Cucsa.105210.6 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTAAATTTGTAATTTGTACATATATTCTACGGTTCGGTTCGGTTCGGTTCGGTTCGGTCAGTTTGTCTAACTAATTTTTCTGCTGACCGATTCGAACTAGTCTGGTCGTTGGTTTGGACCGATTCTTCCACACCCCCACGACATATCGAACTCGTATATTCTCTTGTGTGCATCTCTTTAGGTGGAGCTCCGACCCCGACCAGGTATTCAATCATTTTGTTTCACTTCATTTCAGATTATAATTTCCCTGTTCTTCGTTATTATTCAATTTTTTTTTTTACTAATTTGAAGTAGCAATCATACAATTAGTTCTTGCCAAATCACTGATTCTGTATATTGACCATTCAAATTTTTTCATCGATTTCCATTAAATAAATAATAAACTAATTAGGCCAGGAATTGACAGATGGGGGAACTGGCAACTGAGAAGCATGTTCAATACATATTATCTGTTGAAAAGGTGCGTTTCCCATTTATGGATCTTGTGCATTTTAGGGACTTTTGTCATAGATCACTTTGAAACATGATATTGCACTTTGATTCGTGATTTCCTGTACCAGTAGAATTGTTTGTGAATGATTAAAAAAATACGTTTTTGAGTCATTTCAAAATCACTCTTTCTATCTGTTTATTCTATTGTTTTGTGTACAGAAAAAGGATGATTTTCAATCTGTGGTGATGGAACATCTAAGGATGAATGGTGCATACTGGGGGCTGACTGCACTTGATATTCTAGGAAAGCTCGATACTGTTGATGCTGATGAAGTTGTTTCATGGGTAATGTCATGCCAACACGAGTCAGGTAAGTTCTCTAAAGAATTTACGGCCTTAGTTTGTGCTTATGGGTGTGTGTTTGTCTTGAACAAAGTTGCTATTCAATCACATTACACTCTCTCAGCATGAATTTGGGGATTGTTTACCTGATTCTTATCTGAATCATGGTAATTACTTGGTGTTATATGGGCGTTGAGTCGTTGATAGCCAAGGCAGAAAAGTGAAACTTCATTGTGCAGGTGGTTTTTCTGGCAATGTTGGACATGATCCACACATACTTTACACCCTTAGTGCTGTGCAAGTTTTAGCTCTTTTTGACAAGCTGGATGTTTTAGATGTTGATAAGGTGACAAATTGTATCCTTTAAAAATGTTCTTTCTTCTCTTTTGATTGGACGTTTAGTTTTTGCTTACTTACATGAATCCTTGATAGGCGTTGGAGGCTAGAACCACTTTGGGTAACAGAATTTCTAATTGTATATTCCTCATCAGCATTCACTTATTAAAATAGTTGTTGAGAGCTTTTTTTTTTTTGGATCTTCTGACATGTACTTTTCTTTAGAAGGAAAAACACTTTTTCATTGATGTTGATATTATAAAAAGGGTTCAAACAATATCTAGATATAGGAGTATAATCACAAAAATGTTAATCCGTACTTATTGCTGAATAGTCTACAATTTCTTTCTATCTATAAGGTAGAAACAGTAGTCTTACTAGTTACCAGCATTTAATCACAGGACCTAGCTCTTTTTCAGCTATGGGAGAACATCATTGAAAAATGTTCTCATTGAGTAAACCATTTATTACCCAGAACAACCAAGGCTAGGAAGGGGGAATTCGACATTTTAACCTAAAAAAAGAACGAAAATCAGATGCACTTGACCCTCCCCTATATATCCTTTTTCTTGAGAAAAATCACTTGCATTAATATGAATGACAGTATATAATGCCATACGAAAACAGAACGGGTCATCAGAAAACAAGTTGCTTCAATCTTTTGAGCAGGGAAAAAGGAAAACAAGAAAAAAAGAAAAGAAAAAACATCATAACATAGACCTAAAATGAGGCATTAAAATGTACCATTTTTCCAACGTCTTCCCAAGAGCCTTCCAACTCTTAAAAGATATTCCCTTTATATTCCGGCCAAGTATTCCCCAAGGCTGCAAAAAGGTAGTCCGTCGAAGTGTAAGATCCTGTATCAAAAAGGAGAGTGTAAAACCACTTTCTCCAGTGCAGTATGATAACCAAACAAAGGCATAAAAGAGACCGTGTCTTTCAGAACTTCCAATAAATCTTGAGTGCAAAGGGACAAGGATGAAGAATGTGATTCAAATCTCCTTGTGCCTGATTGAATGCACCATTGACGGTTATGTACTAATATAGATGACGAGTTTTATAAAGTATCTGAATTTAGGGTAGTTGGTTGTCCCATGAGTGGCAAGATCAACTGTTTCACTTGACCCTACACTAGATGTTGTTGGCCTTCAAAATGAAGATGGCTCCTTTTCCGGGGATATTTGGGGTGAAGTTGATTCAAGGTAGTCTCCAACTCTATCCATTTCTTTATTATATCTTGTCTTAAGGAATCAATGCTTGGCTCAATCTTACAAGTCACCTAGCATAGAATGTTTATGAGCTTCATTTTCTGCCCTCCTTTCAGATTCTCATATATTGCAATTTTATGCTTATCGTTGTTACATCAATTGGATAAAATCAATGTTGAGAAGGCTGTGAACTTCGTCGTTAGTTGCAAAAATATGGATGGTGGTTTTGGCTGTACACCTGGTGGAGAGTCACATTCTGGGCAAAGTATGTAACCATCTCTTTTTTTTTTGTGTTTCAAGTACTCCAAAATTGTTCCTAAAAAATGATCAATTTACAAAGCGAGATAGCGGATAATATGCTATCAGTGTTGGTGATAGCACAATGTTGCTTTATTCTATGAACTTTACAATGGTGAAAAAATTGCAACTGAAGTATTAGGGTGAGAATAAGTTTCTGATTTACACAATACTCTTGCTTTAATCTCAACTAGCAGTTATTTACACTGTCCTTCAATCCAATTCAAATGTCTAAACGTCAATGCATTTCTGTAAATACAGTTTTCTGTTGTGTTGGCGCTCTTGCTCTTACGGGGTCTCTTCATCATGTTGACAAGGATCTTCTTGGCTGGTGGTTGTGTGAGCGGCAAGTTAAATCTGGAGGTCTTAATGGTCGCCCTGAAAAACTCCCTGATGTGGGTTTGGGATAAGATCACTTTTACAAAGTTTATTTCCATCAGTTGCTTTTGAACTTCTACTTAGAGATTTTGCTTCGTTGCTGCAGGTCTGCTATTCATGGTGGGTTCTTTCTAGCTTGATCATGATTGACAGGGTCCACTGGATTAGTAAGGAAAAACTGATCAAGTTCATCTTAGACTGCCAGGTTGCTTAGGGCTAATTGTTTCATTACCTAGTATGGCTTGTAAATTAGGGATCGTATTGTTTCTAATTTAAGATAAATTCCACAACGTCGTTCTTGTTATTGGAAAAGTGCAGGATACCGAAAATGGAGGAATTTCAGATAGACCAGATGATGCTGTTGATGTCTATCACACATACTTTGGAATAGCAGGTGCATCTTACTATCTTAAGCAGACAAATCTCCTACATATCTTCTTCCTATTGCAGATAACCAAATATTTGTTAGCCTGAAAACATTTATTGTTGGCTAATGGCTAATGTAAATTTATACGTAAATGAATGTTGCAGGACTTTCACTTCTTGAATATCCATCGTTGAAACCCATAGATCCAGCATACGCTTTACCAGTCGATGTCGTGAATAGGATTCGTCTTGGGAAAAGGCATGCTATCTAAGAGCGTTAAATCTTTTTTCCAAGTTCTGGTAACTTCAATTCCATATCAGTCTTTATTTGATGATGGGAAGACATTGATTAGTAGTGAAATTTAGGTGTTGGACCATGAGTTTTGGTTCAATATAGGTCTTAGACTTGTGAAGAAAGGTGAATCATGTACTGTATTGTAGACCAATAGTCAATTGTCACTGGCAGGATTTGATCAAAGTACAATGATCTAGAAATTGCCTATTGATTTCTTCTTATTTTCTTTTCTTTTGCGTTTCAAGATAGAGGTACATTTATCTTTTTGCTTAATAGGGTCTTGTTATATCATAGGATTGTTTGTGT TGTAAATTTGTAATTTGTACATATATTCTAcggttcggttcggttcggttcggttcggtCAGTTTGTCTAACTAATTTTTCTGCTGACCGATTCGAACTAGTCTGGTCGTTGGTTTGGACCGATTCTTCCACACCCCCACGACATATCGAACTCGTATATTCTCTTGTGTGCATCTCTTTAGGTGGAGCTCCGACCCCGACCAGGCCAGGAATTGACAGATGGGGGAACTGGCAACTGAGAAGCATGTTCAATACATATTATCTGTTGAAAAGAAAAAGGATGATTTTCAATCTGTGGTGATGGAACATCTAAGGATGAATGGTGCATACTGGGGGCTGACTGCACTTGATATTCTAGGAAAGCTCGATACTGTTGATGCTGATGAAGTTGTTTCATGGGTAATGTCATGCCAACACGAGTCAGGTGGTTTTTCTGGCAATGTTGGACATGATCCACACATACTTTACACCCTTAGTGCTGTGCAAGTTTTAGCTCTTTTTGACAAGCTGGATGTTTTAGATGTTGATAAGGTGACAAATTATGTTGTTGGCCTTCAAAATGAAGATGGCTCCTTTTCCGGGGATATTTGGGGTGAAGTTGATTCAAGATTCTCATATATTGCAATTTTATGCTTATCGTTGTTACATCAATTGGATAAAATCAATGTTGAGAAGGCTGTGAACTTCGTCGTTAGTTGCAAAAATATGGATGGTGGTTTTGGCTGTACACCTGGTGGAGAGTCACATTCTGGGCAAATTTTCTGTTGTGTTGGCGCTCTTGCTCTTACGGGGTCTCTTCATCATGTTGACAAGGATCTTCTTGGCTGGTGGTTGTGTGAGCGGCAAGTTAAATCTGGAGGTCTTAATGGTCGCCCTGAAAAACTCCCTGATGTCTGCTATTCATGGTGGGTTCTTTCTAGCTTGATCATGATTGACAGGGTCCACTGGATTAGTAAGGAAAAACTGATCAAGTTCATCTTAGACTGCCAGGTTGCTTAGGGCTAATTGTTTCATTACCTAGTATGGCTTGTAAATTAGGGATCGTATTGTTTCTAATTTAAGATAAATTCCACAACGTCGTTCTTGTTATTGGAAAAGTGCAGGATACCGAAAATGGAGGAATTTCAGATAGACCAGATGATGCTGTTGATGTCTATCACACATACTTTGGAATAGCAGGACTTTCACTTCTTGAATATCCATCGTTGAAACCCATAGATCCAGCATACGCTTTACCAGTCGATGTCGTGAATAGGATTCGTCTTGGGAAAAGGCATGCTATCTAAGAGCGTTAAATCTTTTTTCCAAGTTCTGGTAACTTCAATTCCATATCAGTCTTTATTTGATGATGGGAAGACATTGATTAGTAGTGAAATTTAGGTGTTGGACCATGAGTTTTGGTTCAATATAGGTCTTAGACTTGTGAAGAAAGGTGAATCATGTACTGTATTGTAGACCAATAGTCAATTGTCACTGGCAGGATTTGATCAAAGTACAATGATCTAGAAATTGCCTATTGATTTCTTCTTATTTTCTTTTCTTTTGCGTTTCAAGATAGAGGTACATTTATCTTTTTGCTTAATAGGGTCTTGTTATATCATAGGATTGTTTGTGT ATGGGGGAACTGGCAACTGAGAAGCATGTTCAATACATATTATCTGTTGAAAAGAAAAAGGATGATTTTCAATCTGTGGTGATGGAACATCTAAGGATGAATGGTGCATACTGGGGGCTGACTGCACTTGATATTCTAGGAAAGCTCGATACTGTTGATGCTGATGAAGTTGTTTCATGGGTAATGTCATGCCAACACGAGTCAGGTGGTTTTTCTGGCAATGTTGGACATGATCCACACATACTTTACACCCTTAGTGCTGTGCAAGTTTTAGCTCTTTTTGACAAGCTGGATGTTTTAGATGTTGATAAGGTGACAAATTATGTTGTTGGCCTTCAAAATGAAGATGGCTCCTTTTCCGGGGATATTTGGGGTGAAGTTGATTCAAGATTCTCATATATTGCAATTTTATGCTTATCGTTGTTACATCAATTGGATAAAATCAATGTTGAGAAGGCTGTGAACTTCGTCGTTAGTTGCAAAAATATGGATGGTGGTTTTGGCTGTACACCTGGTGGAGAGTCACATTCTGGGCAAATTTTCTGTTGTGTTGGCGCTCTTGCTCTTACGGGGTCTCTTCATCATGTTGACAAGGATCTTCTTGGCTGGTGGTTGTGTGAGCGGCAAGTTAAATCTGGAGGTCTTAATGGTCGCCCTGAAAAACTCCCTGATGTCTGCTATTCATGGTGGGTTCTTTCTAGCTTGATCATGATTGACAGGGTCCACTGGATTAGTAAGGAAAAACTGATCAAGTTCATCTTAGACTGCCAGGTTGCTTAG MGELATEKHVQYILSVEKKKDDFQSVVMEHLRMNGAYWGLTALDILGKLDTVDADEVVSWVMSCQHESGGFSGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDSRFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFGCTPGGESHSGQIFCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWISKEKLIKFILDCQVA*
BLAST of Cucsa.105210.6 vs. Swiss-Prot
Match: PGTB1_ARATH (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana GN=RGTB1 PE=1 SV=1) HSP 1 Score: 446.4 bits (1147), Expect = 2.1e-124 Identity = 201/257 (78.21%), Postives = 232/257 (90.27%), Query Frame = 1
HSP 2 Score: 80.5 bits (197), Expect = 3.0e-14 Identity = 66/288 (22.92%), Postives = 130/288 (45.14%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. Swiss-Prot
