Cucsa.109370.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.109370.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Dehydrin
Location	scaffold00934 : 291200 .. 291897 (-)
Sequence length	273

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATGTACGCGATGAGCATGGGAACCCGGTTCAACTTACCGACGAACGTGGGAACCCTGTTCAACTCACCGACGAATTCGGTAACCCCATGCAGCTCACCGGTGTTGTTGGCACCACACCGTCCAACCTCCATCCCACCCCACCTTCCAACCTCCACCCCACCGCCGTCACCACCACAGGAGAAAACGTTGCTCAAACGCAGCCCCCTCGAGAAATCCATGACGCCTCACCGCGTCGTTCGAGCAGTTCCAGCTCTAGCTCCGTGAGTAATTTAACATTGCGATTCATTCTTGTATCTAAACTTTAGATATTAAAGTTTAAAATATTCTGAATTATATTAGAATAAGATAAAATTATACAATAATAAATATAATATTTCAAGTTATAAACTCAATTATTTTGGTTAAATTAAAATACAGTACGATATCCAAACTCTATAGACAGTTTTGTCTATTGACAGTATCTTATCTTATAAAAAAAAAAGAACTTTACAGACAGTAGCAGTATTATAAATATAGTAAGATATCAAACTCTGTAAACATTATCTTATTGAGATTGATTTGCTCTATTTTATAAATATTTTAGTTTGTTATATTAAAAAATAATTACAAATGAATAATTGTGATAACATTTTCAACCAAAAACAAATTCACACTTTAATTAGTAATAGTTTATATATATATTCAGCTTTAA

mRNA sequence

ATGGCGAATGTACGCGATGAGCATGGGAACCCGGTTCAACTTACCGACGAACGTGGGAACCCTGTTCAACTCACCGACGAATTCGGTAACCCCATGCAGCTCACCGGTGTTGTTGGCACCACACCGTCCAACCTCCATCCCACCCCACCTTCCAACCTCCACCCCACCGCCGTCACCACCACAGGAGAAAACGTTGCTCAAACGCAGCCCCCTCGAGAAATCCATGACGCCTCACCGCGTCGTTCGAGCAGTTCCAGCTCTAGCTCCCTTTAA

Coding sequence (CDS)

ATGGCGAATGTACGCGATGAGCATGGGAACCCGGTTCAACTTACCGACGAACGTGGGAACCCTGTTCAACTCACCGACGAATTCGGTAACCCCATGCAGCTCACCGGTGTTGTTGGCACCACACCGTCCAACCTCCATCCCACCCCACCTTCCAACCTCCACCCCACCGCCGTCACCACCACAGGAGAAAACGTTGCTCAAACGCAGCCCCCTCGAGAAATCCATGACGCCTCACCGCGTCGTTCGAGCAGTTCCAGCTCTAGCTCCCTTTAA

Protein sequence

MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTTTGENVAQTQPPREIHDASPRRSSSSSSSSL*

Homology

[Close]

BLAST of Cucsa.109370.1 vs. Swiss-Prot
Match: DHLE_RAPSA (Late embryogenesis abundant protein OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.6e-13
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 1


Query: 1   MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTP-------SNL--HPT--P 60
           MA+++DE GNP+ LTD  GNPVQL+DEFGNPM +TGV  + P        N+  +PT  P
Sbjct: 1   MADLKDERGNPIHLTDAYGNPVQLSDEFGNPMHITGVASSAPQYKDSVTGNIAEYPTEAP 60

Query: 61  PSNL----HPTAVTTTGENVAQTQPPREIHDA---SPRRSSSSSSSS 90
           P+ +       A T  G   ++T   +E H +     RRS SSSSSS
Sbjct: 61  PAGVAAGTGAAATTAAGVTTSETTTGQEHHGSLGEHLRRSGSSSSSS 107

[Close]

BLAST of Cucsa.109370.1 vs. Swiss-Prot
Match: DHLEA_ARATH (Probable dehydrin LEA OS=Arabidopsis thaliana GN=LEA PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-11
Identity = 51/115 (44.35%), Postives = 60/115 (52.17%), Query Frame = 1


