Cucsa.120980.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATCGTAAGAAAAGGATGTGGTCATTCAGAGTCGCCGTCGACGATATGAAGGTTTTGATAGATCCGTTGATAACATTGGGATTGGTGGATGTAATGGCGGATGCAATATTTTCACCGGACACGTTTTGCATAATGGCGGATTCGGATGCTTCCATTCACAGCGCCTTCGGAGTTCAACTCTGGCCTCCATTCTTCGACAGCTTCTACTCCGACGACATTCGTCAACTGTTCTGGTTCCGCCTTACTCATCTTTTCCCTCTCGCCGTAGAATTGCTAGAATCTGGTTACACTTCTCTAACCTTCTCTATCGAACGCTTCCGTTACAATTACGCCCAATTCAAATTCGAAGGACCGAACGGTAAGTCTTCTTCTACTTCTTCTTTAATTCTTTCTTTTTtTTtCAAGATTTTTATTTATTTGATTTCTTGAATGTAATTCTGTTTTCTAGGGCTTCTCCGCGATGTTAATTTCCTATTGACTCCGGTCGTCCGTCCCTTGAGGATTGGCCAAATCGATCTATCTGCTTTTGTTTCCATGGATTCTGAAGAATTCTCCAACATCATTTCTGAATATCATATGTTTGATTACGGTAAATTACTACATTTTTTGTCAATTTCAATGTTAGTCAATAGGGAAACCCTAAACCCTTATTATTATTTACAGTTGAAGTTATTATAACGAGCAGACGGGTGTCATTCTCTTATGCAATTATACAAGAGACAATTATTACTCCAGAGGTATATGATTTTAATTTAGAAGTTTGAGGATGTTAATTAATGAATTGATATAAAAGTATGGCTTAATTGTTGGTAATAATTAATGTAGGATGGGCAATGCCTAATTGGGGGTGTTAGAGCACCAAATCAAGTTCAGTTCATAATTACTATGAGTCAACCAGATGCTTTCTATCATTTTGCAAGTCAATCGAAGAGAATATGGCTCTTTAAGGAAGTTAATTCTACCAAAGGAATAATTACTGCCCCTCTTGGATTGTATGGTCGACTTGTCTCTTTCTTTTGTGATGTCACTGCATTCCCTATGTAACTGAATTACATATAATTCAATATTATATGTCTCTCTGTCTTCTTTTTtCGTATAAAAATAATCACATTTGTTCAAGAGGTTCTGCATAATCTTGATGATTGAATCACGTATAATTCAATACTATATGTTTCTTTGTTTTCCTTGTTGTATAAAAATAATGAAGTATGTTCAAGAAGTTTAGTTGGAATTTGTTAGGCATGAAATAAACATACATATGATCGAATAAGACTTGAACCTAGGCTTGGAGAGAGTTGGGAGACTGTTTTAATATGAGCTAACTTTTAAAATTGATATGATTTCAGTTTATATATATATATAATACAAATAGCATAAATGTTGAACACTCTCAATATCGGTCGTGCAAATACATATGATTTTTCAATTCAATTAATGAGAATACGAAATTGTCCTTTGAATTTCTTTTTCAACTTCCTAGTAAAAAGTAATTTGAAAGCGAATATTTATTAAAGGATAGATAAGCCGTGCTTATATTGATTAACATAATAAGTTTAGGCATTTGATGAATATTAATATTAAATATTATACGTGTCATTGTATCAATTTTTTACTAACCAATTTTTTATTCATCTTTATCAAAATGAATAAAATTCAAGTGATATAGTATTTCTCAAAGTCAAATATTTAATTTGTCATCTCATCCATAATAAAGAATAAAAGAGTTTACTATTAGATGGATATAAAAATGAGATTCACTACAACATCCATTGTTCCATCCATTTGAAATAAACAACACAAGTTACCAGAATAGTGTTGAGAATGGGGAAATGAAGTTCAGATTTTTTCATCAATCAAGCTGTAAATGGTTAACAGTTTCTACTTTTCAGATTACTTATGGATCTCTGTTTTATTTGTCGAGACACTTGTTAAAGGCAAAATTCCTTGTGATGATCATC AAAAATCGTAAGAAAAGGATGTGGTCATTCAGAGTCGCCGTCGACGATATGAAGGTTTTGATAGATCCGTTGATAACATTGGGATTGGTGGATGTAATGGCGGATGCAATATTTTCACCGGACACGTTTTGCATAATGGCGGATTCGGATGCTTCCATTCACAGCGCCTTCGGAGTTCAACTCTGGCCTCCATTCTTCGACAGCTTCTACTCCGACGACATTCGTCAACTGTTCTGGTTCCGCCTTACTCATCTTTTCCCTCTCGCCGTAGAATTGCTAGAATCTGGTTACACTTCTCTAACCTTCTCTATCGAACGCTTCCGTTACAATTACGCCCAATTCAAATTCGAAGGACCGAACGGGCTTCTCCGCGATGTTAATTTCCTATTGACTCCGGTCGTCCGTCCCTTGAGGATTGGCCAAATCGATCTATCTGCTTTTGTTTCCATGGATTCTGAAGAATTCTCCAACATCATTTCTGAATATCATATGTTTGATTACGTTGAAGTTATTATAACGAGCAGACGGGTGTCATTCTCTTATGCAATTATACAAGAGACAATTATTACTCCAGAGGATGGGCAATGCCTAATTGGGGGTGTTAGAGCACCAAATCAAGTTCAGTTCATAATTACTATGAGTCAACCAGATGCTTTCTATCATTTTGCAAGTCAATCGAAGAGAATATGGCTCTTTAAGGAAGTTAATTCTACCAAAGGAATAATTACTGCCCCTCTTGGATTATTACTTATGGATCTCTGTTTTATTTGTCGAGACACTTGTTAAAGGCAAAATTCCTTGTGATGATCATC