Cucsa.120140.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.120140.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NBS-LRR class disease resistance protein
Location	scaffold00998 : 2134424 .. 2134864 (-)
Sequence length	348

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGATAGTGATTCAAGTGTCCATGAAAAGGGGGCCCAAGTACCGCAGCAAAGCCTTGAAGATTGCAGCATCTGTCAAAGGTAATTAAAAACTATTGCATATATATATATATATTTATAACATAACTATAATCTATATTGATATAACTAATTAGTTTACAATGGAAATTACAGGGAGCATTGAGACAATTAGCTTGGTAGGAGACCATAAAGATAAAGTGGAGGTAGTTGGAGATTTAGATCCCATAGAACTCACTGAATTGCTAAGGAAGGGTTTCGGTTCCGCACAGTTGGAGTCAGTGAGCGCAGTTGAAGATAAAGAGAAAAAGAAAGATAAAGACGATGGCATAACATGGACATGCTCGTGGGGAGTGCCTCATCATTCATCTTATTGCTATTGCTACAACCTTCGCCCCTACCCTTCCCATTCCATATGGTGA

mRNA sequence

CAAAAGATAGTGATTCAAGTGTCCATGAAAAGGGGGCCCAAGTACCGCAGCAAAGCCTTGAAGATTGCAGCATCTGTCAAAGGGAGCATTGAGACAATTAGCTTGGTAGGAGACCATAAAGATAAAGTGGAGGTAGTTGGAGATTTAGATCCCATAGAACTCACTGAATTGCTAAGGAAGGGTTTCGGTTCCGCACAGTTGGAGTCAGTGAGCGCAGTTGAAGATAAAGAGAAAAAGAAAGATAAAGACGATGGCATAACATGGACATGCTCGTGGGGAGTGCCTCATCATTCATCTTATTGCTATTGCTACAACCTTCGCCCCTACCCTTCCCATTCCATATGGTGA

Coding sequence (CDS)

CAAAAGATAGTGATTCAAGTGTCCATGAAAAGGGGGCCCAAGTACCGCAGCAAAGCCTTGAAGATTGCAGCATCTGTCAAAGGGAGCATTGAGACAATTAGCTTGGTAGGAGACCATAAAGATAAAGTGGAGGTAGTTGGAGATTTAGATCCCATAGAACTCACTGAATTGCTAAGGAAGGGTTTCGGTTCCGCACAGTTGGAGTCAGTGAGCGCAGTTGAAGATAAAGAGAAAAAGAAAGATAAAGACGATGGCATAACATGGACATGCTCGTGGGGAGTGCCTCATCATTCATCTTATTGCTATTGCTACAACCTTCGCCCCTACCCTTCCCATTCCATATGGTGA

Protein sequence

QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRKGFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW*

Homology

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BLAST of Cucsa.120140.1 vs. TrEMBL
Match: A0A0A0KAU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113600 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-60
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRK 60
           QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRK
Sbjct: 3   QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRK 62

Query: 61  GFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 116
           GFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW
Sbjct: 63  GFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 117

[Close]

BLAST of Cucsa.120140.1 vs. TrEMBL
Match: A0A059A2R2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01377 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-13
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1


Query: 1   QKIVIQVSMK-----------RGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDL 60
           QK+VI VSMK           R P   SKALK+A   +G +++++LVGD +D++EV GD+
Sbjct: 3   QKVVINVSMKDHATRFFCFSPRNP--HSKALKLAGGFQG-VQSVALVGD-QDRIEVTGDV 62

Query: 61  DPIELTELLRKGFGSAQLESVSAVEDKEKKKDKD---DGITWTCSWGVPHHSSYCYCYNL 113
           D + LT LLRK  G A++ +VS +++K+KK+ KD     I W    GVPH       Y  
Sbjct: 63  DAVNLTTLLRKKVGFAKIVTVSKLDEKDKKESKDKEAPPIVWPYIGGVPHRE---IAYVA 121

[Close]

BLAST of Cucsa.120140.1 vs. TrEMBL
Match: B9SF21_RICCO (Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1213020 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-12
Identity = 59/119 (49.58%), Postives = 72/119 (60.50%), Query Frame = 1


Query: 1   QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGD-LDPIELTELLR 60
           QK+VI+VSM  G K RSKALKIA SV G +E+ SL G  K ++EVVGD +D +EL  +LR
Sbjct: 3   QKVVIRVSMN-GQKSRSKALKIAVSVSG-VESASLGGQDKSQIEVVGDGVDAVELATMLR 62

