Cucsa.108460.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.108460.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING/FYVE/PHD zinc finger superfamily protein
Location	scaffold00931 : 597821 .. 602837 (-)
Sequence length	1623

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGTTTGTTGATTTGGGTTACTGTAAGTTATCAAATGTTCTTTTAGAAATGTAAATGGAATTTTAATAACACTCCATCTCTTGCTTCCTCTTTCAGAAAACAGAAGGACGAGAAAAAGAAGGCTTATACTGTTTGTTTCTTCTATCGCACAAATTCTATTCCCATTTTTGTAAGTATTCTTGTTTCCTTTTATTTTTTTCCTCTTGCATTTAATCTTAACTCACATCCTGTTCGTAAGTTTTTGTCTGCAACGTGTTTGTTCAATTGTCAATCATGGTGCTGCTTGTTTGAAGGTTACTGACATTGTATTTTTTTTTTGTGCATTTTCGTTAATTTTAAACTTTTCTTGATCTGGGTTGCCGTTTTCTTGAATTTCTTTGGTTTTGCTTTCTGGGTTTTTGTTTTTGTTTGGTTTGCCAGTGTCGGTCTCTTCCTATGTTGTGTCGTGTGTGTGTTCTTTGAGTTTTTATACCTTTTGATCTTATTGATTTGCCTTGACGTGTTGCTTGGTGTTTTTGGTGTTTTGAATGCCATTTTTTCTTTCATTCTTACATTTTTATAATGAGATGAGGTGATGCCAAAGCTTGAAGAAGCTAACACGCCTTTAATAATGTTTTTATGCTCACTCTTGAACAATGAATGATGAGTTCAAACATCTGAATCGGTTCAGAGGTTTTAGAAACTACTTTCTTTGGGGAAAAATAAGAGTTAAAGTTCGTGGCCTACAGGAACTACTTTTATTTTTTGTTTGTTTGGTTTTTTTTTTTTTTGAAGTCTTTGTCTATTCACAAGTATTTTAAATTATTAAGGGCCATTTGATCTTTTTGGTTTTTGAAATTTATGCTTGTTTCTTCCAATTATCTTACTTGTTTTTCTTTAAAATAAAACAATTGAGTTCTTTGTTAAATTCCAAAAACAAAAGCTACTTTTTTTTTATTTTGAAACTTGACTTGGGTTTTACAACTGTAATAGAAAATTGATAACAAAATAAAGGAACCTATAGGTGGAAGTTGTGTTTATAAGCTTAAATTTAAACCAAATGGTTATCAAACAAGACCTAAGTTCTCAACCTTAGGTCTTCCAAATGAGATAAGTTGTGTTTCTTCCAAATGAGATAAGTTTTCAACCTTAGGTTTGAAACTCGAACTTTGGAGGGTGCCTCCAAACATCTCCAAGGCCTTTTCATTGGAGTTAACGAACTTGTACTTAGAGCATTGATGTAACTTTTCGAGTATCAATGAAAAGTTTGTCTCTTTTTCCTAAAAAAGATAACTTAAAAGGATAACTGATATGGAATGTTTGGTTTTTCATTTGTCTGGAGTGCTATATTACATGTTCTTGCTTGTTTGTCAAACTAAGATCTATTTTATTGATTAAAGGGACTTCTTTCCTCTTGGAATTAGTTTTTTAATTGCTCCTCTATCTTAACTTAGGAAAATAGGGTGGGACATAAACATCTATAATTCTTAGTTCTTATGTTGGACCTATAGCATTATGCTCAAAATAAACTTCCCAAAAGAATAAACAGTTGCAACTTTTCTACAGCAGTTGAAGTTTCTAAGGGCCCAAAAAGGTGAAAAGCTCCAAGGGCCCAAACCTTTAGTTTCTTTACTTCCTGAGCAATTGGATGGAGTTTGCCCACTCTAAAGCCAATTTTAGAAAAACAACGATTTTAAATAAGTATTTTTCTTTTACCTAGAAATTCATCTCCAAGAATCTCATCATTCCATGGGATTTAAATTCCAGGAGTTTCAAAGTTTCTATTTTTTCTCTATTTTCTGCTAATATGTATGAATATATTATGCTGGGAAACAATCTGAATTCCAATGGATGTTGATCGCTGCAGCAACAAAACTGACCTACATAGTGGTATATTTTATTTGGCTTGTTTTATATTACTTTATTGACATTCTTATCAATATCTACTGGGTCATTGAAGAATGGGAGATCATTTTGGGCTGTTGGTGGATCAGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGAAAAAACAGAATTTGTCACCCTATGGCCTCAACAAATGCAAATGCAGATAATATGATATCTTCGTCAAACATTGATGTCGAATCTGTGTCACCTTCAAGTATTGTTCAGTGCAGAATTTGTCATGATGAGGATGATGGCTCAAAAATGGAGACACCATGCTCTTGCTGTGGCAGCTTGAAGGTTAGATTTAGTCTAGTCAATGCTAACTAGTTTTACTATGTACTCAGATAGCTATTTTTGTAATCCCTCTTTTCCAAACTGTATGGCTGGCTATAAACTGCTTTCAACAATGTTCCTGTCAACTTTTGCTGCATTCAATCTAGTATCCAAATTTATCTTCTTCTCCAAATATTTTCCCTGCATATTATAATATGCTATAAAACACTTGCTAAGTTAGGTACCCTATTAAGTATTATAAATGTACATGTTACTGGACTGAAAAGAGTAGGATCAGATTCCTGCATGGATAAAGCATCCTGTGCTATTCTTGGTTTCCTTTCCCTTTCCAAACCTTATTCCTTTCATGTGTTAATTTAGTTGGTTCACCTCGATAATTAGCTTCCAATTAGTGTTGATAATTGCAGTATGCTCATCGCAAGTGCATCCAGCGGTGGTGCAATGAGAAAGGCGATACAATCTGTGAGATTTGCCACCAGGTCTGTCATTTTTATTTTTTTGTTTTTAATTGTCGTTATTGCATGGCTAAATTTACGTTAGTAAGGAGTATTTTTTCTTATACTGTAGGACTTTAAGCCAGGGTATACCTCACCTCCCCCTGTATTTTATTATGGAGATATTAATTCACCAATACATTTCAGGTTATCCATTTACCACTCATTCATAATGCATTTCATTTCACATGCAATTTCTCTAGTATATGGTATTATTCAAATCTCGTTCATTCATTTTATATAACAGTGCTATCATTGAATTTTGTGGTCTTAGGGGAAGTTGGGAGATGTCTAGACTGAACCTGCATGTACCTGCAGGTATGCCTGACCACGAGTATCTTGATTCTGACTTTGATGATTTTTTCGCTCCCTCTCCAAGAAGCATATTGTGCTGCCGTGTGGTTGCAGTAATTGTATTCCCTACCTCTTCATTTTATTTCATTTCAGTTTCCTTATTTACAAGTTTAAGCGGCTTGATAATTGGCTTTGGTTTCTCCAGAAGCAGATTGAAAAGTATTAAGGTTTTTTATTTTTGCTAATTGAAAAGTATTATGATGAATTTTTGTATAGAAATTAAATTTTATTCTTTGAACTTTCTATAAAGACCAAATTTTTTAATGAATTATTGAGATACATTTTTTTTCATTACCTGAATATGTCTGCATGGACAAGTGTTTTTCTCATTACCTGAATATGTGTGGGGTCGTCAAATATTAATGAAAATAAAGTACATAGTATTTATTCTAAGTTTAGGAGATGCAATATAATATTAAAGTTGATGGATAGAGAAATATAACATTTTGAAGTAAGGATGAGAATGAAACGAGAATCAAATCACATAACTAAATAGGATTTAAACTTGTGGTCTCCTTGCTCATATTTGTACCATTAAGACAATTGGATTGACCAACAATCACCTGTTTGAAACTTCTAATCATATCTGTATATATGTAGTTTATTGCTCTTCTCGTTTTACGCCATACTCTACCAATTGTAATTAGTGGTGCTGGAGGGTATTCATGGACATTGTTAATGGTAAGATTGTTTCTCGGTTTTCCTTCATCTACCTTTTTATCCCTTGGCCCTTTTCTATTGTTGAGACCAGTGAAGAACCAAAAGTTCGTGTGCTGTATATTTTCAGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTACCAATATACGTCATGGTTAAGGCATTTACTTACATTCAACGACGGCATCGTTATCAGGTTAGTGATGCAGTCTATTTCTAGATTTGTTTTGAACAACATTTCATCGTATGAACTGTGCGGATTTTCAATGGGGTTCATGCAAATTAGGGTAGATATGAATTTTGTTGGCCATTGTGTTAAACCTTGTTCTTTTGTTTAACCATGTTTCTAATTATAATCACTATATTTTGGTTTAATATAGTTTTAGTGCATATAAGCTACCCTGACATGATCATAGTCTACTTGAAATAGTTTAAGTTTAACTAGTTAAGACATATGTCATCGACTAGAAGTCAGGGTTCAAATTGTCTCTTCCAAATAAATAAAAACTGATCACCCATGATTTGGAAAAGAAATATCATGGTAAGCACCTGAGTCCATGAGTATTATACAGCAAAAAGAAAAGAGGTTAGAATAAATGCCTTTTTAGTTCCTTTTGGTTGTGAAGGTTCAAAACCTTAACAAGTAGCCTTGAAGTTTTTGAAATGCTTCAAAATACCAAACTTTCAAGGAAAAATCAATGATTGGCAAAAAAGTGTCAGTGTGCCACTGGGTCTGTGTACTTTTTTTGGTACAACTTTTGTGAAAAGTAAACGATTATCAAAAAAGAATAGTAATCAAAAGAAAAGAGTGTCACTGGGTCCATCAATTGTACTTTTTTTCACTCTTCAATAATAAGCTTTATGTTTCTTAAGAGGAAAAGAAGTTATGACTGTACTGTCCTATATCAGAACACCAACCATGATAAACATATGGAGAGTGCGTATCTCTGAAAATTGGTTCTAGTTATTTGTTTACATATATCGAATACTACATTTGAACCTTCTCATATTGTTTTGTTAGGCTCCCCGTCTTCAACTCACAACATTAGGTGACAATAGTGAATCGACAAACCATTCTCAATCGCACTTAATCCACTTGAGATAACAGTACATTGGCCTGGTCCCTCGTATAGTGGAAACGATGAGATGGAAAATGGCTGGATAAATTGCGTATGTCACCAAACGCCTTTCACTGTGAGGAAGTTGTGAGTGACAAGCTGTTTATGGTTCTTGCAGCAAGACGATCACGACCAACCGATTATTTTCTCAAATGAAGTTCACATCTGTGCAGAAGCAG

