Cucsa.117920.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.117920.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrotransposon protein
Location	scaffold00997 : 240732 .. 241390 (+)
Sequence length	434

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTTGAGTGAGACAATTTTACATCATTTCAACATGGTATTGCTTGCAGTCATTCACTTACATGATGAGCTGTTGAAAAAACCaCAACCAGTGACAAATGGTTGTACAGATCCAAGATGGAGGTGGTTTGTGGTTCATGTTTCTTTCTACAACTATGTACATCCACCGATCAAACGTGCGATCTAGTCATTAATCATTAGTTGTACGTTATATAATTGTCTTGGCCTATTAGATGCCCATTAGATGACACATACATCAAGGTAAACGTTCCAGCATGTGAGCGGCCTAGATATATAACACGAAAGGGCAAAGTTGCCACAATTGTCCTTGGTGTATGTGATACAATATACAATTTTATGTTCGTATTAGCCGGCTGGGAAGGATTGGCTGCTAACTCACATATTCTTCGAGATGTCATTTCAAGACCGAACAGACTAAGGGTGTCGAAGAGTAATTACTTGCAAAATTGTATATAGAAGTACAAATTTTCCATTATCAGTTACGTATTTTTAATCGTCGAATGTGCTCACAAGCTATTACTACCTAGTCGATGGCGGATACCCAAATGCTAAGGGTTTCTTGGCACCATACAGAGGGAAACGCTACTACCTGCAGGACTGGTGTGGTGTTGAAAATGCACCATCAACTGTGAAAGA

mRNA sequence

atgtgcttgagtgagacaattttacatcatttcaacatggtattgcttgcagtcattcacttacatgatgagctgttgaaaaaaccacaaccagtgacaaatggttgtacagatccaagatggaggtggtttgtggtaaacgttccagcatgtgagcggcctagatatataacacgaaagggcaaagttgccacaattgtccttggtgtatgtgatacaatatacaattttatgttcgtattagccggctgggaaggattggctgctaactcacatattcttcgagatgtcatttcaagaccgaacagactaagggtgtcgaagatcgatggcggatacccaaatgctaagggtttcttggcaccatacagagggaaacgctactacctgcaggactggtgtggtgttgaaaatgcaccatcaactgtgaaaga

Coding sequence (CDS)

ATGTGCTTGAGTGAGACAATTTTACATCATTTCAACATGGTATTGCTTGCAGTCATTCACTTACATGATGAGCTGTTGAAAAAACCaCAACCAGTGACAAATGGTTGTACAGATCCAAGATGGAGGTGGTTTGTGGTAAACGTTCCAGCATGTGAGCGGCCTAGATATATAACACGAAAGGGCAAAGTTGCCACAATTGTCCTTGGTGTATGTGATACAATATACAATTTTATGTTCGTATTAGCCGGCTGGGAAGGATTGGCTGCTAACTCACATATTCTTCGAGATGTCATTTCAAGACCGAACAGACTAAGGGTGTCGAAGATCGATGGCGGATACCCAAATGCTAAGGGTTTCTTGGCACCATACAGAGGGAAACGCTACTACCTGCAGGACTGGTGTGGTGTTGAAAATGCACCATCAACTGTGAAAGA

Protein sequence

MCLSETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFVVNVPACERPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSKIDGGYPNAKGFLAPYRGKRYYLQDWCGVENAPSTVKX

Homology

[Close]

BLAST of Cucsa.117920.1 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.0e-50
Identity = 105/157 (66.88%), Postives = 119/157 (75.80%), Query Frame = 1


Query: 5   ETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV------------VNVPACE 64
           ETI  HFNMVLLAVI LH+ELLKKPQPV N CTD RWRWF             VNVPA +
Sbjct: 98  ETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASD 157

Query: 65  RPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK---- 124
           R RY TRKG+VAT VLGVCDT  +F++VLAGWEG AA+S ILRD +SRPNRL+V K    
Sbjct: 158 RARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYY 217

Query: 125 -IDGGYPNAKGFLAPYRGKRYYLQDWCGVENAPSTVK 145
            +D GYPNA+GFLAPYRG+RY+LQ+W G ENAPST K
Sbjct: 218 LVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK 254