Query: 61  KGFGSAQLESVSAV-EDKEKKKD--KDDGITWTCSW-----GVPHHSSYCYCYNLRPYP 111
           K  G A+L SVSAV E KE+KK+  KDD       W     GVP +       N  P P
Sbjct: 63  KNVGHAELVSVSAVGEKKEEKKEEKKDDPKVQHMVWPYYGGGVPSYGYEVKGCNQYPDP 119

[Close]

BLAST of Cucsa.120140.1 vs. TrEMBL
Match: A0A0D2QTX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G164100 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-12
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 1  QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGD-LDPIELTELLR 60
          QK+V++V+MK G K RSKALKI   + G +E+ SL GD K ++EV GD +D ++LT LLR
Sbjct: 3  QKMVVKVTMK-GEKSRSKALKIVVGLSG-VESASLKGDDKSQIEVTGDGVDAVKLTSLLR 62

Query: 61 KGFGSAQLESVSAVEDKEKKKDK 83
          KG G A+L SVSA + K+ KKD+
Sbjct: 63 KGVGYAELVSVSAADKKDDKKDE 83

[Close]

BLAST of Cucsa.120140.1 vs. TrEMBL
Match: A0A164WBG7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021079 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-11
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 1


Query: 1   QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVG-DLDPIELTELLR 60
           QK+VI+V M    K R+KA+KIAA+  G +E++++ GD KDK+EV+G ++D + L +LLR
Sbjct: 3   QKVVIRVDMSDPKKSRAKAMKIAATFSG-VESVAIKGDDKDKLEVIGEEIDTVVLAKLLR 62

Query: 61  KGFGSAQLESVSAV-EDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSH 113
           K  G A L S+  V +DK+ KKD+         +G  +  +Y YC    P PS+
Sbjct: 63  KSXGRADLVSIGPVKDDKKDKKDEVKIKPKLQGYGSNYPYNYYYC---EPVPSY 112

[Close]

BLAST of Cucsa.120140.1 vs. TAIR10
Match: AT5G48290.1 (AT5G48290.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 1  QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVG-DLDPIELTELLR 60
          QKI+I+V+M    K R+KA+  A   KG +  + + GDH++++EV G ++D I L ++LR
Sbjct: 3  QKILIRVTMT-DDKTRAKAMTKAVQFKG-VSAVEIKGDHRNQIEVTGVEVDMIPLIQILR 62

Query: 61 KGFGSAQLESVSAVEDKEKKKDKDDG 86
          K    A+L SV+ VE  +K+ +K  G
Sbjct: 63 KKVAFAELVSVTKVEPPKKEDEKKGG 86

[Close]

BLAST of Cucsa.120140.1 vs. NCBI nr
Match: gi|449444610|ref|XP_004140067.1| (PREDICTED: uncharacterized protein LOC101216311 [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 2.1e-60
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRK 60
           QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRK
Sbjct: 3   QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRK 62

Query: 61  GFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 116
           GFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW
Sbjct: 63  GFGSAQLESVSAVEDKEKKKDKDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSIW 117

[Close]

BLAST of Cucsa.120140.1 vs. NCBI nr
Match: gi|659094578|ref|XP_008448137.1| (PREDICTED: uncharacterized protein LOC103490424 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-51
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 1


Query: 1   QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDLDPIELTELLRK 60
           QKIVI+VSMKRGPKYRSKALKIAASVKGSIETISLVGD KDKVEVVGD+DP+ELTELLRK
Sbjct: 3   QKIVIRVSMKRGPKYRSKALKIAASVKGSIETISLVGDDKDKVEVVGDIDPMELTELLRK 62

Query: 61  GFGSAQLESVSAVEDKEKKKD----KDDGITWTCSWGVPHHSSYCYCYNLRPYPSHSI 115
           GFGSAQLE+V+AVEDK+K KD    KD GITWTCSWGVPHHSSYCYCYNL PYPS+SI
Sbjct: 63  GFGSAQLETVNAVEDKDKDKDKDKNKDGGITWTCSWGVPHHSSYCYCYNLGPYPSYSI 120

[Close]

BLAST of Cucsa.120140.1 vs. NCBI nr
Match: gi|702492055|ref|XP_010036115.1| (PREDICTED: uncharacterized protein LOC104425195 [Eucalyptus grandis])

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-13
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1


Query: 1   QKIVIQVSMK-----------RGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGDL 60
           QK+VI VSMK           R P   SKALK+A   +G +++++LVGD +D++EV GD+
Sbjct: 3   QKVVINVSMKDHATRFFCFSPRNP--HSKALKLAGGFQG-VQSVALVGD-QDRIEVTGDV 62