Query: 1   MANVRDEHGNPVQLTDERGNP-VQLTDEFGNPMQLTGVVGTTPSNL---------HPTPP 60
           MA++RDE GNP+ LTD +GNP V LTDE GNPM LTGVV +TP +          HPT  
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDIAEHPTST 60

Query: 61  -SNLHP----------TAVTTTG--ENVAQTQPPREIH---DASPRRSSSSSSSS 90
               HP          TA T TG       T   ++ H   +   RRS SSSSSS
Sbjct: 61  VGETHPAAAPAGAGAATAATATGVSAGTGATTTGQQHHGSLEEHLRRSGSSSSSS 115

[Close]

BLAST of Cucsa.109370.1 vs. Swiss-Prot
Match: ECP40_DAUCA (Embryogenic cell protein 40 OS=Daucus carota GN=ECP40 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.2e-11
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLH 47
          MA++RDE GNP+QLTD+ GNPVQLTDE+GNP+ +TGV  T  +  H
Sbjct: 1  MADLRDEKGNPIQLTDQHGNPVQLTDEYGNPVHITGVATTGATTGH 46

[Close]

BLAST of Cucsa.109370.1 vs. TrEMBL
Match: A0A0A0LPB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249810 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.4e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60
          MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT
Sbjct: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60

Query: 61 TGENVAQTQPPREIHDASPRRSSSSSSSS 90
          TGENVAQTQPPREIHDASPRRSSSSSSSS
Sbjct: 61 TGENVAQTQPPREIHDASPRRSSSSSSSS 89

[Close]

BLAST of Cucsa.109370.1 vs. TrEMBL
Match: A0A059APP4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01292 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60
          MAN+RDEHGNP+QLTD+RGNPVQLTDEFG PM ++GV  TT S+   T   + H      
Sbjct: 1  MANLRDEHGNPIQLTDQRGNPVQLTDEFGRPMHISGVATTTTSSGSVTGVGDQH------ 60

Query: 61 TGENVAQTQPPREIHDASP-RRSSSSSSSSL 91
                Q Q  RE  +A   RRS SSSSSS+
Sbjct: 61 --HPHEQWQERREEGEAGELRRSGSSSSSSV 83

[Close]

BLAST of Cucsa.109370.1 vs. TrEMBL
Match: F6I0M9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g04390 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.9e-13
Identity = 50/110 (45.45%), Postives = 60/110 (54.55%), Query Frame = 1


Query: 1   MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60
           MA++RDEHGNP+QLTD+ GNPVQLTDE GNPM LTGV  T P      P  +    A+ T
Sbjct: 1   MADLRDEHGNPIQLTDQHGNPVQLTDEHGNPMHLTGVASTHPITTTTAPVHD--ADALKT 60

Query: 61  TGENVAQTQ----PPREIHDASP-----------------RRSSSSSSSS 90
           TGE+   T       + +H  +P                 R SSSSSSSS
Sbjct: 61  TGESHPPTSGHGIADQAVHGGAPVAAEPAEGGGGEVHHEKRESSSSSSSS 108

[Close]

BLAST of Cucsa.109370.1 vs. TrEMBL
Match: A0A0B0PPF3_GOSAR (Late embryogenesis abundant OS=Gossypium arboreum GN=F383_08242 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-12
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1


Query: 1   MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60
           MA++RDEHGNP+QLTDE GNPVQLTDE GNP+ +TG+     +  HPT  ++L       
Sbjct: 1   MADLRDEHGNPIQLTDEHGNPVQLTDEHGNPIYVTGI-----ATKHPTTTTSLSGLMGYG 60

Query: 61  TGENVAQTQPPREIHDASP----------------RRSSSSSSSS 90
           TG  VA  Q  +++    P                +RSSSSSSSS
Sbjct: 61  TGSAVATDQSQQQLQPPPPQQTQPLHYEVSGKEKIQRSSSSSSSS 100

[Close]

BLAST of Cucsa.109370.1 vs. TrEMBL
Match: A0A0D2VZT1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G154800 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-12
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1


Query: 1   MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60
           MA++RDEHGNP+QLTDE GNPVQLTDE GNP+ +TG+     +  HPT  ++L       
Sbjct: 20  MADLRDEHGNPIQLTDEHGNPVQLTDEHGNPIYVTGI-----ATKHPTTTTSLSGLMGYG 79