mRNA sequence

TGTTGTTTGTTGATTTGGGTTACTAAAACAGAAGGACGAGAAAAAGAAGGCTTATACTGTTTGTTTCTTCTATCGCACAAATTCTATTCCCATTTTTAATGGGAGATCATTTTGGGCTGTTGGTGGATCAGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGAAAAAACAGAATTTGTCACCCTATGGCCTCAACAAATGCAAATGCAGATAATATGATATCTTCGTCAAACATTGATGTCGAATCTGTGTCACCTTCAAGTATTGTTCAGTGCAGAATTTGTCATGATGAGGATGATGGCTCAAAAATGGAGACACCATGCTCTTGCTGTGGCAGCTTGAAGTATGCTCATCGCAAGTGCATCCAGCGGTGGTGCAATGAGAAAGGCGATACAATCTGTGAGATTTGCCACCAGGACTTTAAGCCAGGGTATACCTCACCTCCCCCTGTATTTTATTATGGAGATATTAATTCACCAATACATTTCAGGGGAAGTTGGGAGATGTCTAGACTGAACCTGCATGTACCTGCAGGTATGCCTGACCACGAGTATCTTGATTCTGACTTTGATGATTTTTTCGCTCCCTCTCCAAGAAGCATATTGTGCTGCCGTGTGGTTGCAGTAATTGTATTCCCTACCTCTTCATTTTATTTCATTTCAGTTTCCTTATTTACAAGTTTAAGCGGCTTGATAATTGGCTTTGGTTTCTCCAGAAGCAGATTGAAAAGTATTAAGGTTTTTTATTTTTGCTAATTGAAAAGTATTATGATGAATTTTTGTATAGAAATTAAATTTTATTCTTTGAACTTTCTATAAAGACCAAATTTTTTAATGAATTATTGAGATACATTTTTTTTCATTACCTGAATATGTCTGCATGGACAAGTGTTTTTCTCATTACCTGAATATGTGTGGGGTCGTCAAATATTAATGAAAATAAAGTACATAGTATTTATTCTAAGTTTAGGAGATGCAATATAATATTAAAGTTGATGGATAGAGAAATATAACATTTTGAAGTAAGGATGAGAATGAAACGAGAATCAAATCACATAACTAAATAGGATTTAAACTTGTGGTCTCCTTGCTCATATTTGTACCATTAAGACAATTGGATTGACCAACAATCACCTGTTTGAAACTTCTAATCATATCTGTATATATGTAGTTTATTGCTCTTCTCGTTTTACGCCATACTCTACCAATTGTAATTAGTGGTGCTGGAGGGTATTCATGGACATTGTTAATGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTACCAATATACGTCATGGTTAAGGCATTTACTTACATTCAACGACGGCATCGTTATCAGGCTCCCCGTCTTCAACTCACAACATTAGGTGACAATAGTGAATCGACAAACCATTCTCAATCGCACTTAATCCACTTGAGATAACAGTACATTGGCCTGGTCCCTCGTATAGTGGAAACGATGAGATGGAAAATGGCTGGATAAATTGCGTATGTCACCAAACGCCTTTCACTGTGAGGAAGTTGTGAGTGACAAGCTGTTTATGGTTCTTGCAGCAAGACGATCACGACCAACCGATTATTTTCTCAAATGAAGTTCACATCTGTGCAGAAGCAG

Coding sequence (CDS)

