Cucsa.142510.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGTCCTCTCGTTCTCTCTCTCTCTCCGCTCTTGATCCAAATCTTCATTCACTGTTCTTGTTTCTCCTTCTTCCCCAACCCTCCCACTTCCCCTACTTCAGCTTCGGTACGTCTTTCTTCACTTCAATTTTAAATCAGGGTTCCATTTTTCAATTTCTGCTTCTTTCTAATTTTGTTTTGATACCGTATTCATATACTTCTTGTTAATTTTATATCTGTCGTAATTCTGCTTAATTTCCATGTTTTTTCCTAGTCTTTTCTTGTAATTCTTTCGACAAATCTCAATCTGACGAGGGTTTGAACGCCTCGTTTGAGTGATGATTCTGTAACGAGGGAAATCTTCCTCTCGGTTATAGGAGACAACTCAAAAATAAATTCGGATTAGGTTGGGTCTCAATTCAATATATGTATTTTTGGGTTGATCCAATCCGACTCGAATTTCATATGTATTAATAAAACATTATGTATGCATTTCTTTTAGAATGGATGAATTTTTAATGTCTTTTTtAGAAATGTTTTCTTTTGTTTAAGTTTACAATAGATATCATGGATATTTGAGCATTTAAGTTTTATAAGATTTTAGTTTAAATTCATGTATTTTAGATTAATAAGAAAAAAAAAAAAAaaGAaCCCAACAACCCAACCTGAATTTTGAGGGTTGGATTGGAGAGAAGACCCTGTTGGAACTGGGAGTCTTTTGAATTGCCAACTCAACCAACATGAATTTTCGGGTTGGTCCAAAGATTTCCCACAACTCAACCTAAGTACTACCTAAACTGTCTCCTTCGCTTGTGAGAGATAAAGTATGTGGGGATTGTACAGATGATACATCAAGAAGTTTGTCAGAAGAATTGGGGACAGTGATTGTACTCGTATTAATTCCTGGCTATCAAGTTGAAATCATGGGGTTATTAGGCTATTCAAGTTTAGTTGTGTTTATATAAGCCACATGAATGTGTTTGGGATTTTTCATTTTTTATTATTTATATTACATTTTTAGTCTATATGTTTCCATTTTTGTTCATAGTTTTCTTTTATTTATCAAGGCTTACCCAAGAGTCTTACCAATAATCAAATGTCACATATCCAATCTAGTAAGATGTATTTTTCAACCATAATTGTACTTAAAATCTGACCCTGTTAAGACATAAAGTCAATAGAATATTCTTTGCAATTATGTATTTATTTACCTTGATCTGACTTTTGCCAATATGGCATGATTTGGATTATTTTCCGTATGTAATAGTTCTCAATAGTACTATTCTAGTTCATTATAAAAACCATTTTCTTCTCTTGGCAGATGCACAAGCCGAGAGAACGTTATTAAAACCAACCCCTTACTGTAAACCTTTTCTGACCCCAACGGGTGTTCTTCAGTTAATATGATCTACAGTATGCTACAAGGGAGTTGGGTTATCTTTTACTACATTGGGGGATTTTTAGTACCCTCTAATTAAACAAACATTTTTTGAAGTACACAGAATCAAAACGATATATAGGTGAAAATATAGAGAAGAGTACAATGGAATTAAATCTGCTTTTCTCTTGAATTGTGATTGTCCATTATCCAATCGAGGAGTATATTCCTAGATTCCTTTGCAGACTAATTTGATGTGGCTTGCTTGGCTGGGCTAAAGTTTATACAACATCAATTCTTTTTTAGATTACGGGTTTATATATATATATATATtATTttttttttgggggggggggggtGTTTAACCTTTTATCGTTGATGCTATCTTCACCCTTACTTTTGTGTGTGTGTTTAATATATAATGAATGAAATCATCACCAGATATTTGTCGATTTTAAGGAAATATATTGATTTAAACTTAGACCCTATTTTCTAACCATTTGATTTCTTAAATTTGCGCTTGTTTCACACCAAAACTTTAGAATGGTTTTCATCATTCCTAAACAAACATGTGAATTCTTAGGCAATTTCCAACAGCAGGAACAAGTTTCCAAAATCTACTTTTCTTAGTTTTAGAAAATGGGCTTGATTTTGGAAACAAATTATGTGACAAGGAAACTCTAATGTACAAGTAGTTCTTTATAAGCTTAATCTCCAAAAACCGAACGGTTATCTAACAGGTTAGATCATTATGTGCTTTCCAAAAGTTGTATTGGGATGAATTGTTGTGGACAAATGTTTGATTTTGTCTTCAAAATTGATTTTCTTAACCAATGGGCATTTCATTGCAGAATTCATACATTTAGGAATAAGCCTGGGTTTTTTTTTtCAACTGTAGCAATTGAGAGAAGGATGTCATCTTTTGGTGAAGACACCCATTGGTGCCATCAATGCCACCATTCATTCTGGCTTGATGGAGAAGACATAGTTTGCCCTCATTGTTATGGTGGTTTCGTCGAAGAACTAAACGATGAACATGATGAAACAGTTCAAAATGACTTTAATCCAGGCATAGAAGAAGATCTTTCAACCCAGGTGCCTCCAATTTTCGAAGCTATGTTTGCATTAATGGGACGAAGAAGTCCTTATCCAAGATTTGGTCTTCTCGAAGCTGTTGATACTTTCACCAGAGAGAGAATGGCTGGAAGAAATCCTAACTTTGACGTCAGGAGAAGATCTGGTTCTGTTCCAGGGCAGAATTTGGATTTTTTCAACTCTTTTTGGTCATTCCATGATCACATGTCGGGTTCGACCTTTGCTAATGTCACTCCAGAAGGTAGATCAAGTCAGCATACGGGACTGGAAGAATTAGCCGCACAACTTTCCTTAAATGAACAAAGAGAACCAGTCCCAACTCCTGCTTCTCACTCTTGTATAGAAGCAATGCCCACAATCAAGATTAACCAAATGCACCTCGGCACCGACTCTCATTGTCCAGTCTGTAAAGAAAAATTTGAGCTCGAATCTGAAGCCAAAGCTTTGCCATGTAATCATATCTATCACAATGATTGCATTCTTCCTTGGCTGGTCCAACATAATACTTGCCCGGTTTGTCGACTCGAGCTGCCTCAGCAGGAAAGTGGACACAGTTGGGGAGGGAGTGGTGACAACAACAGTGAAGACCTAAATGAGAGAGAGATTACTCAACGAAACCTGAGAAGGAGGCATCCGATCCCAGATTTCTTTGCTCCTCGTCGAATTGTCACTCGTTTCAGCAGTGGGATTCATATAAATGGCCTATCTTCAGATCGAGATCACGATAACGAGATGGGTTACCCTGAATGACGACCTTTCCATTATGGTCTACAACTCTTCTCTACTTTAGAAGCTGCTGAGCATATGGGAAAGAAAGCTGTGTTCTACAACAAATGAGGTAATAAGAAATAAGAATCAGCTCTAGAGGAGTTGTAATATCTAGAGCTGTTTTTTtCTTCCACCTTTTTTTtCCcTTCCTTCTTTTGTGTAAAATGATATGAAAAAAAaTCTCATATCTCCTACAATGACTTGTACTGGGAAAAAaGGGGCCCTAGAGATGAAATCAAATGTAATTATAGTTGATATGTCCCATGGATCAATTGAAGCCATTTGCCTTTTCTGATTTGTGAGCTTCAATGATGAGAAGAAGATTTGAAAAGGAGCAATAG GGTCCTCTCGTTCTCTCTCTCTCTCCGCTCTTGATCCAAATCTTCATTCACTGTTCTTGTTTCTCCTTCTTCCCCAACCCTCCCACTTCCCCTACTTCAGCTTCGCAATTGAGAGAAGGATGTCATCTTTTGGTGAAGACACCCATTGGTGCCATCAATGCCACCATTCATTCTGGCTTGATGGAGAAGACATAGTTTGCCCTCATTGTTATGGTGGTTTCGTCGAAGAACTAAACGATGAACATGATGAAACAGTTCAAAATGACTTTAATCCAGGCATAGAAGAAGATCTTTCAACCCAGGTGCCTCCAATTTTCGAAGCTATGTTTGCATTAATGGGACGAAGAAGTCCTTATCCAAGATTTGGTCTTCTCGAAGCTGTTGATACTTTCACCAGAGAGAGAATGGCTGGAAGAAATCCTAACTTTGACGTCAGGAGAAGATCTGGTTCTGTTCCAGGGCAGAATTTGGATTTTTTCAACTCTTTTTGGTCATTCCATGATCACATGTCGGGTTCGACCTTTGCTAATGTCACTCCAGAAGGTAGATCAAGTCAGCATACGGGACTGGAAGAATTAGCCGCACAACTTTCCTTAAATGAACAAAGAGAACCAGTCCCAACTCCTGCTTCTCACTCTTGTATAGAAGCAATGCCCACAATCAAGATTAACCAAATGCACCTCGGCACCGACTCTCATTGTCCAGTCTGTAAAGAAAAATTTGAGCTCGAATCTGAAGCCAAAGCTTTGCCATGTAATCATATCTATCACAATGATTGCATTCTTCCTTGGCTGGTCCAACATAATACTTGCCCGGTTTGTCGACTCGAGCTGCCTCAGCAGGAAAGTGGACACAGTTGGGGAGGGAGTGGTGACAACAACAGTGAAGACCTAAATGAGAGAGAGATTACTCAACGAAACCTGAGAAGGAGGCATCCGATCCCAGATTTCTTTGCTCCTCGTCGAATTGTCACTCGTTTCAGCAGTGGGATTCATATAAATGGCCTATCTTCAGATCGAGATCACGATAACGAGATGGGTTACCCTGAATGACGACCTTTCCATTATGGTCTACAACTCTTCTCTACTTTAGAAGCTGCTGAGCATATGGGAAAGAAAGCTGTGTTCTACAACAAATGAGGTAATAAGAAATAAGAATCAGCTCTAGAGGAGTTGTAATATCTAGAGCTGTTTTTTTCTTCCACCTTTTTTTTCCCTTCCTTCTTTTGTGTAAAATGATATGAAAAAAAATCTCATATCTCCTACAATGACTTGTACTGGGAAAAAAGGGGCCCTAGAGATGAAATCAAATGTAATTATAGTTGATATGTCCCATGGATCAATTGAAGCCATTTGCCTTTTCTGATTTGTGAGCTTCAATGATGAGAAGAAGATTTGAAAAGGAGCAATAG