ATGTGGTCATTCAGAGTCGCCGTCGACGATATGAAGGTTTTGATAGATCCGTTGATAACATTGGGATTGGTGGATGTAATGGCGGATGCAATATTTTCACCGGACACGTTTTGCATAATGGCGGATTCGGATGCTTCCATTCACAGCGCCTTCGGAGTTCAACTCTGGCCTCCATTCTTCGACAGCTTCTACTCCGACGACATTCGTCAACTGTTCTGGTTCCGCCTTACTCATCTTTTCCCTCTCGCCGTAGAATTGCTAGAATCTGGTTACACTTCTCTAACCTTCTCTATCGAACGCTTCCGTTACAATTACGCCCAATTCAAATTCGAAGGACCGAACGGGCTTCTCCGCGATGTTAATTTCCTATTGACTCCGGTCGTCCGTCCCTTGAGGATTGGCCAAATCGATCTATCTGCTTTTGTTTCCATGGATTCTGAAGAATTCTCCAACATCATTTCTGAATATCATATGTTTGATTACGTTGAAGTTATTATAACGAGCAGACGGGTGTCATTCTCTTATGCAATTATACAAGAGACAATTATTACTCCAGAGGATGGGCAATGCCTAATTGGGGGTGTTAGAGCACCAAATCAAGTTCAGTTCATAATTACTATGAGTCAACCAGATGCTTTCTATCATTTTGCAAGTCAATCGAAGAGAATATGGCTCTTTAAGGAAGTTAATTCTACCAAAGGAATAATTACTGCCCCTCTTGGATTATTACTTATGGATCTCTGTTTTATTTGTCGAGACACTTGTTAA MWSFRVAVDDMKVLIDPLITLGLVDVMADAIFSPDTFCIMADSDASIHSAFGVQLWPPFFDSFYSDDIRQLFWFRLTHLFPLAVELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSMDSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPEDGQCLIGGVRAPNQVQFIITMSQPDAFYHFASQSKRIWLFKEVNSTKGIITAPLGLLLMDLCFICRDTC*
BLAST of Cucsa.120980.1 vs. TrEMBL
Match: A0A0A0KFM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106730 PE=4 SV=1) HSP 1 Score: 479.6 bits (1233), Expect = 2.4e-132 Identity = 240/251 (95.62%), Postives = 243/251 (96.81%), Query Frame = 1
BLAST of Cucsa.120980.1 vs. TrEMBL
Match: A0A0A0KA18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006750 PE=4 SV=1) HSP 1 Score: 431.8 bits (1109), Expect = 5.8e-118 Identity = 212/254 (83.46%), Postives = 235/254 (92.52%), Query Frame = 1
BLAST of Cucsa.120980.1 vs. TrEMBL
Match: A0A0A0LIF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848840 PE=4 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 2.4e-71 Identity = 136/251 (54.18%), Postives = 181/251 (72.11%), Query Frame = 1
BLAST of Cucsa.120980.1 vs. TrEMBL
Match: A0A0A0K7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13 Identity = 68/245 (27.76%), Postives = 115/245 (46.94%), Query Frame = 1
BLAST of Cucsa.120980.1 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12 Identity = 72/242 (29.75%), Postives = 111/242 (45.87%), Query Frame = 1
BLAST of Cucsa.120980.1 vs. NCBI nr
Match: gi|778722070|ref|XP_011658399.1| (PREDICTED: uncharacterized protein LOC105435987 [Cucumis sativus]) HSP 1 Score: 479.6 bits (1233), Expect = 3.5e-132 Identity = 240/251 (95.62%), Postives = 243/251 (96.81%), Query Frame = 1
BLAST of Cucsa.120980.1 vs. NCBI nr
Match: gi|700191317|gb|KGN46521.1| (hypothetical protein Csa_6G106730 [Cucumis sativus]) HSP 1 Score: 479.6 bits (1233), Expect = 3.5e-132 Identity = 240/251 (95.62%), Postives = 243/251 (96.81%), Query Frame = 1
BLAST of Cucsa.120980.1 vs. NCBI nr
Match: gi|778709186|ref|XP_004138491.2| (PREDICTED: uncharacterized protein LOC101219791 [Cucumis sativus]) HSP 1 Score: 431.8 bits (1109), Expect = 8.4e-118 Identity = 212/254 (83.46%), Postives = 235/254 (92.52%), Query Frame = 1
BLAST of Cucsa.120980.1 vs. NCBI nr
Match: gi|659119586|ref|XP_008459734.1| (PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo]) HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74 Identity = 140/240 (58.33%), Postives = 178/240 (74.17%), Query Frame = 1
BLAST of Cucsa.120980.1 vs. NCBI nr
Match: gi|778686233|ref|XP_004146827.2| (PREDICTED: uncharacterized protein LOC101206630 isoform X1 [Cucumis sativus]) HSP 1 Score: 276.9 bits (707), Expect = 3.5e-71 Identity = 136/251 (54.18%), Postives = 181/251 (72.11%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
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