Query: 61  DPIELTELLRKGFGSAQLESVSAVEDKEKKKDKD---DGITWTCSWGVPHHSSYCYCYNL 113
           D + LT LLRK  G A++ +VS +++K+KK+ KD     I W    GVPH       Y  
Sbjct: 63  DAVNLTTLLRKKVGFAKIVTVSKLDEKDKKESKDKEAPPIVWPYIGGVPHRE---IAYVA 121

[Close]

BLAST of Cucsa.120140.1 vs. NCBI nr
Match: gi|255567218|ref|XP_002524590.1| (PREDICTED: uncharacterized protein LOC8288326 [Ricinus communis])

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-12
Identity = 59/119 (49.58%), Postives = 72/119 (60.50%), Query Frame = 1


Query: 1   QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGD-LDPIELTELLR 60
           QK+VI+VSM  G K RSKALKIA SV G +E+ SL G  K ++EVVGD +D +EL  +LR
Sbjct: 3   QKVVIRVSMN-GQKSRSKALKIAVSVSG-VESASLGGQDKSQIEVVGDGVDAVELATMLR 62

Query: 61  KGFGSAQLESVSAV-EDKEKKKD--KDDGITWTCSW-----GVPHHSSYCYCYNLRPYP 111
           K  G A+L SVSAV E KE+KK+  KDD       W     GVP +       N  P P
Sbjct: 63  KNVGHAELVSVSAVGEKKEEKKEEKKDDPKVQHMVWPYYGGGVPSYGYEVKGCNQYPDP 119

[Close]

BLAST of Cucsa.120140.1 vs. NCBI nr
Match: gi|823189924|ref|XP_012490993.1| (PREDICTED: uncharacterized protein LOC105803388 [Gossypium raimondii])

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 1  QKIVIQVSMKRGPKYRSKALKIAASVKGSIETISLVGDHKDKVEVVGD-LDPIELTELLR 60
          QK+V++V+MK G K RSKALKI   + G +E+ SL GD K ++EV GD +D ++LT LLR
Sbjct: 3  QKMVVKVTMK-GEKSRSKALKIVVGLSG-VESASLKGDDKSQIEVTGDGVDAVKLTSLLR 62

Query: 61 KGFGSAQLESVSAVEDKEKKKDK 83
          KG G A+L SVSA + K+ KKD+
Sbjct: 63 KGVGYAELVSVSAADKKDDKKDE 83

The following BLAST results are available for this feature:

BLAST of Cucsa.120140.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU7_CUCSA	1.5e-60	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113600 PE=4 SV=1	[more]
A0A059A2R2_EUCGR	5.1e-13	42.06	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01377 PE=4 SV=1	[more]
B9SF21_RICCO	3.3e-12	49.58	Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1213020 PE=4 SV=...	[more]
A0A0D2QTX7_GOSRA	4.4e-12	54.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G164100 PE=4 SV=1	[more]
A0A164WBG7_DAUCA	3.7e-11	41.23	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021079 PE=4 SV=1	[more]

BLAST of Cucsa.120140.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48290.1	1.2e-08	39.53	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of Cucsa.120140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444610\|ref\|XP_004140067.1\|	2.1e-60	100.00	PREDICTED: uncharacterized protein LOC101216311 [Cucumis sativus]	[more]
gi\|659094578\|ref\|XP_008448137.1\|	3.1e-51	87.29	PREDICTED: uncharacterized protein LOC103490424 [Cucumis melo]	[more]
gi\|702492055\|ref\|XP_010036115.1\|	7.4e-13	42.06	PREDICTED: uncharacterized protein LOC104425195 [Eucalyptus grandis]	[more]
gi\|255567218\|ref\|XP_002524590.1\|	4.8e-12	49.58	PREDICTED: uncharacterized protein LOC8288326 [Ricinus communis]	[more]
gi\|823189924\|ref\|XP_012490993.1\|	6.2e-12	54.22	PREDICTED: uncharacterized protein LOC105803388 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043168	anion binding
molecular_function	GO:0032550	purine ribonucleoside binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.120140	Cucsa.120140	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.120140.1	Cucsa.120140.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.120140.1.CDS.2	Cucsa.120140.1.CDS.2	CDS
Cucsa.120140.1.CDS.1	Cucsa.120140.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..85 score: 2.7
None	No IPR available	PANTHER	PTHR22814:SF34	COPPER TRANSPORT PROTEIN-RELATED	coord: 1..85 score: 2.7