Cucsa.099640.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.099640.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nodule inception protein
Location	scaffold00926 : 357624 .. 357821 (+)
Sequence length	198

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATG

mRNA sequence

ATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATG

Coding sequence (CDS)

ATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATG

Protein sequence

MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSSTM

Homology

[Close]

BLAST of Cucsa.099640.1 vs. Swiss-Prot
Match: NLP1_ARATH (Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-12
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I R PSRKIKKVGH SL KLQLV+DSVQGA GSIQ+ +FY SFP+LN+P+
Sbjct: 645 IMRWPSRKIKKVGH-SLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

[Close]

BLAST of Cucsa.099640.1 vs. Swiss-Prot
Match: NLP2_ARATH (Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-12
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDT 60
           ITR PSRKIKKVGH SL KLQLV+DSVQG  GSIQ+ +FY SFP+L++P    T
Sbjct: 685 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGT 737

[Close]

BLAST of Cucsa.099640.1 vs. Swiss-Prot
Match: NLP3_ARATH (Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-10
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I+R PSRKIKKVGH SL KLQ+V+DSV+G  GS+ + +FY SFPQL + S
Sbjct: 535 ISRWPSRKIKKVGH-SLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSS 583

[Close]

BLAST of Cucsa.099640.1 vs. Swiss-Prot
Match: NLP4_ARATH (Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-09
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I R PSRKIKKVGH SL K+Q V+DSVQG  G + IG+FY +FP L + S   +    +T
Sbjct: 595 IQRWPSRKIKKVGH-SLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQSQEPSQQAKTT 653

[Close]

BLAST of Cucsa.099640.1 vs. Swiss-Prot
Match: NLP1_ORYSJ (Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.9e-08
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESF 49
           I R PSRKIKKVGH SL KLQ+V+DSV G +G++Q+ + YE+F
Sbjct: 659 INRWPSRKIKKVGH-SLKKLQMVIDSVHGPEGTVQLSSLYENF 700

[Close]

BLAST of Cucsa.099640.1 vs. TrEMBL
Match: A0A0A0K676_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024110 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.1e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
          MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD
Sbjct: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60

Query: 61 HCSSTM 67
          HCSSTM
Sbjct: 61 HCSSTM 66

[Close]

BLAST of Cucsa.099640.1 vs. TrEMBL
Match: M5VGP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018195mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-13
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSS 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN P FP +   SS
Sbjct: 599 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSS 656

[Close]

BLAST of Cucsa.099640.1 vs. TrEMBL
Match: A0A061DXA4_THECC (Plant regulator RWP-RK family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_006453 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.5e-13
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSS 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY SFP+L++P+F      SS
Sbjct: 671 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIQIGSFYSSFPELSSPNFSGNGPSSS 728

[Close]

BLAST of Cucsa.099640.1 vs. TrEMBL
Match: A0A0D2MDR4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206700 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.5e-13
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSS 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY SFP+L++P+    D  SS
Sbjct: 651 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYSSFPELSSPNLSGNDPSSS 708

[Close]

BLAST of Cucsa.099640.1 vs. TrEMBL
Match: A0A022RCG9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000964mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.5e-13
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+GSIQ+ +FY +FP+L +P+ P + H S++
Sbjct: 648 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGSIQLSSFYNNFPELVSPNVPGSSHLSTS 706

[Close]

BLAST of Cucsa.099640.1 vs. TAIR10
Match: AT2G17150.1 (AT2G17150.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 73.2 bits (178), Expect = 6.9e-14
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I R PSRKIKKVGH SL KLQLV+DSVQGA GSIQ+ +FY SFP+LN+P+
Sbjct: 645 IMRWPSRKIKKVGH-SLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

[Close]

BLAST of Cucsa.099640.1 vs. TAIR10
Match: AT4G35270.1 (AT4G35270.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 73.2 bits (178), Expect = 6.9e-14
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDT 60
           ITR PSRKIKKVGH SL KLQLV+DSVQG  GSIQ+ +FY SFP+L++P    T
Sbjct: 685 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGT 737

[Close]

BLAST of Cucsa.099640.1 vs. TAIR10
Match: AT4G38340.1 (AT4G38340.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-11
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I+R PSRKIKKVGH SL KLQ+V+DSV+G  GS+ + +FY SFPQL + S
Sbjct: 535 ISRWPSRKIKKVGH-SLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSS 583

[Close]

BLAST of Cucsa.099640.1 vs. TAIR10
Match: AT1G20640.1 (AT1G20640.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I R PSRKIKKVGH SL K+Q V+DSVQG  G + IG+FY +FP L + S   +    +T
Sbjct: 595 IQRWPSRKIKKVGH-SLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQSQEPSQQAKTT 653

[Close]

BLAST of Cucsa.099640.1 vs. TAIR10
Match: AT1G76350.1 (AT1G76350.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-08
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADG-SIQIGTFYESFPQL 52
           I R PSRKIKKVGH SL K+Q V+DSV+G  G  + IG+FY SFP L
Sbjct: 586 IQRWPSRKIKKVGH-SLQKIQRVIDSVEGVSGHHLPIGSFYASFPNL 631