ATGGGAGATCATTTTGGGCTGTTGGTGGATCAGTTGCTCACTGAATCAAACCTTGAAGCTACTATTGAGAGAAAAAACAGAATTTGTCACCCTATGGCCTCAACAAATGCAAATGCAGATAATATGATATCTTCGTCAAACATTGATGTCGAATCTGTGTCACCTTCAAGTATTGTTCAGTGCAGAATTTGTCATGATGAGGATGATGGCTCAAAAATGGAGACACCATGCTCTTGCTGTGGCAGCTTGAAGTATGCTCATCGCAAGTGCATCCAGCGGTGGTGCAATGAGAAAGGCGATACAATCTGTGAGATTTGCCACCAGGACTTTAAGCCAGGGTATACCTCACCTCCCCCTGTATTTTATTATGGAGATATTAATTCACCAATACATTTCAGGGGAAGTTGGGAGATGTCTAGACTGAACCTGCATGTACCTGCAGGTATGCCTGACCACGAGTATCTTGATTCTGACTTTGATGATTTTTTCGCTCCCTCTCCAAGAAGCATATTGTGCTGCCGTGTGGTTGCAGTAATTGTATTCCCTACCTCTTCATTTTATTTCATTTCAGTTTCCTTATTTACAAGTTTAAGCGGCTTGATAATTGGCTTTGGTTTCTCCAGAAGCAGATTGAAAAGTATTAAGGTTTTTTATTTTTGCTAA

Protein sequence

MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPVFYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVIVFPTSSFYFISVSLFTSLSGLIIGFGFSRSRLKSIKVFYFC*

Homology

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BLAST of Cucsa.108460.2 vs. Swiss-Prot
Match: MARH2_RAT (E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 1


Query: 54  SPSSIVQCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDF 111
           +PS    CRICH+  +G  + +PC C G+L   H+ C+++W +    + CE+CH +F
Sbjct: 57  TPSDCPFCRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Cucsa.108460.2 vs. Swiss-Prot
Match: MARH2_XENLA (E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 19/50 (38.00%), Postives = 33/50 (66.00%), Query Frame = 1


Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDF 111
           CRICH+  +G ++ +PC C G+L   H+ C+++W +    + CE+CH +F
Sbjct: 64  CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Cucsa.108460.2 vs. Swiss-Prot
Match: MARH2_XENTR (E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 19/50 (38.00%), Postives = 33/50 (66.00%), Query Frame = 1


Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDF 111
           CRICH+  +G ++ +PC C G+L   H+ C+++W +    + CE+CH +F
Sbjct: 64  CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Cucsa.108460.2 vs. Swiss-Prot
Match: MARH2_MOUSE (E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 21/57 (36.84%), Postives = 34/57 (59.65%), Query Frame = 1


Query: 54  SPSSIVQCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDF 111
           S S    CRICH+  +G  + +PC C G+L   H+ C+++W +    + CE+CH +F
Sbjct: 57  SQSDCPFCRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Cucsa.108460.2 vs. Swiss-Prot
Match: MARH3_BOVIN (E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.8e-07
Identity = 19/50 (38.00%), Postives = 28/50 (56.00%), Query Frame = 1


Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDF 111
           CRICH+      + +PC C G+L   HR C++ W +    + CE+CH  F
Sbjct: 71  CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120

[Close]

BLAST of Cucsa.108460.2 vs. TrEMBL
Match: A0A0A0LBM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186720 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.1e-104
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60
           MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ
Sbjct: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60

Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120
           CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV
Sbjct: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120

Query: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVI 180
           FYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVI
Sbjct: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVI 179

[Close]

BLAST of Cucsa.108460.2 vs. TrEMBL
Match: B9T315_RICCO (Membrane associated ring finger 1,8, putative (Fragment) OS=Ricinus communis GN=RCOM_0325900 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 113/185 (61.08%), Postives = 141/185 (76.22%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKN--RICHPMASTNANADNMISSSNIDVESVSPSSI 60
           MGDHF LLVD+LLTES LEA IE KN  +   P AS +   D      ++D  S SP  +
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESKNHWQQAIPPASQDNTTDCSTHRMDVDFRS-SPEKL 60

Query: 61  VQCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPP 120
           V+CRICHDED+ + ME PCSCCGSLKYAHRKC+QRWCNEKGDT+CEICHQ FKPGYT+PP
Sbjct: 61  VECRICHDEDEDTNMEVPCSCCGSLKYAHRKCVQRWCNEKGDTLCEICHQQFKPGYTAPP 120

Query: 121 PVFYYGDINSPIHFRGSWEMSRLNLHVPAGM----PDHEYLDSDFDDFFAPSPRSILCCR 180
           P+F+YG I  P++FRG+WE+SR +LH P  +     D E++DSDFDD+ APSPRS++CCR
Sbjct: 121 PLFHYGGI--PMNFRGNWEVSRRDLHNPGLIAMVTADREFVDSDFDDYLAPSPRSLICCR 180

[Close]

BLAST of Cucsa.108460.2 vs. TrEMBL
Match: M5WTM7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010144mg PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 7.4e-61
Identity = 122/210 (58.10%), Postives = 149/210 (70.95%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60
           MGDHF L VD+L+TES LEA IE   ++ HP  +  A+ D M SS  IDV   S S  VQ
Sbjct: 1   MGDHFVLFVDRLITESTLEAVIESTYQLQHP--TLTASQDTMDSSHKIDVNGSSSSKFVQ 60

Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120
           CRICHDEDD S METPCSCCGSLKYAHRKC+QRWCNEKGDTICEICHQ F P YT+PPP+
Sbjct: 61  CRICHDEDDDSNMETPCSCCGSLKYAHRKCVQRWCNEKGDTICEICHQQFTPDYTAPPPL 120

