment) OS=Solanum lycopersicum GN=ISPE PE=1 SV=1) HSP 1 Score: 563.9 bits (1452), Expect = 1.4e-159 Identity = 273/345 (79.13%), Postives = 312/345 (90.43%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. Swiss-Prot
Match: ISPE_ARATH (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Arabidopsis thaliana GN=ISPE PE=2 SV=1) HSP 1 Score: 557.8 bits (1436), Expect = 9.8e-158 Identity = 269/366 (73.50%), Postives = 323/366 (88.25%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. Swiss-Prot
Match: ISPE_MENPI (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Mentha piperita GN=ISPE PE=1 SV=1) HSP 1 Score: 535.8 bits (1379), Expect = 4.0e-151 Identity = 263/376 (69.95%), Postives = 310/376 (82.45%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. Swiss-Prot
Match: ISPE_ORYSJ (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPE PE=2 SV=1) HSP 1 Score: 532.7 bits (1371), Expect = 3.4e-150 Identity = 260/365 (71.23%), Postives = 311/365 (85.21%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. Swiss-Prot
Match: ISPE_PARUW (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Protochlamydia amoebophila (strain UWE25) GN=ispE PE=3 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 1.0e-58 Identity = 133/292 (45.55%), Postives = 172/292 (58.90%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. TrEMBL
Match: A0A0A0LZC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600780 PE=3 SV=1) HSP 1 Score: 792.3 bits (2045), Expect = 2.6e-226 Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. TrEMBL
Match: I3T103_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 597.0 bits (1538), Expect = 1.6e-167 Identity = 302/393 (76.84%), Postives = 338/393 (86.01%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. TrEMBL
Match: A0A0S3S796_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G222100 PE=3 SV=1) HSP 1 Score: 595.1 bits (1533), Expect = 6.2e-167 Identity = 303/391 (77.49%), Postives = 337/391 (86.19%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. TrEMBL
Match: A0A0L9VJA8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g071100 PE=3 SV=1) HSP 1 Score: 595.1 bits (1533), Expect = 6.2e-167 Identity = 303/391 (77.49%), Postives = 337/391 (86.19%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. TrEMBL
Match: W9QUU2_9ROSA (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Morus notabilis GN=L484_022527 PE=3 SV=1) HSP 1 Score: 592.4 bits (1526), Expect = 4.0e-166 Identity = 300/389 (77.12%), Postives = 336/389 (86.38%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. TAIR10
Match: AT2G26930.1 (AT2G26930.1 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase) HSP 1 Score: 557.8 bits (1436), Expect = 5.5e-159 Identity = 269/366 (73.50%), Postives = 323/366 (88.25%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. NCBI nr
Match: gi|449452678|ref|XP_004144086.1| (PREDICTED: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic [Cucumis sativus]) HSP 1 Score: 792.3 bits (2045), Expect = 3.8e-226 Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. NCBI nr
Match: gi|659100337|ref|XP_008451044.1| (PREDICTED: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 777.3 bits (2006), Expect = 1.3e-221 Identity = 386/394 (97.97%), Postives = 389/394 (98.73%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. NCBI nr
Match: gi|659100339|ref|XP_008451045.1| (PREDICTED: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 653.7 bits (1685), Expect = 2.1e-184 Identity = 336/394 (85.28%), Postives = 343/394 (87.06%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. NCBI nr
Match: gi|1009162788|ref|XP_015899623.1| (PREDICTED: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic isoform X1 [Ziziphus jujuba]) HSP 1 Score: 597.8 bits (1540), Expect = 1.4e-167 Identity = 299/392 (76.28%), Postives = 342/392 (87.24%), Query Frame = 1
BLAST of Cucsa.142530.1 vs. NCBI nr
Match: gi|388516267|gb|AFK46195.1| (unknown [Lotus japonicus]) HSP 1 Score: 597.0 bits (1538), Expect = 2.3e-167 Identity = 302/393 (76.84%), Postives = 338/393 (86.01%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
|