[Close]

BLAST of Cucsa.099640.1 vs. NCBI nr
Match: gi|700188103|gb|KGN43336.1| (hypothetical protein Csa_7G024110 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
          MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD
Sbjct: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60

Query: 61 HCSSTM 67
          HCSSTM
Sbjct: 61 HCSSTM 66

[Close]

BLAST of Cucsa.099640.1 vs. NCBI nr
Match: gi|659094517|ref|XP_008448104.1| (PREDICTED: zinc finger protein ZAT3 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1   MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
           MQATWITRCPS KIKKVGHYSLSKLQLV+DSVQGADGSIQIG FYESFPQLN PSFPDTD
Sbjct: 294 MQATWITRCPSGKIKKVGHYSLSKLQLVIDSVQGADGSIQIGPFYESFPQLNPPSFPDTD 353

Query: 61  HCSST 66
           HCSST
Sbjct: 354 HCSST 358

[Close]

BLAST of Cucsa.099640.1 vs. NCBI nr
Match: gi|595790583|ref|XP_007199040.1| (hypothetical protein PRUPE_ppa018195mg [Prunus persica])

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-13
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSS 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN P FP +   SS
Sbjct: 599 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSS 656

[Close]

BLAST of Cucsa.099640.1 vs. NCBI nr
Match: gi|645260780|ref|XP_008235979.1| (PREDICTED: LOW QUALITY PROTEIN: protein NLP2-like [Prunus mume])

HSP 1 Score: 82.0 bits (201), Expect = 4.2e-13
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSS 65
           ITR PSRKIK VGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN+P FP +   SS
Sbjct: 659 ITRWPSRKIKMVGH-SLKKLQLVIDSVQGAEGAIDIGSFYSSFPELNSPKFPGSGQYSS 716

[Close]

BLAST of Cucsa.099640.1 vs. NCBI nr
Match: gi|823135820|ref|XP_012467670.1| (PREDICTED: protein NLP2-like [Gossypium raimondii])

HSP 1 Score: 80.9 bits (198), Expect = 9.4e-13
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSS 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY SFP+L++P+    D  SS
Sbjct: 651 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYSSFPELSSPNLSGNDPSSS 708

The following BLAST results are available for this feature:

BLAST of Cucsa.099640.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLP1_ARATH	1.2e-12	74.00	Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1	[more]
NLP2_ARATH	1.2e-12	68.52	Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3	[more]
NLP3_ARATH	4.3e-10	64.00	Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1	[more]
NLP4_ARATH	4.8e-09	53.33	Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1	[more]
NLP1_ORYSJ	6.9e-08	62.79	Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1	[more]

BLAST of Cucsa.099640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K676_CUCSA	9.1e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024110 PE=4 SV=1	[more]
M5VGP2_PRUPE	1.7e-13	71.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018195mg PE=4 SV=1	[more]
A0A061DXA4_THECC	6.5e-13	69.49	Plant regulator RWP-RK family protein, putative isoform 1 OS=Theobroma cacao GN=...	[more]
A0A0D2MDR4_GOSRA	6.5e-13	69.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G206700 PE=4 SV=1	[more]
A0A022RCG9_ERYGU	8.5e-13	65.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000964mg PE=4 SV=1	[more]

BLAST of Cucsa.099640.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17150.1	6.9e-14	74.00	Plant regulator RWP-RK family protein	[more]
AT4G35270.1	6.9e-14	68.52	Plant regulator RWP-RK family protein	[more]
AT4G38340.1	2.4e-11	64.00	Plant regulator RWP-RK family protein	[more]
AT1G20640.1	2.7e-10	53.33	Plant regulator RWP-RK family protein	[more]
AT1G76350.1	1.5e-08	63.83	Plant regulator RWP-RK family protein	[more]

BLAST of Cucsa.099640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188103\|gb\|KGN43336.1\|	1.3e-30	100.00	hypothetical protein Csa_7G024110 [Cucumis sativus]	[more]
gi\|659094517\|ref\|XP_008448104.1\|	1.8e-27	93.85	PREDICTED: zinc finger protein ZAT3 [Cucumis melo]	[more]
gi\|595790583\|ref\|XP_007199040.1\|	2.5e-13	71.19	hypothetical protein PRUPE_ppa018195mg [Prunus persica]	[more]
gi\|645260780\|ref\|XP_008235979.1\|	4.2e-13	69.49	PREDICTED: LOW QUALITY PROTEIN: protein NLP2-like [Prunus mume]	[more]
gi\|823135820\|ref\|XP_012467670.1\|	9.4e-13	69.49	PREDICTED: protein NLP2-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.099640	Cucsa.099640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.099640.1	Cucsa.099640.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.099640.1.CDS.1	Cucsa.099640.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32002	FAMILY NOT NAMED	coord: 6..66 score: 1.4
None	No IPR available	PANTHER	PTHR32002:SF3	PROTEIN NLP1-RELATED	coord: 6..66 score: 1.4