Query: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGM----PDHEYLDSDFDD-FFAPSPRSILCCRV 180
           F+Y  I  P++FRG+WE+SR +L  P  +     DHEY+++DFDD + APS RS++CCRV
Sbjct: 121 FHYSGI--PMNFRGNWEISRRDLQNPQFIAMVTADHEYMNTDFDDEYSAPSSRSLICCRV 180

Query: 181 VAVIVFPTSSFYFISVSLFTSLSGLIIGFG 206
           VA+I       + + + L  +L  LI G G
Sbjct: 181 VAII-------FMVLLVLRHTLPFLISGAG 199

[Close]

BLAST of Cucsa.108460.2 vs. TrEMBL
Match: A0A061EGA0_THECC (RING/FYVE/PHD zinc finger superfamily protein OS=Theobroma cacao GN=TCM_019300 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 116/187 (62.03%), Postives = 146/187 (78.07%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMI--SSSNIDVESV--SPS 60
           MGDHF LLVD+LLTES LEA IE KN+    M+S  A+ D+MI  SS  +D E+V  SPS
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESKNQSQQGMSS--ASKDDMIEFSSHRMD-ENVGSSPS 60

Query: 61  SIVQCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTS 120
            +V+CRICHDED+   ME PCSC GSLKYAHRKC+QRWCNEKGDTICEICHQ F+PGYT+
Sbjct: 61  KLVECRICHDEDEDLNMEIPCSCRGSLKYAHRKCVQRWCNEKGDTICEICHQQFRPGYTA 120

Query: 121 PPPVFYYGDINSPIHFRGSWEMSRLNLHVPAGM----PDHEYLDSDFDDFFAPSPRSILC 180
           PPP+F+YG +  P++FRG+WE+SR +L  P  +     D ++L+SDFDD+ APS RS++C
Sbjct: 121 PPPLFHYGGV--PMNFRGNWEISRRDLPAPRFITMVTTDRDFLESDFDDYSAPSSRSLIC 180

[Close]

BLAST of Cucsa.108460.2 vs. TrEMBL
Match: B9H350_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09240g PE=4 SV=2)

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 115/210 (54.76%), Postives = 148/210 (70.48%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVS-PSSIV 60
           MGDHF  LVD+LLTES LEA IE +NR+   MAS +       S   +D+E  S     V
Sbjct: 1   MGDHFVFLVDRLLTESTLEAAIESQNRLRQTMASASKENTKEFSPHWMDLELTSLAGKSV 60

Query: 61  QCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPP 120
           +CRICH+E+D   ME PCSC GSLKYAHRKC+QRWCNEKG+TICEICHQ F+PGYT+PPP
Sbjct: 61  ECRICHEEEDDMNMEMPCSCRGSLKYAHRKCVQRWCNEKGNTICEICHQQFEPGYTAPPP 120

Query: 121 VFYYGDINSPIHFRGSWEMSRLNLHVPAGM----PDHEYLDSDFDDFFAPSPRSILCCRV 180
           +F YG I  P++FRG+WE+ R +LH P  +     DHE+LDSDFD++ APSPRS++CCR+
Sbjct: 121 LFCYGAI--PMNFRGNWEIPRRDLHNPPSIAMVTTDHEFLDSDFDEYSAPSPRSVMCCRI 180

Query: 181 VAVIVFPTSSFYFISVSLFTSLSGLIIGFG 206
           +A+I       + + + L  +L+ LI G G
Sbjct: 181 IAII-------FMVLLVLRHTLAILISGAG 201

[Close]

BLAST of Cucsa.108460.2 vs. TAIR10
Match: AT2G01275.1 (AT2G01275.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-44
Identity = 84/180 (46.67%), Postives = 117/180 (65.00%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60
           MGDHF LLVD+L+TES +EA I+ +N++    A+       ++    +++      S+ +
Sbjct: 1   MGDHFVLLVDRLITESTIEAAIQSRNQMLQ--ANIPVEECTILDDKTLEMLRNGDLSMAE 60

Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120
           CRICHDED  S METPCSC GS+KYAHR+C+QRWCNEKGDT CEICHQ+FKP YT+PPP+
Sbjct: 61  CRICHDEDLDSNMETPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICHQEFKPDYTAPPPL 120

Query: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGMP-DHEYLDSDFDDFFAPSPRSILCCRVVAVI 180
              G +  P+HFRG+W +S+        +P D  ++D  +      S  S +CCR + +I
Sbjct: 121 LELGHV--PLHFRGNWGISQREHRFITVVPADSTFIDQPYP---LSSTTSFICCRSLVLI 173

[Close]

BLAST of Cucsa.108460.2 vs. TAIR10
Match: AT5G38070.1 (AT5G38070.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-38
Identity = 79/179 (44.13%), Postives = 115/179 (64.25%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60
           MGDH  L+VD+L ++S L  T+ R +    P A +  N D +  S +   + +  S  VQ
Sbjct: 1   MGDHLVLVVDRLSSDSGL-GTVNRAD----PKADS-VNEDGVSESISAGAD-LCESKFVQ 60

Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120
           CRICHDED+ + M+TPCSC G+LK+AH  C+QRWCNEKGDT+CEIC Q +KPGYT+P  +
Sbjct: 61  CRICHDEDEDTNMDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYKPGYTAPRQL 120

Query: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVI 180
           F+Y  I+  ++F   W +  L+L  P  +   +  D D D +   SP S++CCR++A++
Sbjct: 121 FHYTGIS--MNFGSDWGIEGLDLRNPYFLTWGD-ADDDHDLYSFHSPTSLICCRLIALL 169

[Close]

BLAST of Cucsa.108460.2 vs. TAIR10
Match: AT2G02960.5 (AT2G02960.5 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1


Query: 40  DNMISSSNIDVESVSPSSIV--QCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNE 99
           D  +  S+ D +  +   IV  +CRIC DE     +E+PC+C GSLKYAHRKC+QRWCNE
Sbjct: 20  DKALDISDDDHDDENEPLIVSGECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNE 79

Query: 100 KGDTICEICHQDFKPGYTSPPPVFYYGDINSPIHFRGSWEMSRLNLHVP----AGMPDHE 159
           KG+ ICEICHQ ++PGYT+PPP     +  + I   G W +S L++H P        +  
Sbjct: 80  KGNIICEICHQPYQPGYTAPPPPLQPEE--TTIDIGGGWTISGLDVHDPRLLAIAEAERR 139

Query: 160 YLDSDFDDFFAPSPRSILCCRVVAVIV 181
           YL+S++ ++ A S      CR  A+I+
Sbjct: 140 YLESEYVEYTASSASGAAFCRSAALIL 164

[Close]

BLAST of Cucsa.108460.2 vs. TAIR10
Match: AT1G14260.1 (AT1G14260.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-29
Identity = 68/154 (44.16%), Postives = 90/154 (58.44%), Query Frame = 1


Query: 35  TNANADNMISSSNIDV----ESVSPSSIVQCRICHDEDDGSKMETPCSCCGSLKYAHRKC 94
           T + ADN I   + D     E  S  S  +CRIC DE D   +E+PC+C GSLKYAHRKC
Sbjct: 27  TESPADNAIDIYDGDTTENEEEDSLISSAECRICQDECDIKNLESPCACNGSLKYAHRKC 86

Query: 95  IQRWCNEKGDTICEICHQDFKPGYTSPPPVFYYGDINSPIHFRGSWEMSRLNLHVP---- 154
           +QRWCNEKG+TICEICHQ ++ GYTSPPP     +  + I   G W +S L+L  P    
Sbjct: 87  VQRWCNEKGNTICEICHQPYQAGYTSPPPPPQSEE--TTIDIGGGWRISGLDLDDPRLLA 146

Query: 155 AGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVIV 181
               + + L+S++DD+ A         R  A+I+
Sbjct: 147 IAEAERQILESEYDDYTASDTSGAAFFRSAALIL 178

[Close]

BLAST of Cucsa.108460.2 vs. TAIR10
Match: AT3G47550.3 (AT3G47550.3 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28
Identity = 71/196 (36.22%), Postives = 103/196 (52.55%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVE------SVS 60
           M DH  L  D+L+T  +L++    K+      +S      ++ SSS  + E      +V+
Sbjct: 1   MADHLSLCTDRLITSESLDS---EKDSDSSGESSYRPQGTDLASSSVNETEVPREYYAVA 60

Query: 61  PSS-----IVQCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQD 120
                    V+CRIC +ED    +E PC+C GSLKYAHRKC+QRWCNEKGD  CEICHQ 
Sbjct: 61  DEEEPLLQSVECRICQEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDITCEICHQP 120

Query: 121 FKPGYTSPPPVFYYGDINSPIHFRGSWEMS-RLNLHVP----AGMPDHEYLDSDFDDFFA 180
           ++ GYT+PPP        + IH    WE    L+L  P        +  +L++D+D++  
Sbjct: 121 YQHGYTAPPPP---PPDETIIHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSE 180

[Close]

BLAST of Cucsa.108460.2 vs. NCBI nr
Match: gi|778679853|ref|XP_004140823.2| (PREDICTED: E3 ubiquitin-protein ligase MARCH2-like [Cucumis sativus])

HSP 1 Score: 387.5 bits (994), Expect = 1.6e-104
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60
           MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ
Sbjct: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60

Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120
           CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV
Sbjct: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120

Query: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVI 180
           FYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVI
Sbjct: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGMPDHEYLDSDFDDFFAPSPRSILCCRVVAVI 179

[Close]