Match: PGTB2_ARATH (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana GN=RGTB2 PE=1 SV=1) HSP 1 Score: 436.4 bits (1121), Expect = 2.2e-121 Identity = 202/258 (78.29%), Postives = 234/258 (90.70%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. Swiss-Prot
Match: PGTB2_HUMAN (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2) HSP 1 Score: 367.5 bits (942), Expect = 1.2e-100 Identity = 161/254 (63.39%), Postives = 205/254 (80.71%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. Swiss-Prot
Match: PGTB2_BOVIN (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1) HSP 1 Score: 364.8 bits (935), Expect = 8.0e-100 Identity = 159/254 (62.60%), Postives = 204/254 (80.31%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. Swiss-Prot
Match: PGTB2_MOUSE (Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2) HSP 1 Score: 362.5 bits (929), Expect = 4.0e-99 Identity = 160/254 (62.99%), Postives = 202/254 (79.53%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. TrEMBL
Match: A0A0A0K723_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433280 PE=4 SV=1) HSP 1 Score: 535.8 bits (1379), Expect = 2.9e-149 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. TrEMBL
Match: A0A0B2SUM0_GLYSO (Geranylgeranyl transferase type-2 subunit beta OS=Glycine soja GN=glysoja_015417 PE=4 SV=1) HSP 1 Score: 490.0 bits (1260), Expect = 1.8e-135 Identity = 228/257 (88.72%), Postives = 247/257 (96.11%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. TrEMBL
Match: A0A0K9R3A8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_111490 PE=4 SV=1) HSP 1 Score: 490.0 bits (1260), Expect = 1.8e-135 Identity = 225/257 (87.55%), Postives = 241/257 (93.77%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. TrEMBL
Match: Q6X0N9_SOYBN (Putative Rab geranylgeranyl transferase type II beta subunit OS=Glycine max PE=4 SV=1) HSP 1 Score: 490.0 bits (1260), Expect = 1.8e-135 Identity = 228/257 (88.72%), Postives = 247/257 (96.11%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. TrEMBL
Match: I1KS88_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G111200 PE=4 SV=1) HSP 1 Score: 490.0 bits (1260), Expect = 1.8e-135 Identity = 228/257 (88.72%), Postives = 247/257 (96.11%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. TAIR10
