Cucsa.100760.1 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.100760.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00927 : 64800 .. 65340 (+)
Sequence length541
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGAAGTTTGTGAGAGAATTAGAATTATAGATATCTAATATATATATCATATCAAATTAGCTTATAATTTGAAAGATGACTCTTGGAATCGGGATTGGTGGTGGCATTCAAATTGGAGCTCCTTCAGTGGACAAATCGGTTACAGACGTACTTCTTCCTCTTGTGATTAACCATTGTCTGACTGTACTTCAGATTGAGGCCGAACTTGATGGTATTATAAGTTGTGATGTTGAGGGTGGGCTAGCTGGCAAAACATATATCCTTCAGTTGAGGCTAAAGTGCAGGGTTGGTAATATTTTTGTTATTAAAATCGTTCTGGTTAAAATCTTCTGGGCATTGAATGCCATTCCACTGGTTGTGTCTTTCGAGTATCTGGAAGAAATCAACATCTAGAAACCGTGAAATCATGCTATGTATAATAAAAATGGTGCTTTCTTATGCATCATTTCCATCTCTCTCACCTATCTATCAATAAATATATAAAACTGGTCTCTCTTTTAACAATGCAATAGGAGGATATTCAGTTTATATTATATTTCT

mRNA sequence

ATAGAAGTTTGTGAGAGAATTAGAATTATAGATATCTAATATATATATCATATCAAATTAGCTTATAATTTGAAAGATGACTCTTGGAATCGGGATTGGTGGTGGCATTCAAATTGGAGCTCCTTCAGTGGACAAATCGGTTACAGACGTACTTCTTCCTCTTGTGATTAACCATTGTCTGACTGTACTTCAGATTGAGGCCGAACTTGATGGTATTATAAGTTGTGATGTTGAGGGTGGGCTAGCTGGCAAAACATATATCCTTCAGTTGAGGCTAAAGTGCAGGGTTGGTAATATTTTTGTTATTAAAATCGTTCTGGTTAAAATCTTCTGGGCATTGAATGCCATTCCACTGGTTGTGTCTTTCGAGTATCTGGAAGAAATCAACATCTAGAAACCGTGAAATCATGCTATGTATAATAAAAATGGTGCTTTCTTATGCATCATTTCCATCTCTCTCACCTATCTATCAATAAATATATAAAACTGGTCTCTCTTTTAACAATGCAATAGGAGGATATTCAGTTTATATTATATTTCT

Coding sequence (CDS)

ATGACTCTTGGAATCGGGATTGGTGGTGGCATTCAAATTGGAGCTCCTTCAGTGGACAAATCGGTTACAGACGTACTTCTTCCTCTTGTGATTAACCATTGTCTGACTGTACTTCAGATTGAGGCCGAACTTGATGGTATTATAAGTTGTGATGTTGAGGGTGGGCTAGCTGGCAAAACATATATCCTTCAGTTGAGGCTAAAGTGCAGGGTTGGTAATATTTTTGTTATTAAAATCGTTCTGGTTAAAATCTTCTGGGCATTGAATGCCATTCCACTGGTTGTGTCTTTCGAGTATCTGGAAGAAATCAACATCTAG

Protein sequence

MTLGIGIGGGIQIGAPSVDKSVTDVLLPLVINHCLTVLQIEAELDGIISCDVEGGLAGKTYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLEEINI*
Homology
[Close]
BLAST of Cucsa.100760.1 vs. TrEMBL
Match: A0A0A0KKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.5e-23
Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 1 

Query: 1   MTLGIGIGGGIQIGAPSV-DKSVTDVLLPLVINHCLTVLQIEAELDGIISCDVEGGLAGK 60
           MTLGIGIGGG+QI    + D ++ D+L+  VI HC +VLQI+A  +G I   +E GL GK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLEEINI 106
           TYIL+L+LK R+G+ +V+KIVLVK+F+     P VVSFEYLEEI+I
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]
BLAST of Cucsa.100760.1 vs. TrEMBL
Match: A0A0A0KFK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.4e-22
Identity = 57/106 (53.77%), Postives = 78/106 (73.58%), Query Frame = 1 

Query: 1   MTLGIGIGGGIQIGAPSV-DKSVTDVLLPLVINHCLTVLQIEAELDGIISCDVEGGLAGK 60
           MTLGIGI GG+QI    + D ++ D+L+  V+ HC +VLQI+A  +G+I   +E GL GK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLEEINI 106
           TY L+L++K R+G+ +V+KIVLVK+F+     P VVSFEYLEEINI
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]
BLAST of Cucsa.100760.1 vs. TrEMBL
Match: A0A0A0KFL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 1 