BLAST of Cucsa.108460.2 vs. NCBI nr
Match: gi|1009128326|ref|XP_015881170.1| (PREDICTED: uncharacterized protein LOC107417121 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 249.2 bits (635), Expect = 6.7e-63
Identity = 116/183 (63.39%), Postives = 143/183 (78.14%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60
           MGDHF LLVD+LLTES LEA IE K+    P  S +   DNMISS  IDV   SP  +V+
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESKSWSQQPTISKSQ--DNMISSHKIDVNMRSPCKLVE 60

Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120
           CRICHDED+ S METPCSCCGSLKYAHRKC+QRWCNEKGDTICEIC Q F+PGYT+PPP+
Sbjct: 61  CRICHDEDEASNMETPCSCCGSLKYAHRKCVQRWCNEKGDTICEICRQQFRPGYTAPPPL 120

Query: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGM----PDHEYLDSDFDDFFAPSPRSILCCRVV 180
           F+YG I  P++FRG+WE+SR +LH P  +     + +Y+D+DFD++ APS RS++CCR+V
Sbjct: 121 FHYGGI--PMNFRGNWEVSRRDLHNPGFIAMVSAERDYMDTDFDEYAAPSSRSLICCRIV 179

[Close]

BLAST of Cucsa.108460.2 vs. NCBI nr
Match: gi|1009128336|ref|XP_015881176.1| (PREDICTED: uncharacterized protein LOC107417121 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 249.2 bits (635), Expect = 6.7e-63
Identity = 116/183 (63.39%), Postives = 143/183 (78.14%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60
           MGDHF LLVD+LLTES LEA IE K+    P  S +   DNMISS  IDV   SP  +V+
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESKSWSQQPTISKSQ--DNMISSHKIDVNMRSPCKLVE 60

Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120
           CRICHDED+ S METPCSCCGSLKYAHRKC+QRWCNEKGDTICEIC Q F+PGYT+PPP+
Sbjct: 61  CRICHDEDEASNMETPCSCCGSLKYAHRKCVQRWCNEKGDTICEICRQQFRPGYTAPPPL 120

Query: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGM----PDHEYLDSDFDDFFAPSPRSILCCRVV 180
           F+YG I  P++FRG+WE+SR +LH P  +     + +Y+D+DFD++ APS RS++CCR+V
Sbjct: 121 FHYGGI--PMNFRGNWEVSRRDLHNPGFIAMVSAERDYMDTDFDEYAAPSSRSLICCRIV 179

[Close]

BLAST of Cucsa.108460.2 vs. NCBI nr
Match: gi|223527625|gb|EEF29737.1| (membrane associated ring finger 1,8, putative, partial [Ricinus communis])

HSP 1 Score: 243.8 bits (621), Expect = 2.8e-61
Identity = 113/185 (61.08%), Postives = 141/185 (76.22%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKN--RICHPMASTNANADNMISSSNIDVESVSPSSI 60
           MGDHF LLVD+LLTES LEA IE KN  +   P AS +   D      ++D  S SP  +
Sbjct: 1   MGDHFVLLVDRLLTESTLEAAIESKNHWQQAIPPASQDNTTDCSTHRMDVDFRS-SPEKL 60

Query: 61  VQCRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPP 120
           V+CRICHDED+ + ME PCSCCGSLKYAHRKC+QRWCNEKGDT+CEICHQ FKPGYT+PP
Sbjct: 61  VECRICHDEDEDTNMEVPCSCCGSLKYAHRKCVQRWCNEKGDTLCEICHQQFKPGYTAPP 120

Query: 121 PVFYYGDINSPIHFRGSWEMSRLNLHVPAGM----PDHEYLDSDFDDFFAPSPRSILCCR 180
           P+F+YG I  P++FRG+WE+SR +LH P  +     D E++DSDFDD+ APSPRS++CCR
Sbjct: 121 PLFHYGGI--PMNFRGNWEVSRRDLHNPGLIAMVTADREFVDSDFDDYLAPSPRSLICCR 180

[Close]

BLAST of Cucsa.108460.2 vs. NCBI nr
Match: gi|645246371|ref|XP_008229323.1| (PREDICTED: uncharacterized protein LOC103328694 [Prunus mume])

HSP 1 Score: 243.8 bits (621), Expect = 2.8e-61
Identity = 123/210 (58.57%), Postives = 149/210 (70.95%), Query Frame = 1


Query: 1   MGDHFGLLVDQLLTESNLEATIERKNRICHPMASTNANADNMISSSNIDVESVSPSSIVQ 60
           MGDHF L VD+L+TES LEA IE   ++ HP  +  A+ D M SS  IDV   S S  VQ
Sbjct: 1   MGDHFVLFVDRLITESTLEAVIESTYQLQHP--TLTASQDTMDSSHKIDVNGSSSSKFVQ 60

Query: 61  CRICHDEDDGSKMETPCSCCGSLKYAHRKCIQRWCNEKGDTICEICHQDFKPGYTSPPPV 120
           CRICHDEDD S METPCSCCGSLKYAHRKC+QRWCNEKGDTICEICHQ F P YT+PPP+
Sbjct: 61  CRICHDEDDDSNMETPCSCCGSLKYAHRKCVQRWCNEKGDTICEICHQQFTPDYTAPPPL 120