Match: AT5G12210.1 (AT5G12210.1 RAB geranylgeranyl transferase beta subunit 1) HSP 1 Score: 446.4 bits (1147), Expect = 1.2e-125 Identity = 201/257 (78.21%), Postives = 232/257 (90.27%), Query Frame = 1
HSP 2 Score: 80.5 bits (197), Expect = 1.7e-15 Identity = 66/288 (22.92%), Postives = 130/288 (45.14%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. TAIR10
Match: AT3G12070.1 (AT3G12070.1 RAB geranylgeranyl transferase beta subunit 2) HSP 1 Score: 436.4 bits (1121), Expect = 1.2e-122 Identity = 202/258 (78.29%), Postives = 234/258 (90.70%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. TAIR10
Match: AT5G40280.1 (AT5G40280.1 Prenyltransferase family protein) HSP 1 Score: 112.8 bits (281), Expect = 3.1e-25 Identity = 71/249 (28.51%), Postives = 127/249 (51.00%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. TAIR10
Match: AT2G39550.1 (AT2G39550.1 Prenyltransferase family protein) HSP 1 Score: 112.8 bits (281), Expect = 3.1e-25 Identity = 67/200 (33.50%), Postives = 101/200 (50.50%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. NCBI nr
Match: gi|778729139|ref|XP_011659536.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus]) HSP 1 Score: 535.8 bits (1379), Expect = 4.2e-149 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. NCBI nr
Match: gi|659122320|ref|XP_008461078.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta [Cucumis melo]) HSP 1 Score: 528.1 bits (1359), Expect = 8.7e-147 Identity = 252/257 (98.05%), Postives = 256/257 (99.61%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. NCBI nr
Match: gi|502140826|ref|XP_004504351.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cicer arietinum]) HSP 1 Score: 498.0 bits (1281), Expect = 9.7e-138 Identity = 231/257 (89.88%), Postives = 248/257 (96.50%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. NCBI nr
Match: gi|1012104252|ref|XP_015958216.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Arachis duranensis]) HSP 1 Score: 491.5 bits (1264), Expect = 9.1e-136 Identity = 225/257 (87.55%), Postives = 248/257 (96.50%), Query Frame = 1
BLAST of Cucsa.105210.6 vs. NCBI nr
Match: gi|947094204|gb|KRH42789.1| (hypothetical protein GLYMA_08G111200 [Glycine max]) HSP 1 Score: 490.0 bits (1260), Expect = 2.6e-135 Identity = 228/257 (88.72%), Postives = 247/257 (96.11%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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