[Close]

BLAST of Cucsa.117920.1 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.7e-40
Identity = 86/157 (54.78%), Postives = 111/157 (70.70%), Query Frame = 1


Query: 5   ETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV------------VNVPACE 64
           ET+  HFN+VLLAV+ L++EL+K+P PVT+ C D RW+ F             VNVPA +
Sbjct: 70  ETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGD 129

Query: 65  RPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK---- 124
           RP + TRKG++AT VLGVCD   +F++VLAGWEG AA+S ILRD IS+ N L+V K    
Sbjct: 130 RPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYY 189

Query: 125 -IDGGYPNAKGFLAPYRGKRYYLQDWCGVENAPSTVK 145
             D GYPNA+GFLAPY+G+RY+LQ+W G  NAP+  K
Sbjct: 190 LCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAPTNAK 226

[Close]

BLAST of Cucsa.117920.1 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 75/146 (51.37%), Postives = 91/146 (62.33%), Query Frame = 1


Query: 5   ETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV------------VNVPACE 64
           ETI  HFN VL AVI L   LLKKP+PV+   TD RW+WF             VNV   +
Sbjct: 129 ETISRHFNAVLNAVIRLQGVLLKKPEPVSENSTDERWKWFKNCLGALDGTYIKVNVREGD 188

Query: 65  RPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK---- 124
           +PRY TRK ++AT VLGVC     F++VL GWEG  ++S +LRD +SR N L V      
Sbjct: 189 KPRYRTRKNEIATNVLGVCSQDMQFIYVLPGWEGSTSDSRVLRDAVSRRNGLTVPHGYYY 248

Query: 125 -IDGGYPNAKGFLAPYRGKRYYLQDW 134
            +D GY N KGFLAPYRG+RY+L DW
Sbjct: 249 LVDVGYTNGKGFLAPYRGQRYHLNDW 274

[Close]

BLAST of Cucsa.117920.1 vs. TrEMBL
Match: A0A061FY73_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014176 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 66/146 (45.21%), Postives = 90/146 (61.64%), Query Frame = 1


Query: 5   ETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV------------VNVPACE 64
           E+I  HF+ VL AV+ L + L +KP+P+    TD +W+WF             V VP+ +
Sbjct: 136 ESISRHFHNVLAAVLKLQEHLFRKPEPIPTNSTDNQWKWFKNCLGALDGTYIRVKVPSAD 195

Query: 65  RPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK---- 124
           +PRY TRKG +AT +LGVC     F+FVL GWEG  A+  +LRD + R N L+V      
Sbjct: 196 KPRYRTRKGNIATNMLGVCTPDMQFVFVLPGWEGSVADGRVLRDALRRRNGLKVPNGCYY 255

Query: 125 -IDGGYPNAKGFLAPYRGKRYYLQDW 134
            +D GY N +GFLAPYRG+RY+L +W
Sbjct: 256 LVDAGYTNCEGFLAPYRGQRYHLNEW 281

[Close]

BLAST of Cucsa.117920.1 vs. TrEMBL
Match: A0A061GDT4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029406 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-29
Identity = 66/146 (45.21%), Postives = 90/146 (61.64%), Query Frame = 1


Query: 5   ETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV------------VNVPACE 64
           E+I  HF+ VL AV+ L + L +KP+P+    TD RW+WF             V VP+ +
Sbjct: 136 ESISRHFHNVLAAVLKLQEYLFRKPEPIPTNSTDNRWKWFKNCLGALDGTYIRVKVPSAD 195

Query: 65  RPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK---- 124
           +PRY TRKG +AT +LGVC     F+FVL GWEG  A+  +LRD + R N L+V      
Sbjct: 196 KPRYRTRKGDIATNMLGVCTLDMQFVFVLPGWEGSVADGRVLRDALRRRNGLKVPNGCYY 255

Query: 125 -IDGGYPNAKGFLAPYRGKRYYLQDW 134
            +D GY N +GFLAP+RG+RY+L +W
Sbjct: 256 LVDAGYSNCEGFLAPFRGQRYHLNEW 281