Query: 121 FYYGDINSPIHFRGSWEMSRLNLHVPAGM----PDHEYLDSDFDD-FFAPSPRSILCCRV 180
           FYY  I  P++FRG+WE+SR +L  P  +     DHEY+++DFDD + APS RS++CCRV
Sbjct: 121 FYYSGI--PMNFRGNWEISRRDLQNPQFIAMVTADHEYMNTDFDDEYSAPSSRSLICCRV 180

Query: 181 VAVIVFPTSSFYFISVSLFTSLSGLIIGFG 206
           VA+I       + + + L  +L  LI G G
Sbjct: 181 VAII-------FMVLLVLRHTLPFLISGAG 199

The following BLAST results are available for this feature:

BLAST of Cucsa.108460.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MARH2_RAT	4.2e-09	36.84	E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2 PE=1 SV=1	[more]
MARH2_XENLA	1.2e-08	38.00	E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2 SV=1	[more]
MARH2_XENTR	1.2e-08	38.00	E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2 PE=2 SV=1	[more]
MARH2_MOUSE	1.6e-08	36.84	E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2 SV=1	[more]
MARH3_BOVIN	8.8e-07	38.00	E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2 SV=1	[more]

BLAST of Cucsa.108460.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBM8_CUCSA	1.1e-104	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186720 PE=4 SV=1	[more]
B9T315_RICCO	1.9e-61	61.08	Membrane associated ring finger 1,8, putative (Fragment) OS=Ricinus communis GN=...	[more]
M5WTM7_PRUPE	7.4e-61	58.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010144mg PE=4 SV=1	[more]
A0A061EGA0_THECC	1.5e-58	62.03	RING/FYVE/PHD zinc finger superfamily protein OS=Theobroma cacao GN=TCM_019300 P...	[more]
B9H350_POPTR	1.5e-58	54.76	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09240g PE=4 SV=2	[more]

BLAST of Cucsa.108460.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01275.1	1.5e-44	46.67	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G38070.1	1.6e-38	44.13	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G02960.5	3.5e-30	42.86	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT1G14260.1	1.3e-29	44.16	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT3G47550.3	1.5e-28	36.22	RING/FYVE/PHD zinc finger superfamily protein	[more]

BLAST of Cucsa.108460.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679853\|ref\|XP_004140823.2\|	1.6e-104	100.00	PREDICTED: E3 ubiquitin-protein ligase MARCH2-like [Cucumis sativus]	[more]
gi\|1009128326\|ref\|XP_015881170.1\|	6.7e-63	63.39	PREDICTED: uncharacterized protein LOC107417121 isoform X1 [Ziziphus jujuba]	[more]
gi\|1009128336\|ref\|XP_015881176.1\|	6.7e-63	63.39	PREDICTED: uncharacterized protein LOC107417121 isoform X2 [Ziziphus jujuba]	[more]
gi\|223527625\|gb\|EEF29737.1\|	2.8e-61	61.08	membrane associated ring finger 1,8, putative, partial [Ricinus communis]	[more]
gi\|645246371\|ref\|XP_008229323.1\|	2.8e-61	58.57	PREDICTED: uncharacterized protein LOC103328694 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011016	Znf_RING-CH
IPR013083	Znf_RING/FYVE/PHD
IPR022143	DUF3675

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.108460	Cucsa.108460	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.108460.2	Cucsa.108460.2-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.108460.2.three_prime_UTR.3	Cucsa.108460.2.three_prime_UTR.3	three_prime_UTR
Cucsa.108460.2.three_prime_UTR.2	Cucsa.108460.2.three_prime_UTR.2	three_prime_UTR
Cucsa.108460.2.three_prime_UTR.1	Cucsa.108460.2.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.108460.2.CDS.4	Cucsa.108460.2.CDS.4	CDS
Cucsa.108460.2.CDS.3	Cucsa.108460.2.CDS.3	CDS
Cucsa.108460.2.CDS.2	Cucsa.108460.2.CDS.2	CDS
Cucsa.108460.2.CDS.1	Cucsa.108460.2.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.108460.2.five_prime_UTR.3	Cucsa.108460.2.five_prime_UTR.3	five_prime_UTR
Cucsa.108460.2.five_prime_UTR.2	Cucsa.108460.2.five_prime_UTR.2	five_prime_UTR
Cucsa.108460.2.five_prime_UTR.1	Cucsa.108460.2.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 61..106 score: 6.4
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 60..107 score: 6.0
IPR011016	Zinc finger, RING-CH-type	PROFILE	PS51292	ZF_RING_CH	coord: 53..113 score: 2
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 59..111 score: 1.5
IPR022143	Protein of unknown function DUF3675	PFAM	PF12428	DUF3675	coord: 112..180 score: 3.9
None	No IPR available	PANTHER	PTHR23012:SF89	SUBFAMILY NOT NAMED	coord: 31..179 score: 1.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 57..111 score: 1.13