Query: 61  TGENVAQTQPPREIHDASP----------------RRSSSSSSSS 90
           TG  VA  Q  +++    P                +RSSSSSSSS
Sbjct: 80  TGSAVATDQSQQQLQPPPPQQTQPLHYEVSGKEKIQRSSSSSSSS 119

[Close]

BLAST of Cucsa.109370.1 vs. TAIR10
Match: AT2G21490.1 (AT2G21490.1 dehydrin LEA)

HSP 1 Score: 70.1 bits (170), Expect = 8.0e-13
Identity = 51/115 (44.35%), Postives = 60/115 (52.17%), Query Frame = 1


Query: 1   MANVRDEHGNPVQLTDERGNP-VQLTDEFGNPMQLTGVVGTTPSNL---------HPTPP 60
           MA++RDE GNP+ LTD +GNP V LTDE GNPM LTGVV +TP +          HPT  
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDIAEHPTST 60

Query: 61  -SNLHP----------TAVTTTG--ENVAQTQPPREIH---DASPRRSSSSSSSS 90
               HP          TA T TG       T   ++ H   +   RRS SSSSSS
Sbjct: 61  VGETHPAAAPAGAGAATAATATGVSAGTGATTTGQQHHGSLEEHLRRSGSSSSSS 115

[Close]

BLAST of Cucsa.109370.1 vs. TAIR10
Match: AT4G39130.1 (AT4G39130.1 Dehydrin family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 37/77 (48.05%), Postives = 44/77 (57.14%), Query Frame = 1


Query: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHP-TAVT 60
          MA+++DE GNP+ LTD  G P QL DEFGN M LTGV  T P +L  +  +  HP TA  
Sbjct: 1  MADLKDERGNPIYLTDAHGEPAQLMDEFGNAMHLTGVATTVP-HLKESSYTGPHPITAPV 60

Query: 61 TTGENVAQTQPPREIHD 77
          TT       QP    HD
Sbjct: 61 TTTNTPHHAQPISVSHD 76

[Close]

BLAST of Cucsa.109370.1 vs. NCBI nr
Match: gi|449464716|ref|XP_004150075.1| (PREDICTED: embryogenic cell protein 40 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 4.9e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60
          MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT
Sbjct: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60

Query: 61 TGENVAQTQPPREIHDASPRRSSSSSSSS 90
          TGENVAQTQPPREIHDASPRRSSSSSSSS
Sbjct: 61 TGENVAQTQPPREIHDASPRRSSSSSSSS 89

[Close]

BLAST of Cucsa.109370.1 vs. NCBI nr
Match: gi|659122114|ref|XP_008460975.1| (PREDICTED: late embryogenesis abundant protein-like [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-34
Identity = 79/90 (87.78%), Postives = 79/90 (87.78%), Query Frame = 1


Query: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPT-PPSNLHPTAVT 60
          MANVRDEHGNPVQLTDERGNPVQLTDEFGNPM LTGVVGTTPS L PT PPSNL P   T
Sbjct: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMHLTGVVGTTPSKLDPTAPPSNLGP---T 60

Query: 61 TTGENVAQTQPPREIHDASPRRSSSSSSSS 90
          T GENVAQTQPPRE HD SPRRSSSSSSSS
Sbjct: 61 TIGENVAQTQPPREAHDTSPRRSSSSSSSS 87

[Close]

BLAST of Cucsa.109370.1 vs. NCBI nr
Match: gi|729468134|ref|XP_010526600.1| (PREDICTED: late embryogenesis abundant protein-like [Tarenaya hassleriana])

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13
Identity = 49/95 (51.58%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTT------PSNLHPTPPSNLH 60
          MA++RDEHGNP++LTDE GNPVQLTDEFGNPM LTGV  +T      PS   P P   + 
Sbjct: 1  MADLRDEHGNPIRLTDEHGNPVQLTDEFGNPMHLTGVATSTAPHKDVPSVEAPPPAPVVE 60

Query: 61 PTAVTTTGENVAQTQPPREIHDASPRRSSSSSSSS 90
          P      G    +  P       SP  SSSSSSSS
Sbjct: 61 PQPHVGEGGGAVEQLP------RSPSSSSSSSSSS 89