[Close]

BLAST of Cucsa.117920.1 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-11
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 1


Query: 5   ETILHHFNMVLLAVIHLHDELLKKPQPVTNGCT----DPRWRWFV---------VNVPAC 64
           ETI  HFN VL AVI +  +     QP +N  T    DP ++  V         V V   
Sbjct: 103 ETISRHFNNVLNAVIAISKDFF---QPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVD 162

Query: 65  ERPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK--- 124
           E+  +    G +   VL        F +VLAGWEG A++  +L   ++R N+L+V +   
Sbjct: 163 EQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKY 222

Query: 125 --IDGGYPNAKGFLAPYRG 126
             +D  YPN  GF+APY G
Sbjct: 223 YIVDNKYPNLPGFIAPYHG 238

[Close]

BLAST of Cucsa.117920.1 vs. TAIR10
Match: AT5G28950.1 (AT5G28950.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1


Query: 54  PRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISR-PNRLRVSKID 111
           P +  RKG ++  +L  C+    FM+VL+GWEG A +S +L D ++R  NRL V + D
Sbjct: 44  PSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKVLNDALTRNSNRLPVPEED 101

[Close]

BLAST of Cucsa.117920.1 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 205.3 bits (521), Expect = 7.2e-50
Identity = 105/157 (66.88%), Postives = 119/157 (75.80%), Query Frame = 1


Query: 5   ETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV------------VNVPACE 64
           ETI  HFNMVLLAVI LH+ELLKKPQPV N CTD RWRWF             VNVPA +
Sbjct: 98  ETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASD 157

Query: 65  RPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK---- 124
           R RY TRKG+VAT VLGVCDT  +F++VLAGWEG AA+S ILRD +SRPNRL+V K    
Sbjct: 158 RARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYY 217

Query: 125 -IDGGYPNAKGFLAPYRGKRYYLQDWCGVENAPSTVK 145
            +D GYPNA+GFLAPYRG+RY+LQ+W G ENAPST K
Sbjct: 218 LVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK 254

[Close]

BLAST of Cucsa.117920.1 vs. NCBI nr
Match: gi|659118458|ref|XP_008459130.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 3.6e-49
Identity = 105/161 (65.22%), Postives = 118/161 (73.29%), Query Frame = 1


Query: 1   MCLSETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV------------VNV 60
           M L ETI  HFNMVLLAVI LH ELLKKPQPV N CTD RWRWF             VNV
Sbjct: 52  MRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTYIKVNV 111

Query: 61  PACERPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK 120
           P  +R RY TRKG+VAT VLGVCDT  +F++VLAGWEG AA+S ILRD +SRPN L+V K
Sbjct: 112 PVSDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNGLKVPK 171

Query: 121 -----IDGGYPNAKGFLAPYRGKRYYLQDWCGVENAPSTVK 145
                +D GYPNA+GFLAPYRG+RY+LQ+W G ENAPST K
Sbjct: 172 GYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK 212

[Close]

BLAST of Cucsa.117920.1 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 8.3e-46
Identity = 97/157 (61.78%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 5   ETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV------------VNVPACE 64
           ET+  HFN+VLLA   LHDELLKKPQPVTN CTDPRW+WF             VNV A +
Sbjct: 56  ETVSRHFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSATD 115

Query: 65  RPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK---- 124
           RPRY TRKG+VAT VLG CDT  +F+FVL GWEG AA+S ILRD ISR N L+V K    
Sbjct: 116 RPRYRTRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYY 175

Query: 125 -IDGGYPNAKGFLAPYRGKRYYLQDWCGVENAPSTVK 145
             D GYPNA+GFLAPYRG+RY+L +W G  NAP+T +
Sbjct: 176 LCDAGYPNAEGFLAPYRGERYHLSEWRGESNAPTTAR 212

[Close]

BLAST of Cucsa.117920.1 vs. NCBI nr
Match: gi|659109385|ref|XP_008454689.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 3.1e-45
Identity = 100/161 (62.11%), Postives = 115/161 (71.43%), Query Frame = 1


