Cucsa.105980.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGCGCTCGGCGTGCTAAAGTTAGAGCTTCTAGTTCGAGtCTGCCTATTGCCATTTCACCGTCTAAGGAGGAAGAAAAGGAATCGAGGTTTCTTCCGGTGCTACTCGTCGGCCAAATTTTGGTCAGGATATTGTTCGACGGTTAAATTATTCTGcTGCAGGTAGGTTTTCTTCAGCTTtaTTTTTATTTCTGTAATTTTTTtCCATTCGAATTGCTCTTCGATTTCGACTTTtcAAATCATAGATGACTGATTGATAAACCCTAGCGGCGGCACTTTTATACTTCATCGCAATGTCTCTAGTTTTTCGGTGTTTCTGCTTTCTTTCTTCACCTCTATTCGCTAGGCTCCTAACATCTCTCTCTCGGTCTGgATATCAGCTATGGTTTCATATACCTCGTGGTTGTGCTTACGCTATGATGTTTGTAGGTTCTGACAGTGGTTATTTCTTTTtATGTATCGATTTCTTGATGTTATTTTTCAGATTTGAGGCcAAGTTTCTTGTCTATTTGATATTCGGTTTTCAATTCATtCATACAATGTTGTTTACTTTGATTATTTGTATGTCATTTGGTCAGTGGATTCATGTGTGTATACATATTTGGTGTTATGTTTCACTGAAAGCTAGATAGTCAATTGCTAATGTCGCTGGCTAAAAATTTCTCTAATTAATAGTTCTTTAGCTGTAAAATATTTCTACATTTTCATTTCGTcGTTGATTTACCTGCCTTAGAACTGAGAGGaTGcATGCTATTGACATGAAGCTGTAAGTGTGTGAGCGTGCATGCAAGTTGTGGTGACTGAGATTTAGCTgTTTTGTCACcACAGTCGAACAAATTTACTTTGATCTTATTTATTGAATGGGTTGCTTTGGAAATATGTTGCCTATAAAGTCTATAATTTTAGTTGAACTCAAAGCTGTATGCCAGTTTTGGTCTAGCAATGAATGGATCTGATCTCGGATCACAGATAACAAATATATTTTGGGCTGTCAAGGTGATGGAACAATTATTGATGAAATGAACTGAAACAAATGCATGATGACTAtCcTTTTTTTTtCTTTTtCTTTTTCTTTTGAGATACTGACTATTTTTTtAACTTTTGGTTGGTTTAACAATTCTTTTTCCATATAGTTCATCGATGAGTTCTCTGTTTTtATTTTTTtAGTGAAATTCTAAACTGTTATTTTCCTTGAAAAAATTGACATGGAAAAACTGGTTCTTGGTGATTGCGATAGACATTATTAGGCGGTATATGAGAAAGAGAAAAAGAGAGAGCAAGTAAAGCATTATAGAATTATGTGGACAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTGTTATtTGAATATACTTGTTTCTTATAgAAtAAAAaGAATTATGTGGGCCCCTTTATAAGATTCAGTTTGTTATGAATTAGGCTTTTTTTAAGTCTGGGGAGGGGAGTCTTGTTCATCTTTTTGCACTGTATCGAGTGTAGCTATCAGAGCATTTGAAGGGAGGTAGCCTTGGCGTCCTTGGCATTTTGaCCTAAAGGGTAAATAGATAATCCCAGTTCTATCAGATTGGTTCTGTTACAATTGTCTAAGAAATACCATTCTGTAGGGAAAAAAAAaCCTTCTGTATCCAAGTTGCTGCATTATACAGCATTATAGGTTGGTTGGAATTtCTTTTATTAGCCAGTTTCTAACTAcTGCTAGATGCAGGTATTCTTTTCTTAGTTTGAATCTTTACTTAGGTTTTGGGGGATTGATAGTCTTATACTGTTTTTTGTAGAGGTACAGCCAGAGAGCCCATCTTTGGAATTTCCTTTGAATTAGGgTAAATGATAGTCCATTTGGAACTTTGTTCCCTCGTTGAGTTTAGAGAGGAAGCCCAGTTCTTCCTTATCAGAGAAGGCTAATTTTTCCTAGTTTGGTGTATTTGTAGGGTAGGATACGATGGCTCGAAATGAGGAGAAAGCACAGTCTATGCTGAATCGTTTtATAGCCTTAAAAGCTGAGGAGAAGAAGAAACCCAAGGAACGTCGACCCTACCTTGCCTCTGAATGTCGTGACCTTGCAGAAGCTGACAAATGGCGTCAACAGATCATGCGTGAGATTGGTCGCAAGGTTGCtGAGATCCAAAACGAAGGCCTTGGTGAGCACCGTTTGCGTGATCTCAATGATGAGATTAACAAGCTCATTAGAGAGAAGTCACATTGGGAGCGTCGTATAATTGAGCTTGGTGGCCCCAATTATACCAAACACTCGGCCAAAATGACTGATTTAGATGGGAATATTGTTGATGTACCAAACCCCAGTGGTCGTGGTCCTGGATATCGGTATTTTGGTGCTGCAAAGAAGTTACCAGGTGTTAGGGAATTaTTTGAGAAGCCACCTGAACTGCGGAAGCGCAGGACTCGTTATGACATATACAAGAGGATCGACGCAAGCTACTATGGCTACAGGGACGAcGAGGATGGGGTTTTGGAAAGAGTGGAAGGTCCAAGTGAAGAGCGAATGAGAGCTGAGGCAGTTGAAGAGTGGCAAAGAATGGAAGAGATTAGGAAAGAAGCAAAGAGGGCAGTAAAGAGCGGGGAGGTAGCCAGCGTGGTGAATGTTGCAGCAAAGGAGGTACTGTTTGAAGAAGAGGAAGAGGTTGTTGAAGAAGAGAGGAAAAGAGAGAGGGAAATGAAGGAGAATTTGGACAAGGAGAGGGAATTTGTGGTGCATGTGCCATTACCTGATGAAAAGGAGATTGAGAAGATGGTATTGGAGAAGAAGAAGATGGAACTGTTGAGTAAGTATGCGAGTGATATGCTTTTAGAGGAACAGAGTGAAGCCAAATCCATGCTCAATATACAAAGATAACTCCCAAAATCGTCATAGATTTGTTTAATCTATTTTCCTTACTCAAATTCTCCATGCCTATACTATGCAtCACACACAGCTTCTGTGGTCAAATGGCAAaGTCATATTCTGGAATCAAGCAGAGTGATGCAAAAATcGAGGTATATGAGGAACTAaGTTGTAATGTTTGTTCAGATCTCTCTATATTTTTGGTTTAAACATCTCTTAGAGATACAATCAACGTTGATAACTGATGTAAAACCTTAGATAATAGGATGTTTGAATTTTCCAAACTGATGTAACTTTGAGAGATGTTTTGGGAGCCGCtCTCTCAAGAGTTGATTTACATTTAGATAAAGACACATATTTAGGCTCTTTCCATAAGGTTCTTTGTATTTCCATTTTGCTTCTTTCGGG TGCGCTCGGCGTGCTAAAGTTAGAGCTTCTAGTTCGAGTCTGCCTATTGCCATTTCACCGTCTAAGGAGGAAGAAAAGGAATCGAGGTTTCTTCCGGTGCTACTCGTCGGCCAAATTTTGGTCAGGATATTGTTCGACGGTTAAATTATTCTGCTGCAGGATACGATGGCTCGAAATGAGGAGAAAGCACAGTCTATGCTGAATCGTTTTATAGCCTTAAAAGCTGAGGAGAAGAAGAAACCCAAGGAACGTCGACCCTACCTTGCCTCTGAATGTCGTGACCTTGCAGAAGCTGACAAATGGCGTCAACAGATCATGCGTGAGATTGGTCGCAAGGTTGCTGAGATCCAAAACGAAGGCCTTGGTGAGCACCGTTTGCGTGATCTCAATGATGAGATTAACAAGCTCATTAGAGAGAAGTCACATTGGGAGCGTCGTATAATTGAGCTTGGTGGCCCCAATTATACCAAACACTCGGCCAAAATGACTGATTTAGATGGGAATATTGTTGATGTACCAAACCCCAGTGGTCGTGGTCCTGGATATCGGTATTTTGGTGCTGCAAAGAAGTTACCAGGTGTTAGGGAATTATTTGAGAAGCCACCTGAACTGCGGAAGCGCAGGACTCGTTATGACATATACAAGAGGATCGACGCAAGCTACTATGGCTACAGGGACGACGAGGATGGGGTTTTGGAAAGAGTGGAAGGTCCAAGTGAAGAGCGAATGAGAGCTGAGGCAGTTGAAGAGTGGCAAAGAATGGAAGAGATTAGGAAAGAAGCAAAGAGGGCAGTAAAGAGCGGGGAGGTAGCCAGCGTGGTGAATGTTGCAGCAAAGGAGGTACTGTTTgaagaagaggaagaggttgttgaagaagagaggaaaagagagagggaaatgaaggagaatttggacaaggagagggaATTTGTGGTGCATGTGCCATTACCTGATGAAAAGGAGATTGAGAAGATGGTATTGGAGAAGAAGAAGATGGAACTGTTGAGTAAGTATGCGAGTGATATGCTTTTAGAGGAACAGAGTGAAGCCAAATCCATGCTCAATATACAAAGATAACTCCCAAAATCGTCATAGATTTGTTTAATCTATTTTCCTTACTCAAATTCTCCATGCCTATACTATGCATCACACACAGCTTCTGTGGTCAAATGGCAAAGTCATATTCTGGAATCAAGCAGAGTGATGCAAAAATCGAGGTATATGAGGAACTAAGTTGTAATGTTTGTTCAGATCTCTCTATATTTTTGGTTTAAACATCTCTTAGAGATACAATCAACGTTGATAACTGATGTAAAACCTTAGATAATAGGATGTTTGAATTTTCCAAACTGATGTAACTTTGAGAGATGTTTTGGGAGCCGCTCTCTCAAGAGTTGATTTACATTTAGATAAAGACACATATTTAGGCTCTTTCCATAAGGTTCTTTGTATTTCCATTTTGCTTCTTTCGGG