[Close]

BLAST of Cucsa.109370.1 vs. NCBI nr
Match: gi|629089127|gb|KCW55380.1| (hypothetical protein EUGRSUZ_I01292 [Eucalyptus grandis])

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60
          MAN+RDEHGNP+QLTD+RGNPVQLTDEFG PM ++GV  TT S+   T   + H      
Sbjct: 1  MANLRDEHGNPIQLTDQRGNPVQLTDEFGRPMHISGVATTTTSSGSVTGVGDQH------ 60

Query: 61 TGENVAQTQPPREIHDASP-RRSSSSSSSSL 91
                Q Q  RE  +A   RRS SSSSSS+
Sbjct: 61 --HPHEQWQERREEGEAGELRRSGSSSSSSV 83

[Close]

BLAST of Cucsa.109370.1 vs. NCBI nr
Match: gi|702463258|ref|XP_010028618.1| (PREDICTED: late embryogenesis abundant protein [Eucalyptus grandis])

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-13
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 1  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60
          MAN+RDEHGNP+QLTD+RGNPVQLTDEFG PM ++GV  TT S+   T   + H      
Sbjct: 1  MANLRDEHGNPIQLTDQRGNPVQLTDEFGRPMHISGVATTTTSSGSVTGVGDQH------ 60

Query: 61 TGENVAQTQPPREIHDASPRRSSSSSSSS 90
                Q Q  RE  +A   R S SSSSS
Sbjct: 61 --HPHEQWQERREEGEAGELRRSGSSSSS 81

The following BLAST results are available for this feature:

BLAST of Cucsa.109370.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DHLE_RAPSA	7.6e-13	43.93	Late embryogenesis abundant protein OS=Raphanus sativus PE=2 SV=1	[more]
DHLEA_ARATH	1.4e-11	44.35	Probable dehydrin LEA OS=Arabidopsis thaliana GN=LEA PE=2 SV=1	[more]
ECP40_DAUCA	9.2e-11	63.04	Embryogenic cell protein 40 OS=Daucus carota GN=ECP40 PE=1 SV=1	[more]

BLAST of Cucsa.109370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPB7_CUCSA	3.4e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249810 PE=3 SV=1	[more]
A0A059APP4_EUCGR	1.8e-13	53.85	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01292 PE=4 SV=1	[more]
F6I0M9_VITVI	6.9e-13	45.45	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g04390 PE=3 SV=...	[more]
A0A0B0PPF3_GOSAR	1.5e-12	44.76	Late embryogenesis abundant OS=Gossypium arboreum GN=F383_08242 PE=3 SV=1	[more]
A0A0D2VZT1_GOSRA	1.5e-12	44.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G154800 PE=3 SV=1	[more]

BLAST of Cucsa.109370.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21490.1	8.0e-13	44.35	dehydrin LEA	[more]
AT4G39130.1	1.2e-11	48.05	Dehydrin family protein	[more]

BLAST of Cucsa.109370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464716\|ref\|XP_004150075.1\|	4.9e-44	100.00	PREDICTED: embryogenic cell protein 40 [Cucumis sativus]	[more]
gi\|659122114\|ref\|XP_008460975.1\|	2.7e-34	87.78	PREDICTED: late embryogenesis abundant protein-like [Cucumis melo]	[more]
gi\|729468134\|ref\|XP_010526600.1\|	1.5e-13	51.58	PREDICTED: late embryogenesis abundant protein-like [Tarenaya hassleriana]	[more]
gi\|629089127\|gb\|KCW55380.1\|	2.6e-13	53.85	hypothetical protein EUGRSUZ_I01292 [Eucalyptus grandis]	[more]
gi\|702463258\|ref\|XP_010028618.1\|	3.4e-13	52.81	PREDICTED: late embryogenesis abundant protein [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
biological_process	GO:0009415	response to water
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.109370	Cucsa.109370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.109370.1	Cucsa.109370.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.109370.1.CDS.2	Cucsa.109370.1.CDS.2	CDS
Cucsa.109370.1.CDS.1	Cucsa.109370.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33346	FAMILY NOT NAMED	coord: 1..89 score: 4.6