Query: 1   MCLSETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV------------VNV 60
           M L ETI  HF+MVLL VI LHDELLKKPQPV N CTD RWRWF             VNV
Sbjct: 1   MRLGETISRHFHMVLL-VIRLHDELLKKPQPVANDCTDQRWRWFENYLGALDGTYIKVNV 60

Query: 61  PACERPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK 120
              +R RY TRKG+VAT VLGVCDT  +F++VL+GWEG AA+S ILRD ISRPN L+V K
Sbjct: 61  LESDRARYKTRKGEVATNVLGVCDTKGDFVYVLSGWEGSAADSRILRDAISRPNGLKVPK 120

Query: 121 -----IDGGYPNAKGFLAPYRGKRYYLQDWCGVENAPSTVK 145
                +D GYPNA+ FLAPYRG+RY+LQ+W G EN PS +K
Sbjct: 121 GYYYLVDAGYPNAEDFLAPYRGQRYHLQEWRGAENVPSNLK 160

[Close]

BLAST of Cucsa.117920.1 vs. NCBI nr
Match: gi|659114872|ref|XP_008457266.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.6e-44
Identity = 97/158 (61.39%), Postives = 115/158 (72.78%), Query Frame = 1


Query: 5   ETILHHFNMVLLAVIHLHDELLKKPQPVTNGCTDPRWRWFV-------------VNVPAC 64
           ET+  HFNMVLLAVI LH+ELLKKPQPV N  TD +W + +             VNVPA 
Sbjct: 37  ETMSRHFNMVLLAVIRLHEELLKKPQPVPNEYTDKKWSYVLQNCLGALDGTYIKVNVPAS 96

Query: 65  ERPRYITRKGKVATIVLGVCDTIYNFMFVLAGWEGLAANSHILRDVISRPNRLRVSK--- 124
           +R RY TRKG+VAT VLGVCDT  +F++VL GWEG AA+S ILRD +SRPN L+V K   
Sbjct: 97  DRARYRTRKGEVATNVLGVCDTKGDFVYVLVGWEGSAADSRILRDALSRPNELKVPKGYY 156

Query: 125 --IDGGYPNAKGFLAPYRGKRYYLQDWCGVENAPSTVK 145
             +D GYPNA+GFLAPYRG+RY+LQ+W G ENAPST K
Sbjct: 157 YLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSK 194

The following BLAST results are available for this feature:

BLAST of Cucsa.117920.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	5.0e-50	66.88	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB2_CUCME	4.7e-40	54.78	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5BND9_VITVI	1.4e-31	51.37	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1	[more]
A0A061FY73_THECC	1.3e-29	45.21	Uncharacterized protein OS=Theobroma cacao GN=TCM_014176 PE=4 SV=1	[more]
A0A061GDT4_THECC	2.9e-29	45.21	Uncharacterized protein OS=Theobroma cacao GN=TCM_029406 PE=4 SV=1	[more]

BLAST of Cucsa.117920.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41980.1	4.1e-11	34.53	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]
AT5G28950.1	5.2e-06	41.38	unknown protein	[more]

BLAST of Cucsa.117920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136287\|gb\|ADN34114.1\|	7.2e-50	66.88	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659118458\|ref\|XP_008459130.1\|	3.6e-49	65.22	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
gi\|659111563\|ref\|XP_008455792.1\|	8.3e-46	61.78	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
gi\|659109385\|ref\|XP_008454689.1\|	3.1e-45	62.11	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
gi\|659114872\|ref\|XP_008457266.1\|	1.6e-44	61.39	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.117920	Cucsa.117920	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.117920.1	Cucsa.117920.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.117920.1.CDS.1	Cucsa.117920.1.CDS.1	CDS
Cucsa.117920.1.CDS.2	Cucsa.117920.1.CDS.2	CDS
Cucsa.117920.1.CDS.3	Cucsa.117920.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 3..133 score: 4.7
None	No IPR available	PANTHER	PTHR22930:SF27	SUBFAMILY NOT NAMED	coord: 3..133 score: 4.7