ATGGCTCGAAATGAGGAGAAAGCACAGTCTATGCTGAATCGTTTtATAGCCTTAAAAGCTGAGGAGAAGAAGAAACCCAAGGAACGTCGACCCTACCTTGCCTCTGAATGTCGTGACCTTGCAGAAGCTGACAAATGGCGTCAACAGATCATGCGTGAGATTGGTCGCAAGGTTGCtGAGATCCAAAACGAAGGCCTTGGTGAGCACCGTTTGCGTGATCTCAATGATGAGATTAACAAGCTCATTAGAGAGAAGTCACATTGGGAGCGTCGTATAATTGAGCTTGGTGGCCCCAATTATACCAAACACTCGGCCAAAATGACTGATTTAGATGGGAATATTGTTGATGTACCAAACCCCAGTGGTCGTGGTCCTGGATATCGGTATTTTGGTGCTGCAAAGAAGTTACCAGGTGTTAGGGAATTaTTTGAGAAGCCACCTGAACTGCGGAAGCGCAGGACTCGTTATGACATATACAAGAGGATCGACGCAAGCTACTATGGCTACAGGGACGAcGAGGATGGGGTTTTGGAAAGAGTGGAAGGTCCAAGTGAAGAGCGAATGAGAGCTGAGGCAGTTGAAGAGTGGCAAAGAATGGAAGAGATTAGGAAAGAAGCAAAGAGGGCAGTAAAGAGCGGGGAGGTAGCCAGCGTGGTGAATGTTGCAGCAAAGGAGGTACTGTTTGAAGAAGAGGAAGAGGTTGTTGAAGAAGAGAGGAAAAGAGAGAGGGAAATGAAGGAGAATTTGGACAAGGAGAGGGAATTTGTGGTGCATGTGCCATTACCTGATGAAAAGGAGATTGAGAAGATGGTATTGGAGAAGAAGAAGATGGAACTGTTGAGTAAGTATGCGAGTGATATGCTTTTAGAGGAACAGAGTGAAGCCAAATCCATGCTCAATATACAAAGATAA MARNEEKAQSMLNRFIALKAEEKKKPKERRPYLASECRDLAEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKSHWERRIIELGGPNYTKHSAKMTDLDGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPSEERMRAEAVEEWQRMEEIRKEAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKREREMKENLDKEREFVVHVPLPDEKEIEKMVLEKKKMELLSKYASDMLLEEQSEAKSMLNIQR*
BLAST of Cucsa.105980.1 vs. Swiss-Prot
Match: ISY1_MOUSE (Pre-mRNA-splicing factor ISY1 homolog OS=Mus musculus GN=Isy1 PE=1 SV=2) HSP 1 Score: 272.7 bits (696), Expect = 4.8e-72 Identity = 151/299 (50.50%), Postives = 198/299 (66.22%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. Swiss-Prot
Match: ISY1_RAT (Pre-mRNA-splicing factor ISY1 homolog OS=Rattus norvegicus GN=Isy1 PE=2 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 6.3e-72 Identity = 153/299 (51.17%), Postives = 200/299 (66.89%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. Swiss-Prot
Match: ISY1_HUMAN (Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens GN=ISY1 PE=1 SV=3) HSP 1 Score: 270.8 bits (691), Expect = 1.8e-71 Identity = 156/305 (51.15%), Postives = 200/305 (65.57%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. Swiss-Prot
Match: ISY1_DICDI (Pre-mRNA-splicing factor ISY1 homolog OS=Dictyostelium discoideum GN=isy1 PE=3 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 1.2e-62 Identity = 133/306 (43.46%), Postives = 187/306 (61.11%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. Swiss-Prot
Match: ISY1_USTMA (Pre-mRNA-splicing factor ISY1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ISY1 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.7e-40 Identity = 93/191 (48.69%), Postives = 122/191 (63.87%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. TrEMBL
Match: A0A0A0KBN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431430 PE=4 SV=1) HSP 1 Score: 601.3 bits (1549), Expect = 6.6e-169 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. TrEMBL
