Cucsa.132700.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAATTTAATCCAATATATCAATCGAATCATA ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCcatcatcatcttcatcaccaccatcatcatcaccaCCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAATTTAATCCAATATATCAATCGAATCATA ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGATCACGGCGTTTAGTTAA MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGESSPGPLMRCSSAKDKSRSRECHDIKDRLPSFISRLGRHGRRHSASADFHYDALSYSLNFDEGYDEGHVDDDFPLRNFSSRLPASPPKSSPSTTTASREMITAFS*
BLAST of Cucsa.132700.1 vs. TrEMBL
Match: A0A0A0LL60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009350 PE=4 SV=1) HSP 1 Score: 347.1 bits (889), Expect = 1.2e-92 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. TrEMBL
Match: A0A068USA7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031261001 PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 9.8e-18 Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. TrEMBL
Match: G7JHT0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g116500 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 2.9e-17 Identity = 66/153 (43.14%), Postives = 79/153 (51.63%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. TrEMBL
Match: W9RT07_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007618 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 2.9e-17 Identity = 69/169 (40.83%), Postives = 95/169 (56.21%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. TrEMBL
Match: I1MTZ4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G105200 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 2.0e-15 Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. TAIR10
Match: AT5G35090.1 (AT5G35090.1 unknown protein) HSP 1 Score: 82.8 bits (203), Expect = 2.2e-16 Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. TAIR10
Match: AT3G01430.1 (AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)) HSP 1 Score: 54.7 bits (130), Expect = 6.3e-08 Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. TAIR10
Match: AT5G14890.1 (AT5G14890.1 NHL domain-containing protein) HSP 1 Score: 52.0 bits (123), Expect = 4.1e-07 Identity = 30/76 (39.47%), Postives = 39/76 (51.32%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. TAIR10
Match: AT5G11070.1 (AT5G11070.1 unknown protein) HSP 1 Score: 48.5 bits (114), Expect = 4.5e-06 Identity = 30/92 (32.61%), Postives = 44/92 (47.83%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. NCBI nr
Match: gi|778673966|ref|XP_011650096.1| (PREDICTED: NEDD8-specific protease 1 [Cucumis sativus]) HSP 1 Score: 347.1 bits (889), Expect = 1.7e-92 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. NCBI nr
Match: gi|659071606|ref|XP_008460859.1| (PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]) HSP 1 Score: 314.7 bits (805), Expect = 9.6e-83 Identity = 151/166 (90.96%), Postives = 157/166 (94.58%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. NCBI nr
Match: gi|743808138|ref|XP_010928264.1| (PREDICTED: uncharacterized protein LOC105050093 [Elaeis guineensis]) HSP 1 Score: 109.4 bits (272), Expect = 6.1e-21 Identity = 66/144 (45.83%), Postives = 84/144 (58.33%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. NCBI nr
Match: gi|720031112|ref|XP_010265711.1| (PREDICTED: uncharacterized protein LOC104603387 [Nelumbo nucifera]) HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20 Identity = 68/147 (46.26%), Postives = 90/147 (61.22%), Query Frame = 1
BLAST of Cucsa.132700.1 vs. NCBI nr
Match: gi|729319987|ref|XP_010533080.1| (PREDICTED: uncharacterized protein LOC104808923 [Tarenaya hassleriana]) HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20 Identity = 66/160 (41.25%), Postives = 85/160 (53.12%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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