Query: 1   MTLGIGIGGGIQIGAPSV-DKSVTDVLLPLVINHCLTVLQIEAELDGIISCDVEGGLAGK 60
           M++G+GIGG +QI    + D ++ D+L+  V+ HC TVLQI+A  +G I   +E G+ GK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLE 102
           TY  +L+LK +VG+ +VIK VLVKIF+    +P +VSFEYLE
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]
BLAST of Cucsa.100760.1 vs. TrEMBL
Match: A0A0A0KIX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 1 

Query: 19  DKSVTDVLLPLVINHCLTVLQIEAELDGIISCDVEGGLAGKTYILQLRLKCRVGNIFVIK 78
           D+S+ +  +PLVINHC ++ QI+ + +GI+    E G  GKTY L+L+LK +VG+ +V+K
Sbjct: 18  DRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDRYVLK 77

Query: 79  IVLVKIFWALNAIPLVVSFEYLEEINI 106
           I ++K F  L   P ++SFE  +EIN+
Sbjct: 78  IGVIKFFCPLFGPPSLLSFECSKEINV 104

[Close]
BLAST of Cucsa.100760.1 vs. NCBI nr
Match: gi|700193132|gb|KGN48336.1| (hypothetical protein Csa_6G483230 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 9.4e-23
Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 1 

Query: 1   MTLGIGIGGGIQIGAPSV-DKSVTDVLLPLVINHCLTVLQIEAELDGIISCDVEGGLAGK 60
           MTLGIGIGGG+QI    + D ++ D+L+  VI HC +VLQI+A  +G I   +E GL GK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLEEINI 106
           TYIL+L+LK R+G+ +V+KIVLVK+F+     P VVSFEYLEEI+I
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]
BLAST of Cucsa.100760.1 vs. NCBI nr
Match: gi|700193134|gb|KGN48338.1| (hypothetical protein Csa_6G483240 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-21
Identity = 57/106 (53.77%), Postives = 78/106 (73.58%), Query Frame = 1 

Query: 1   MTLGIGIGGGIQIGAPSV-DKSVTDVLLPLVINHCLTVLQIEAELDGIISCDVEGGLAGK 60
           MTLGIGI GG+QI    + D ++ D+L+  V+ HC +VLQI+A  +G+I   +E GL GK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLEEINI 106
           TY L+L++K R+G+ +V+KIVLVK+F+     P VVSFEYLEEINI
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]
BLAST of Cucsa.100760.1 vs. NCBI nr
Match: gi|700193139|gb|KGN48343.1| (hypothetical protein Csa_6G483250 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 1 

Query: 1   MTLGIGIGGGIQIGAPSV-DKSVTDVLLPLVINHCLTVLQIEAELDGIISCDVEGGLAGK 60
           M++G+GIGG +QI    + D ++ D+L+  V+ HC TVLQI+A  +G I   +E G+ GK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  TYILQLRLKCRVGNIFVIKIVLVKIFWALNAIPLVVSFEYLE 102
           TY  +L+LK +VG+ +VIK VLVKIF+    +P +VSFEYLE
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]
BLAST of Cucsa.100760.1 vs. NCBI nr
Match: gi|700193133|gb|KGN48337.1| (hypothetical protein Csa_6G483235 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 1 

Query: 19  DKSVTDVLLPLVINHCLTVLQIEAELDGIISCDVEGGLAGKTYILQLRLKCRVGNIFVIK 78
           D+S+ +  +PLVINHC ++ QI+ + +GI+    E G  GKTY L+L+LK +VG+ +V+K
Sbjct: 18  DRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDRYVLK 77

Query: 79  IVLVKIFWALNAIPLVVSFEYLEEINI 106
           I ++K F  L   P ++SFE  +EIN+
Sbjct: 78  IGVIKFFCPLFGPPSLLSFECSKEINV 104

The following BLAST results are available for this feature:
BLAST of Cucsa.100760.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKQ8_CUCSA6.5e-2356.60Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1[more]
A0A0A0KFK8_CUCSA9.4e-2253.77Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1[more]
A0A0A0KFL5_CUCSA1.4e-1749.02Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1[more]
A0A0A0KIX9_CUCSA1.5e-1143.68Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483235 PE=4 SV=1[more]
BLAST of Cucsa.100760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193132|gb|KGN48336.1|9.4e-2356.60hypothetical protein Csa_6G483230 [Cucumis sativus][more]
gi|700193134|gb|KGN48338.1|1.4e-2153.77hypothetical protein Csa_6G483240 [Cucumis sativus][more]
gi|700193139|gb|KGN48343.1|2.0e-1749.02hypothetical protein Csa_6G483250 [Cucumis sativus][more]
gi|700193133|gb|KGN48337.1|2.2e-1143.68hypothetical protein Csa_6G483235 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.100760Cucsa.100760gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.100760.1Cucsa.100760.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.100760.1.five_prime_UTR.1Cucsa.100760.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.100760.1.CDS.1Cucsa.100760.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.100760.1.three_prime_UTR.1Cucsa.100760.1.three_prime_UTR.1three_prime_UTR