ATGTCATCTTTTGGTGAAGACACCCATTGGTGCCATCAATGCCACCATTCATTCTGGCTTGATGGAGAAGACATAGTTTGCCCTCATTGTTATGGTGGTTTCGTCGAAGAACTAAACGATGAACATGATGAAACAGTTCAAAATGACTTTAATCCAGGCATAGAAGAAGATCTTTCAACCCAGGTGCCTCCAATTTTCGAAGCTATGTTTGCATTAATGGGACGAAGAAGTCCTTATCCAAGATTTGGTCTTCTCGAAGCTGTTGATACTTTCACCAGAGAGAGAATGGCTGGAAGAAATCCTAACTTTGACGTCAGGAGAAGATCTGGTTCTGTTCCAGGGCAGAATTTGGATTTTTTCAACTCTTTTTGGTCATTCCATGATCACATGTCGGGTTCGACCTTTGCTAATGTCACTCCAGAAGGTAGATCAAGTCAGCATACGGGACTGGAAGAATTAGCCGCACAACTTTCCTTAAATGAACAAAGAGAACCAGTCCCAACTCCTGCTTCTCACTCTTGTATAGAAGCAATGCCCACAATCAAGATTAACCAAATGCACCTCGGCACCGACTCTCATTGTCCAGTCTGTAAAGAAAAATTTGAGCTCGAATCTGAAGCCAAAGCTTTGCCATGTAATCATATCTATCACAATGATTGCATTCTTCCTTGGCTGGTCCAACATAATACTTGCCCGGTTTGTCGACTCGAGCTGCCTCAGCAGGAAAGTGGACACAGTTGGGGAGGGAGTGGTGACAACAACAGTGAAGACCTAAATGAGAGAGAGATTACTCAACGAAACCTGAGAAGGAGGCATCCGATCCCAGATTTCTTTGCTCCTCGTCGAATTGTCACTCGTTTCAGCAGTGGGATTCATATAAATGGCCTATCTTCAGATCGAGATCACGATAACGAGATGGGTTACCCTGAATGA MSSFGEDTHWCHQCHHSFWLDGEDIVCPHCYGGFVEELNDEHDETVQNDFNPGIEEDLSTQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFFNSFWSFHDHMSGSTFANVTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPTIKINQMHLGTDSHCPVCKEKFELESEAKALPCNHIYHNDCILPWLVQHNTCPVCRLELPQQESGHSWGGSGDNNSEDLNEREITQRNLRRRHPIPDFFAPRRIVTRFSSGIHINGLSSDRDHDNEMGYPE*
BLAST of Cucsa.142510.1 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 5.9e-41 Identity = 119/332 (35.84%), Postives = 162/332 (48.80%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 8.0e-30 Identity = 88/273 (32.23%), Postives = 127/273 (46.52%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. Swiss-Prot
Match: RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 4.4e-28 Identity = 86/256 (33.59%), Postives = 123/256 (48.05%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. Swiss-Prot
Match: R126B_XENLA (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 5.4e-26 Identity = 79/277 (28.52%), Postives = 121/277 (43.68%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 2.7e-25 Identity = 89/304 (29.28%), Postives = 133/304 (43.75%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TrEMBL
Match: A0A0A0LZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600760 PE=4 SV=1) HSP 1 Score: 669.1 bits (1725), Expect = 2.6e-189 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TrEMBL
Match: W9QUU8_9ROSA (E3 ubiquitin-protein ligase RING1-like protein OS=Morus notabilis GN=L484_022532 PE=4 SV=1) HSP 1 Score: 263.5 bits (672), Expect = 3.3e-67 Identity = 156/329 (47.42%), Postives = 196/329 (59.57%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TrEMBL
Match: A0A151QZ96_CAJCA (RING finger protein 126 family OS=Cajanus cajan GN=KK1_043322 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 4.4e-67 Identity = 139/287 (48.43%), Postives = 184/287 (64.11%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TrEMBL