Match: W9SMM7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022747 PE=4 SV=1) HSP 1 Score: 540.4 bits (1391), Expect = 1.4e-150 Identity = 271/305 (88.85%), Postives = 289/305 (94.75%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. TrEMBL
Match: M5XCY2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009215mg PE=4 SV=1) HSP 1 Score: 535.0 bits (1377), Expect = 5.8e-149 Identity = 267/303 (88.12%), Postives = 283/303 (93.40%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. TrEMBL
Match: A0A059CKB1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00068 PE=4 SV=1) HSP 1 Score: 532.3 bits (1370), Expect = 3.8e-148 Identity = 265/305 (86.89%), Postives = 287/305 (94.10%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. TrEMBL
Match: A0A061DJ91_THECC (Pre-mRNA-splicing factor isy-1 OS=Theobroma cacao GN=TCM_001356 PE=4 SV=1) HSP 1 Score: 525.4 bits (1352), Expect = 4.6e-146 Identity = 265/304 (87.17%), Postives = 284/304 (93.42%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. TAIR10
Match: AT3G18790.1 (AT3G18790.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 489.2 bits (1258), Expect = 1.9e-138 Identity = 243/303 (80.20%), Postives = 270/303 (89.11%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. NCBI nr
Match: gi|778728897|ref|XP_011659495.1| (PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Cucumis sativus]) HSP 1 Score: 601.3 bits (1549), Expect = 9.5e-169 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. NCBI nr
Match: gi|659122527|ref|XP_008461190.1| (PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Cucumis melo]) HSP 1 Score: 599.7 bits (1545), Expect = 2.8e-168 Identity = 302/303 (99.67%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. NCBI nr
Match: gi|1009139931|ref|XP_015887375.1| (PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Ziziphus jujuba]) HSP 1 Score: 553.9 bits (1426), Expect = 1.7e-154 Identity = 275/303 (90.76%), Postives = 292/303 (96.37%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. NCBI nr
Match: gi|703162322|ref|XP_010113022.1| (hypothetical protein L484_022747 [Morus notabilis]) HSP 1 Score: 540.4 bits (1391), Expect = 2.0e-150 Identity = 271/305 (88.85%), Postives = 289/305 (94.75%), Query Frame = 1
BLAST of Cucsa.105980.1 vs. NCBI nr
Match: gi|645263657|ref|XP_008237334.1| (PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Prunus mume]) HSP 1 Score: 538.1 bits (1385), Expect = 9.9e-150 Identity = 268/303 (88.45%), Postives = 283/303 (93.40%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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