Match: I1M784_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G039000 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 1.3e-66 Identity = 146/323 (45.20%), Postives = 189/323 (58.51%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TrEMBL
Match: A0A0B2R254_GLYSO (E3 ubiquitin-protein ligase RING1-like OS=Glycine soja GN=glysoja_038229 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 1.3e-66 Identity = 146/323 (45.20%), Postives = 189/323 (58.51%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein) HSP 1 Score: 177.6 bits (449), Expect = 1.2e-44 Identity = 112/293 (38.23%), Postives = 142/293 (48.46%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A) HSP 1 Score: 169.5 bits (428), Expect = 3.3e-42 Identity = 119/332 (35.84%), Postives = 162/332 (48.80%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 132.5 bits (332), Expect = 4.5e-31 Identity = 88/273 (32.23%), Postives = 127/273 (46.52%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TAIR10
Match: AT2G39720.1 (AT2G39720.1 RING-H2 finger C2A) HSP 1 Score: 126.7 bits (317), Expect = 2.5e-29 Identity = 86/256 (33.59%), Postives = 123/256 (48.05%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein) HSP 1 Score: 115.2 bits (287), Expect = 7.4e-26 Identity = 81/263 (30.80%), Postives = 118/263 (44.87%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. NCBI nr
Match: gi|449452702|ref|XP_004144098.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126-B-like [Cucumis sativus]) HSP 1 Score: 669.1 bits (1725), Expect = 3.8e-189 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. NCBI nr
Match: gi|700211291|gb|KGN66387.1| (hypothetical protein Csa_1G600760 [Cucumis sativus]) HSP 1 Score: 669.1 bits (1725), Expect = 3.8e-189 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. NCBI nr
Match: gi|659100327|ref|XP_008451039.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]) HSP 1 Score: 639.4 bits (1648), Expect = 3.2e-180 Identity = 293/310 (94.52%), Postives = 303/310 (97.74%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. NCBI nr
Match: gi|1012202077|ref|XP_015973474.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis duranensis]) HSP 1 Score: 268.9 bits (686), Expect = 1.1e-68 Identity = 143/289 (49.48%), Postives = 178/289 (61.59%), Query Frame = 1
BLAST of Cucsa.142510.1 vs. NCBI nr
Match: gi|1021488476|ref|XP_016187219.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis ipaensis]) HSP 1 Score: 265.0 bits (676), Expect = 1.6e-67 Identity = 141/289 (48.79%), Postives = 178/289 (61.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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